Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr3.2360 chr3 - View
Acer truncatum Atru.chr8.1219 chr8 - View
Actinidia chinensis Actinidia17293 Lachesis_group25 - View
Actinidia chinensis Actinidia39355 Lachesis_group9 - View
Avicennia marina MSTRG.20944 ScioBoG_26769_HRSCAF_26899 + View
Arabidopsis thaliana AT3G13570 SC35-like splicing factor 30A encodes an SC35-like splicing factor of 30 kD that is localized to the nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. SC35-like splicing factor 30A (SCL30A)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 33 (TAIR:AT1G55310.3)%3B Has 39411 Blast hits to 22154 proteins in 1003 species: Archae - 84%3B Bacteria - 1991%3B Metazoa - 19033%3B Fungi - 3968%3B Plants - 4828%3B Viruses - 731%3B Other Eukaryotes - 8776 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaC01g01513 ChrC01 + View
Brassica oleracea BolC6t36788H C6 + View
Beta vulgaris EL10Ac4g10368 K12900 - FUS-interacting serine-arginine-rich protein 1 (FUSIP1) Chr4_EL10_PGA_scaffold1 - View
Camellia sinensis var. sinensis CSS0026311 unnamed protein product [Coffea canephora] Contig810 + View
Citrus clementina Ciclev10016371m.g scaffold_2 + View
Cardamine hirsuta CARHR088240 Serine/arginine rich splicing factor, putative Chr3 - View
Carya illinoinensis CiPaw.13G175500 PTHR23147//PTHR23147:SF11//PTHR23147:SF6 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED // SUBFAMILY NOT NAMED Chr13 - View
Carya illinoinensis CiPaw.10G023800 PTHR23147//PTHR23147:SF6 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Chr10 + View
Carya illinoinensis CiPaw.14G135100 PTHR23147//PTHR23147:SF6 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Chr14 - View
Carica papaya Cpa.g.sc119.64 supercontig_119 + View
Carica papaya Cpa.g.sc85.26 supercontig_85 + View
Chenopodium quinoa AUR62019180 SCL30A: Serine/arginine-rich SC35-like splicing factor SCL30A C_Quinoa_Scaffold_3107 + View
Capsella rubella Carub.0003s1305 K12900 - FUS-interacting serine-arginine-rich protein 1 (FUSIP1) scaffold_3 - View
Davidia involucrata Dinv13450 GWHABJS00000007 - View
Durio zibethinus Duzib093G1381 NW_019167937.1 - View
Durio zibethinus Duzib150G0274 NW_019167882.1 - View
Durio zibethinus Duzib168G0268 NW_019168159.1 - View
Erigeron canadensis ECA233G5876 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA248G3711 Conyza_canadensis_scaffold:9 + View
Erythranthe guttata Migut.D02546 scaffold_4 - View
Erythranthe guttata Migut.N00566 scaffold_14 + View
Fragaria x ananassa FAN14G0675 K12900 - FUS-interacting serine-arginine-rich protein 1 (FUSIP1) Fvb6-1 - View
Fragaria vesca FvH4_3g45331 PTHR23147//PTHR23147:SF11 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Fvb3 - View
Lotus japonicus Lj5g0005013 PTHR23147//PTHR23147:SF6 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED chr5 - View
Lactuca sativa Lsat_1_v5_gn_6_54241 Lsat_1_v8_lg_6 - View
Lactuca sativa Lsat_1_v5_gn_2_53461 Lsat_1_v8_lg_2 + View
Malus domestica MD11G1008700 SC35-like splicing factor 30A Chr11 + View
Malus domestica MD03G1005800 SC35-like splicing factor 30A Chr03 + View
Manihot esculenta Manes.15G107000 Chromosome15 - View
Manihot esculenta Manes.09G040200 Chromosome09 - View
Punica granatum PGR119G0664 NC_045132.1 + View
Prunus persica Prupe.6G005600 Pp06 + View
Prunus persica Prupe.7G085400 PTHR23147//PTHR23147:SF6 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Pp07 - View
Populus trichocarpa Potri.003G218600 PTHR23147//PTHR23147:SF6 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Chr03 - View
Populus trichocarpa Potri.001G006400 PTHR23147//PTHR23147:SF6 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Chr01 + View
Populus trichocarpa Potri.016G062500 KOG0151 - Predicted splicing regulator, contains RRM, SWAP and RPR domains Chr16 - View
Quercus lobata QL01p008467 1 - View
Rosa chinensis RcHm_v2.0_Chr5g0083131 RcHm_v2.0_Chr5 - View
Salix brachista Sabra03G0163000 GWHAAZH00000003 - View
Simmondsia chinensis Sc13g0002520 GWHAASQ00000013 - View
Solanum lycopersicum Solyc01g005820.4 Serine/arginine-rich-splicing factor SCL30A (AHRD V3.3 *** A0A0M9UMR8_NICAT) SL4.0ch01 + View
Schrenkiella parvula Sp3g11780 PTHR23147//PTHR23147:SF6 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED ch3-1 - View
Solanum pennellii Sopen01g001820 Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. | SC35-like splicing factor 33 (SR33) | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A . Spenn-ch01 + View
Solanum tuberosum PGSC0003DMG400032132 Serine/arginine-rich protein ST4.03ch01 + View
Solanum tuberosum PGSC0003DMG400004273 Serine/arginine-rich protein ST4.03ch12 - View
Trochodendron aralioides TAR633G1703 group2 + View
Theobroma cacao Thecc.09G208600 SC35-like splicing factor 33 Chromosome_9 + View
Tripterygium wilfordii TWI32G1002 NC_052254.1 - View
Tripterygium wilfordii TWI60G1426 NC_052246.1 + View
Tripterygium wilfordii TWI53G1669 NC_052244.1 - View
Vitis vinifera GSVIVG01025432001 chr6 + View