Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G1070 LG-10 + View
Arabidopsis lyrata AL1G63350 scaffold_1 + View
Aquilegia oxysepala Aqoxy1G00438 CHR01 - View
Arabidopsis thaliana AT1G55310 SC35-like splicing factor 33 Encodes a SR spliceosome protein that is localized to nuclear specks%2C interacts with SR45 and the U1-70K protein of the U1 snRNP%2C has sequence similar to human SC35 protein. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. SC35-like splicing factor 33 (SR33)%3B FUNCTIONS IN: protein binding%2C RNA binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: interchromatin granule%2C nuclear speck%2C nucleolus%2C plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1)%3B Has 74071 Blast hits to 42895 proteins in 2604 species: Archae - 973%3B Bacteria - 11117%3B Metazoa - 35835%3B Fungi - 6236%3B Plants - 4620%3B Viruses - 230%3B Other Eukaryotes - 15060 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB04g16966 ChrB04 - View
Brassica carinata BcaC01g01513 ChrC01 + View
Brassica napus A08p00730 A08 - View
Brassica napus C03p92610 C03 + View
Brassica rapa BraA08t32130Z A08 - View
Beta vulgaris EL10Ac3g06849 K12900 - FUS-interacting serine-arginine-rich protein 1 (FUSIP1) Chr3_EL10_PGA_scaffold7 + View
Beta vulgaris EL10Ac4g10368 K12900 - FUS-interacting serine-arginine-rich protein 1 (FUSIP1) Chr4_EL10_PGA_scaffold1 - View
Citrus clementina Ciclev10016371m.g scaffold_2 + View
Cardamine hirsuta CARHR044960 Arginine/serine-rich splicing factor Chr1 + View
Carya illinoinensis CiPaw.14G135100 PTHR23147//PTHR23147:SF6 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Chr14 - View
Carica papaya Cpa.g.sc119.64 supercontig_119 + View
Capsella rubella Carub.0001s4381 scaffold_1 + View
Capsella rubella Carub.0003s1305 K12900 - FUS-interacting serine-arginine-rich protein 1 (FUSIP1) scaffold_3 - View
Erigeron canadensis ECA248G3711 Conyza_canadensis_scaffold:9 + View
Eucalyptus grandis Eucgr.J01814 Chr10 - View
Erythranthe guttata Migut.N00566 scaffold_14 + View
Fragaria vesca FvH4_3g45331 PTHR23147//PTHR23147:SF11 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Fvb3 - View
Lactuca sativa Lsat_1_v5_gn_6_54241 Lsat_1_v8_lg_6 - View
Malus domestica MD11G1008700 SC35-like splicing factor 30A Chr11 + View
Manihot esculenta Manes.15G107000 Chromosome15 - View
Olea europaea Oeu059673.1 chr4 + View
Populus trichocarpa Potri.003G218600 PTHR23147//PTHR23147:SF6 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Chr03 - View
Schrenkiella parvula Sp1g40970 PTHR23147//PTHR23147:SF6 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED ch1-2 + View
Trochodendron aralioides TAR633G1703 group2 + View
Vaccinium macrocarpon vmacro12606 Similar to SCL30A: Serine/arginine-rich SC35-like splicing factor SCL30A (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01025432001 chr6 + View