Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold60G21110 scaffold60 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr1.356 chr1 - View
Actinidia chinensis Actinidia08579 Lachesis_group6 - View
Arabidopsis lyrata AL5G28470 scaffold_5 + View
Avicennia marina MSTRG.27086 ScioBoG_8578_HRSCAF_8617 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.77IXXA PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED arahy.Tifrunner.gnm1.Arahy.05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XU3PKM PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED arahy.Tifrunner.gnm1.Arahy.15 + View
Arabidopsis thaliana AT3G61490 Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Pectin lyase fold (InterPro:IPR012334)%2C Parallel beta-helix repeat (InterPro:IPR006626)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G23500.1)%3B Has 4119 Blast hits to 4104 proteins in 500 species: Archae - 6%3B Bacteria - 1446%3B Metazoa - 14%3B Fungi - 1115%3B Plants - 1406%3B Viruses - 0%3B Other Eukaryotes - 132 (source: NCBI BLink). Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Pectin lyase fold (InterPro:IPR012334)%2C Parallel beta-helix repeat (InterPro:IPR006626)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G23500.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr3 + View
Arabidopsis thaliana AT3G48950 Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: central cell%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Pectin lyase fold (InterPro:IPR012334)%2C Parallel beta-helix repeat (InterPro:IPR006626)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G23900.1)%3B Has 4179 Blast hits to 4160 proteins in 504 species: Archae - 6%3B Bacteria - 1499%3B Metazoa - 14%3B Fungi - 1097%3B Plants - 1422%3B Viruses - 0%3B Other Eukaryotes - 141 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC09g50984 ChrC09 - View
Brassica napus A06p18820 A06 - View
Brassica oleracea BolC8t50016H C8 + View
Camellia sinensis var. sinensis CSS0042544 Pectin lyase-like superfamily protein isoform 2 [Theobroma cacao] Chr1 + View
Cicer arietinum L. Ca_23595_v3 Ca_LG7_v3 - View
Cicer arietinum L. Ca_10723_v3 Ca_LG4_v3 - View
Corylus avellana Haze_00044 Similar to GSVIVT00026920001: Probable polygalacturonase (Vitis vinifera OX%3D29760) 1 + View
Citrus clementina Ciclev10004864m.g scaffold_9 + View
Carpinus fangiana Cfa016287 Cfa06 + View
Cardamine hirsuta CARHR171830 Pectin lyase-like superfamily protein Chr5 + View
Cardamine hirsuta CARHR230840 Pectin lyase-like superfamily protein Chr7 + View
Cardamine hirsuta CARHR157750 Pectin lyase-like superfamily protein Chr5 + View
Carya illinoinensis CiPaw.05G262400 PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED Chr05 - View
Citrullus lanatus ClCG01G000920 Pectin lyase-like superfamily protein LENGTH=469 CG_Chr01 - View
Citrullus lanatus ClCG05G001360 Pectin lyase-like superfamily protein LENGTH=476 CG_Chr05 - View
Cucumis melo MELO3C005839.2 Glycoside hydrolase family 28 protein/polygalacturonase family protein chr09 + View
Cucumis melo MELO3C006092.2 Glycoside hydrolase family 28 protein/polygalacturonase family protein chr06 - View
Carica papaya Cpa.g.sc107.107 supercontig_107 + View
Chenopodium quinoa AUR62031421 GSVIVT00026920001: Probable polygalacturonase C_Quinoa_Scaffold_2963 + View
Chenopodium quinoa AUR62021121 GSVIVT00026920001: Probable polygalacturonase C_Quinoa_Scaffold_1783 - View
Capsella rubella Carub.0005s2818 scaffold_5 + View
Capsella rubella Carub.0005s1513 PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED scaffold_5 + View
Cucumis sativus L. CsaV3_5G001070 Pectin lyase-like superfamily protein chr5 - View
Daucus carota DCAR_020280 hypothetical protein DCARv2_Chr6 + View
Davidia involucrata Dinv28386 GWHABJS00000004 - View
Davidia involucrata Dinv35253 GWHABJS00000009 - View
Durio zibethinus Duzib205G1172 NW_019168381.1 + View
Erigeron canadensis ECA233G5087 Conyza_canadensis_scaffold:1 - View
Eucalyptus grandis Eucgr.D01821 Chr04 - View
Eucalyptus grandis Eucgr.A02740 Chr01 - View
Erythranthe guttata Migut.F00291 scaffold_6 - View
Erythranthe guttata Migut.E01247 scaffold_5 - View
Eutrema salsugineum Thhalv10005939m.g PTHR31339:SF12 - POLYGALACTURONASE-LIKE PROTEIN scaffold_19 - View
Eutrema salsugineum Thhalv10025011m.g PTHR31339:SF7 - POLYGALACTURONASE-RELATED scaffold_1 - View
Gossypium hirsutum Gohir.A11G091200 PTHR31339:SF12 - POLYGALACTURONASE-LIKE PROTEIN A11 + View
Gossypium hirsutum Gohir.A07G141100 PTHR31339:SF12 - POLYGALACTURONASE-LIKE PROTEIN A07 - View
Gossypium hirsutum Gohir.D11G011500 PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED D11 + View
Gossypium hirsutum Gohir.D12G256500 PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED D12 - View
Gossypium hirsutum Gohir.A11G012300 PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED A11 + View
Gossypium hirsutum Gohir.A12G254200 PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED A12 - View
Glycine max Glyma.08G017300 PTHR31339//PTHR31339:SF7 - FAMILY NOT NAMED // POLYGALACTURONASE-RELATED Gm08 + View
Glycine max Glyma.10G230900 PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED Gm10 - View
Glycine max Glyma.09G132100 PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED Gm09 - View
Glycine max Glyma.05G210900 PTHR31339//PTHR31339:SF7 - FAMILY NOT NAMED // POLYGALACTURONASE-RELATED Gm05 + View
Glycine max Glyma.16G179000 PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED Gm16 - View
Glycine max Glyma.20G162700 PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED Gm20 + View
Gossypium raimondii Gorai.007G012900 Chr07 + View
Gossypium raimondii Gorai.007G102200 Chr07 + View
Gossypium raimondii Gorai.008G274700 Chr08 - View
Hydrangea macrophylla Hma1.2p1_0327F.1_g126430 Hma1.2p1_0327F.1 + View
Lupinus albus Lalb_Chr06g0161331 PTHR31339//PTHR31339:SF17 - FAMILY NOT NAMED // ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED Lalb_Chr06 + View
Lupinus albus Lalb_Chr02g0141251 PTHR31339//PTHR31339:SF17 - FAMILY NOT NAMED // ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED Lalb_Chr02 + View
Lupinus albus Lalb_Chr05g0224571 PTHR31339:SF7 - POLYGALACTURONASE-RELATED Lalb_Chr05 - View
Lonicera japonica Lj1A1005T64 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_8_6601 Lsat_1_v8_lg_8 - View
Manihot esculenta Manes.14G021800 Chromosome14 + View
Medicago truncatula Medtr1g099850 pectin lyase superfamily protein chr1 - View
Punica granatum PGR042G0539 NC_045130.1 - View
Punica granatum PGR031G3975 NC_045127.1 + View
Prunus persica Prupe.2G300900 PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED Pp02 + View
Populus trichocarpa Potri.003G131700 PTHR31339//PTHR31339:SF7 - FAMILY NOT NAMED // POLYGALACTURONASE-RELATED Chr03 + View
Phaseolus vulgaris Phvul.007G074300 PTHR31339:SF17 - ENDO-POLYGALACTURONASE-LIKE PROTEIN-RELATED Chr07 + View
Quercus lobata QL09p012808 9 - View
Rosa chinensis RcHm_v2.0_Chr1g0378321 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim02G0234900 chr02 + View
Salix brachista Sabra03G0094100 GWHAAZH00000003 + View
Salix brachista Sabra01G0075000 GWHAAZH00000001 - View
Simmondsia chinensis Sc13g0009180 GWHAASQ00000013 + View
Simmondsia chinensis Sc22g0005350 GWHAASQ00000022 - View
Sechium edule Sed0022004 LG01 - View
Schrenkiella parvula Sp7g21400 PTHR31339//PTHR31339:SF7 - FAMILY NOT NAMED // POLYGALACTURONASE-RELATED ch7-4 + View
Schrenkiella parvula Sp5g01910 PTHR31339//PTHR31339:SF12 - FAMILY NOT NAMED // POLYGALACTURONASE-LIKE PROTEIN ch5-1 - View
Solanum tuberosum PGSC0003DMG401009510 Polygalacturonase ST4.03ch03 + View
Solanum tuberosum PGSC0003DMG400021658 Polygalacturonase ST4.03ch05 - View
Selenicereus undatus Hund11720 Scaffold_33679 - View
Trochodendron aralioides TAR375G0534 group15 + View
Theobroma cacao Thecc.03G184300 Pectin lyase-like superfamily protein Chromosome_3 + View
Tripterygium wilfordii TWI39G0718 NC_052250.1 + View
Tripterygium wilfordii TWI81G0968 NC_052251.1 + View
Utricularia gibba unitig_37.g11972 unitig_37 + View
Vaccinium macrocarpon vmacro06627 Similar to GSVIVT00026920001: Probable polygalacturonase (Vitis vinifera OX%3D29760) chr2_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro11402 Similar to GSVIVT00026920001: Probable polygalacturonase (Vitis vinifera OX%3D29760) chr8_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0720G1792 CM024071.1 - View
Vitis vinifera GSVIVG01028861001 chr16 + View