Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold334G49092 scaffold334 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G28530 LG-1 + View
Aethionema arabicum Aa31LG10G16240 LG-10 + View
Acer truncatum Atru.chr5.946 chr5 + View
Arabidopsis lyrata AL4G46740 scaffold_4 + View
Avicennia marina MSTRG.18079 ScioBoG_22153_HRSCAF_22259 + View
Amaranthus hybridus Ah.11g049090 DUF724 domain-containing protein 3 (AtDUF3) AmaHy_arrow1_Scaffold_11 - View
Arabidopsis thaliana AT3G62300 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7) Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype DOMAIN OF UNKNOWN FUNCTION 724 7 (DUF7)%3B FUNCTIONS IN: RNA binding%3B LOCATED IN: nucleus%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Tudor-like%2C plant (InterPro:IPR014002)%2C Agenet (InterPro:IPR008395)%2C Protein of unknown function DUF724 (InterPro:IPR007930)%3B BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1)%3B Has 299 Blast hits to 227 proteins in 36 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 29%3B Fungi - 0%3B Plants - 252%3B Viruses - 0%3B Other Eukaryotes - 14 (source: NCBI BLink). DOMAIN OF UNKNOWN FUNCTION 724 7 (DUF7)%3B FUNCTIONS IN: RNA binding%3B LOCATED IN: nucleus%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395)%2C Tudor-like%2C plant (InterPro:IPR014002)%2C Protein of unknown function DUF724 (InterPro:IPR007930)%3B BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1). Chr3 + View
Arabidopsis thaliana AT2G47220 polyribonucleotide phosphorylase, putative (DOMAIN OF UNKNOWN FUNCTION 724 5) Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype DOMAIN OF UNKNOWN FUNCTION 724 5 (DUF5)%3B FUNCTIONS IN: 3'-5'-exoribonuclease activity%2C oxidoreductase activity%2C RNA binding%3B INVOLVED IN: metabolic process%2C RNA processing%3B LOCATED IN: nucleus%3B EXPRESSED IN: 8 plant structures%3B EXPRESSED DURING: lateral root emergence%3B CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568)%2C Protein of unknown function DUF724 (InterPro:IPR007930)%2C Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198)%3B BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 2 (TAIR:AT1G11420.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr2 + View
Brassica carinata BcaB06g29457 ChrB06 - View
Brassica carinata BcaB02g08791 ChrB02 - View
Brassica napus A09p54300 A09 + View
Brassica napus C04p00660 C04 - View
Brassica napus A05p00610 A05 - View
Brassica napus C08p37180 C08 + View
Brassica oleracea BolC8t51295H C8 + View
Brassica rapa BraA05t19058Z A05 - View
Brassica rapa BraA09t40842Z A09 + View
Cannabis sativa CANSAT54G1464 NC_044375.1 + View
Corylus avellana Haze_05080 Similar to DUF2: DUF724 domain-containing protein 2 (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc01_g21640 Putative agenet domain-containing protein chr1 - View
Cardamine hirsuta CARHR142610 Agenet domain-containing protein Chr4 + View
Carya illinoinensis CiPaw.08G086900 PTHR31917//PTHR31917:SF20 - FAMILY NOT NAMED // AGENET DOMAIN-CONTAINING PROTEIN-RELATED Chr08 + View
Carya illinoinensis CiPaw.07G120400 PTHR31917//PTHR31917:SF20//PTHR31917:SF4 - FAMILY NOT NAMED // AGENET DOMAIN-CONTAINING PROTEIN-RELATED // AGENET DOMAIN-CONTAINING PROTEIN-RELATED Chr07 - View
Citrullus lanatus ClCG09G004910 Agenet domain-containing protein CG_Chr09 + View
Carica papaya Cpa.g.sc48.181 supercontig_48 - View
Chenopodium quinoa AUR62011757 Protein of unknown function C_Quinoa_Scaffold_2008 + View
Chenopodium quinoa AUR62024602 Protein of unknown function C_Quinoa_Scaffold_1992 + View
Capsella rubella Carub.0004s2996 PTHR31917:SF20 - AGENET DOMAIN-CONTAINING PROTEIN-RELATED scaffold_4 + View
Cucumis sativus L. CsaV3_7G030170 DUF724 domain-containing protein chr7 - View
Daucus carota DCAR_005738 hypothetical protein DCARv2_Chr2 + View
Daucus carota DCAR_002907 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv33141 GWHABJS00000010 - View
Durio zibethinus Duzib133G0686 NW_019167938.1 + View
Durio zibethinus Duzib211G0322 NW_019168049.1 + View
Erigeron canadensis ECA247G0073 Conyza_canadensis_scaffold:7 + View
Erigeron canadensis ECA236G2303 Conyza_canadensis_scaffold:3 - View
Erythranthe guttata Migut.D00056 scaffold_4 + View
Eutrema salsugineum Thhalv10001489m.g PTHR31917:SF20 - AGENET DOMAIN-CONTAINING PROTEIN-RELATED scaffold_22 + View
Fragaria x ananassa FAN19G2659 PTHR31917//PTHR31917:SF4 - FAMILY NOT NAMED // AGENET DOMAIN-CONTAINING PROTEIN-RELATED Fvb1-4 + View
Fragaria x ananassa FAN23G0943 PTHR31917//PTHR31917:SF4 - FAMILY NOT NAMED // AGENET DOMAIN-CONTAINING PROTEIN-RELATED Fvb1-3 + View
Fragaria vesca FvH4_1g26800 PTHR31917//PTHR31917:SF4 - FAMILY NOT NAMED // AGENET DOMAIN-CONTAINING PROTEIN-RELATED Fvb1 + View
Gossypium hirsutum Gohir.A08G120300 PTHR31917:SF20 - AGENET DOMAIN-CONTAINING PROTEIN-RELATED A08 - View
Helianthus annuus HanXRQChr15g0465111 Putative agenet-like domain; Agenet domain, plant type HanXRQChr15 - View
Lonicera japonica Lj2A1210T30 GWHAAZE00000002 - View
Lonicera japonica Lj1A14T72 GWHAAZE00000001 + View
Manihot esculenta Manes.01G230800 Chromosome01 - View
Olea europaea Oeu038046.1 chr12 + View
Punica granatum PGR083G2389 NC_045133.1 + View
Populus trichocarpa Potri.002G192300 PTHR31917//PTHR31917:SF4 - FAMILY NOT NAMED // AGENET DOMAIN-CONTAINING PROTEIN-RELATED Chr02 + View
Populus trichocarpa Potri.005G011100 PF05641 - Agenet domain (Agenet) Chr05 + View
Populus trichocarpa Potri.014G117800 PTHR31917//PTHR31917:SF4 - FAMILY NOT NAMED // AGENET DOMAIN-CONTAINING PROTEIN-RELATED Chr14 + View
Quercus lobata QL12p018838 12 + View
Rosa chinensis RcHm_v2.0_Chr3g0487021 RcHm_v2.0_Chr3 + View
Rhododendron simsii Rhsim01G0292300 chr01 - View
Salvia bowleyana SalBow3G2875 GWHASIU00000006 + View
Salix brachista Sabra02G0163600 GWHAAZH00000002 - View
Sechium edule Sed0018754 LG09 - View
Solanum lycopersicum Solyc01g079230.4 Duf724 domain-containing protein 3 (AHRD V3.3 *** A0A1J6JCE9_NICAT) SL4.0ch01 + View
Solanum lycopersicum Solyc01g100780.3 Agenet-like domain-containing protein (AHRD V3.3 *** A0A2U1NB46_ARTAN) SL4.0ch01 - View
Schrenkiella parvula Sp5g01090 PTHR31917//PTHR31917:SF4 - FAMILY NOT NAMED // AGENET DOMAIN-CONTAINING PROTEIN-RELATED ch5-1 - View
Solanum pennellii Sopen01g031010 Agenet domain-containing protein | FUNCTIONS IN: RNA binding | INVOLVED IN: biological_process unknown | LOCATED IN: vacuole | EXPRESSED IN: 13 plant structures | EXPRESSED DURING: 8 growth stages | CONTAINS InterPro DOMAIN/s: Tudor-like, plant , Agenet , Protein of unknown function DUF724 | BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 Spenn-ch01 + View
Solanum pennellii Sopen01g044280 agenet domain-containing protein | FUNCTIONS IN: RNA binding | INVOLVED IN: biological_process unknown | LOCATED IN: chloroplast | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Tudor-like, plant , Agenet | BEST Arabidopsis thaliana protein match is: agenet domain-containing protein Spenn-ch01 - View
Solanum tuberosum PGSC0003DMG400009053 RNA binding protein ST4.03ch01 - View
Selenicereus undatus Hund09660 Scaffold_10417 - View
Tarenaya hassleriana THA.LOC104802141 DUF724 domain-containing protein 2-like isoform X1 NW_010970490.1 + View
Tarenaya hassleriana THA.LOC104817448 DUF724 domain-containing protein 7-like isoform X1 NW_010965946.1 + View
Vaccinium macrocarpon vmacro01582 Similar to AGDP1: Protein AGENET DOMAIN (AGD)-CONTAINING P1 (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01028157001 chr7 - View
Vitis vinifera GSVIVG01031264001 chr14 + View