Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold44G16586 scaffold44 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G1810 LG-11 - View
Actinidia chinensis Actinidia13621 Lachesis_group3 + View
Arabidopsis lyrata AL6G17750 scaffold_6 - View
Arabidopsis thaliana AT5G61650 CYCLIN P4;2 The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ('cyclin box') displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei. CYCLIN P4%3B2 (CYCP4%3B2)%3B CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389)%2C Cyclin-like (InterPro:IPR011028)%2C Cyclin-related 2 (InterPro:IPR013922)%2C Cyclin (InterPro:IPR006670)%3B BEST Arabidopsis thaliana protein match is: cyclin p4%3B3 (TAIR:AT5G07450.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT5G07450 cyclin p4;3 cyclin p4%3B3 (CYCP4%3B3)%3B CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389)%2C Cyclin-like (InterPro:IPR011028)%2C Cyclin-related 2 (InterPro:IPR013922)%2C Cyclin (InterPro:IPR006670)%3B BEST Arabidopsis thaliana protein match is: CYCLIN P4%3B2 (TAIR:AT5G61650.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Brassica napus A03p47260 A03 + View
Brassica napus C07p45390 C07 + View
Brassica oleracea BolC7t45059H C7 + View
Brassica rapa BraA03t13853Z A03 + View
Camellia sinensis var. sinensis CSS0037789 cyclin-dependent protein kinase, putative [Ricinus communis] Chr1 + View
Coffea canephora Cc02_g04880 Cyclin-U4-1 chr2 + View
Citrus clementina Ciclev10005725m.g scaffold_9 - View
Carpinus fangiana Cfa013598 Cfa05 + View
Cardamine hirsuta CARHR275450 CYCLIN P4 Chr8 + View
Cardamine hirsuta CARHR205700 cyclin p4 Chr6 + View
Carya illinoinensis CiPaw.08G042400 PTHR15615:SF28 - CYCLIN-U4-1 Chr08 + View
Citrullus lanatus ClCG07G017150 Cyclin family protein CG_Chr07 + View
Cucumis melo MELO3C017631.2 cyclin-U4-1-like chr07 - View
Corchorus olitorius COL.COLO4_37316 Cyclin PHO80-like protein AWUE01023877.1 - View
Capsella rubella Carub.0008s2235 PTHR15615//PTHR15615:SF7 - UNCHARACTERIZED // CYCLIN-U4-2-RELATED scaffold_8 + View
Capsella rubella Carub.0006s0642 PTHR15615//PTHR15615:SF7 - UNCHARACTERIZED // CYCLIN-U4-2-RELATED scaffold_6 - View
Cucumis sativus L. CsaV3_4G004350 Cyclin chr4 + View
Daucus carota DCAR_029491 hypothetical protein DCARv2_Chr9 - View
Davidia involucrata Dinv34545 GWHABJS00000009 - View
Durio zibethinus Duzib068G0711 NW_019167838.1 - View
Durio zibethinus Duzib205G1212 NW_019168381.1 - View
Erigeron canadensis ECA238G2712 Conyza_canadensis_scaffold:6 - View
Erythranthe guttata Migut.F00538 scaffold_6 + View
Eutrema salsugineum Thhalv10005388m.g PTHR15615:SF7 - CYCLIN-U4-2-RELATED scaffold_6 - View
Fragaria x ananassa FAN01G2023 PTHR15615//PTHR15615:SF28 - UNCHARACTERIZED // CYCLIN-U4-1 Fvb7-4 + View
Fragaria x ananassa FAN06G0371 PTHR15615:SF28 - CYCLIN-U4-1 Fvb7-2 - View
Gossypium hirsutum Gohir.A12G195800 PTHR15615:SF28 - CYCLIN-U4-1 A12 - View
Gossypium hirsutum Gohir.A09G248600 PTHR15615:SF28 - CYCLIN-U4-1 A09 - View
Gossypium hirsutum Gohir.D12G198600 PTHR15615:SF28 - CYCLIN-U4-1 D12 - View
Gossypium hirsutum Gohir.D09G249600 PTHR15615:SF28 - CYCLIN-U4-1 D09 - View
Gossypium raimondii Gorai.006G273900 Chr06 - View
Gossypium raimondii Gorai.008G213300 Chr08 - View
Lonicera japonica Lj1C972T6 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_2_127141 PTHR15615:SF28 - CYCLIN-U4-1 Lsat_1_v8_lg_2 + View
Magnolia biondii MBI04_g13846_MAGBIO AED:0.41 Chr04 + View
Manihot esculenta Manes.06G130300 Chromosome06 - View
Olea europaea Oeu006081.1 chr1 + View
Oryza sativa ssp. japonica Os02g0652000 P-type cyclin, PHO80 homologous protein, Coordination of phosphate starvation signaling and cell cycle progression under phosphate starvation stress chr02 - View
Petunia axillaris Peaxi162Scf01305g00027 cyclin p4 Peaxi162Scf01305 + View
Prunus persica Prupe.2G271100 PTHR15615:SF28 - CYCLIN-U4-1 Pp02 - View
Populus trichocarpa Potri.014G050400 PTHR15615:SF28 - CYCLIN-U4-1 Chr14 + View
Rhododendron simsii Rhsim03G0159300 chr03 + View
Salvia bowleyana SalBow3G1293 GWHASIU00000006 - View
Sechium edule Sed0009019 LG07 - View
Solanum lycopersicum Solyc03g093790.3 cyclinU4_2 SL4.0ch03 + View
Schrenkiella parvula Sp6g35420 PTHR15615:SF7 - CYCLIN-U4-2-RELATED ch6-6 + View
Schrenkiella parvula Sp2g24860 PTHR15615:SF7 - CYCLIN-U4-2-RELATED ch2-4 + View
Solanum pennellii Sopen01g035690 cyclin p4, 1 (CYCP4, 1) | CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG , Cyclin-like , Cyclin, N-terminal , Cyclin | BEST Arabidopsis thaliana protein match is: CYCLIN P4, 2 Spenn-ch01 - View
Solanum pennellii Sopen03g024690 cyclin p4, 1 (CYCP4, 1) | CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG , Cyclin-like , Cyclin, N-terminal , Cyclin | BEST Arabidopsis thaliana protein match is: CYCLIN P4, 2 Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG400031310 Cyclin-dependent protein kinase ST4.03ch03 - View
Trochodendron aralioides TAR636G2123 group1 + View
Trochodendron aralioides TAR375G1120 group15 - View
Trochodendron aralioides TAR374G0700 group12 - View
Tarenaya hassleriana THA.LOC104801652 cyclin-U4-2-like NW_010960188.1 + View
Tarenaya hassleriana THA.LOC104818300 cyclin-U4-3-like NW_010966092.1 - View
Tripterygium wilfordii TWI14G1205 NC_052249.1 - View
Vaccinium macrocarpon vmacro06846 Similar to CYCU4-1: Cyclin-U4-1 (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 - View
Zea mays Zm00001eb023840 Zm00001e102544 Cyclin-U4-2 1 + View