Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold58G20546 scaffold58 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G4660 LG-10 - View
Acer truncatum Atru.chr5.2999 chr5 - View
Actinidia chinensis Actinidia27903 Lachesis_group16 - View
Arabidopsis lyrata AL3G32200 scaffold_3 + View
Avicennia marina MSTRG.16800 ScioBoG_19743_HRSCAF_19834 - View
Avicennia marina MSTRG.20090 ScioBoG_26180_HRSCAF_26306 + View
Amaranthus hybridus Ah.01g019460 Ras-related protein Rab7 AmaHy_arrow1_Scaffold_1 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.MHNB2C PTHR24073//PTHR24073:SF375 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABG3F arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.439F1X PTHR24073//PTHR24073:SF375 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABG3F arahy.Tifrunner.gnm1.Arahy.03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.W02XZP PTHR24073//PTHR24073:SF375 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABG3F arahy.Tifrunner.gnm1.Arahy.17 - View
Arabidopsis thaliana AT1G49300 RAB GTPase homolog G3E encodes a small GTPase involved in membrane trafficking. Gene expression is induced by hydrogen peroxide and lines. Lines overexpressing the gene are more tolerant to high salt and hyperosmotic conditions. RAB GTPase homolog G3E (RABG3E)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: response to oxidative stress%2C response to salt stress%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3F (TAIR:AT3G18820.1)%3B Has 26432 Blast hits to 26400 proteins in 770 species: Archae - 38%3B Bacteria - 194%3B Metazoa - 13526%3B Fungi - 3963%3B Plants - 2941%3B Viruses - 20%3B Other Eukaryotes - 5750 (source: NCBI BLink). RAB GTPase homolog G3E (RABG3E)%3B FUNCTIONS IN: GTP binding%3B INVOLVED IN: response to oxidative stress%2C response to salt stress%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806)%2C Small GTP-binding protein (InterPro:IPR005225)%2C Small GTPase (InterPro:IPR020851)%2C Ras (InterPro:IPR013753)%2C Ras small GTPase%2C Rab type (InterPro:IPR003579)%3B BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3F (TAIR:AT3G18820.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC07g41113 ChrC07 + View
Brassica napus C08p41140 C08 + View
Brassica oleracea BolC8t51681H C8 + View
Brassica rapa BraA05t21920Z A05 - View
Brassica rapa BraA09t41183Z A09 + View
Beta vulgaris EL10Ac9g21734 PTHR24073:SF375 - RAS-RELATED PROTEIN RABG3F Chr9_EL10_PGA_scaffold8 + View
Capsicum annuum CAN.G322.128 PGAv.1.6.scaffold322 - View
Corylus avellana Haze_02375 Similar to Ras-related protein Rab7 (Pisum sativum OX%3D3888) 1 - View
Coffea canephora Cc02_g17670 Ras-related protein RABG3f chr2 + View
Citrus clementina Ciclev10029292m.g scaffold_8 - View
Ceratophyllum demersum CDE06G0373 4 + View
Carpinus fangiana Cfa005012 Cfa02 + View
Cardamine hirsuta CARHR094230 Ras-related protein Rab-7a Chr3 + View
Cardamine hirsuta CARHR039290 Ras-related protein Rab-7a Chr1 + View
Citrullus lanatus ClCG02G005090 Ras-related protein Rab-7a CG_Chr02 + View
Carica papaya Cpa.g.sc62.138 supercontig_62 - View
Chenopodium quinoa AUR62016727 Ras-related protein Rab7 C_Quinoa_Scaffold_3670 - View
Chenopodium quinoa AUR62011334 Ras-related protein Rab7 C_Quinoa_Scaffold_3333 + View
Capsella rubella Carub.0001s3847 K07897//K07976 - Ras-related protein Rab-7A (RAB7A) // Rab family, other (RAB) scaffold_1 + View
Capsella rubella Carub.0003s1864 PTHR24073//PTHR24073:SF375 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABG3F scaffold_3 + View
Capsella rubella Carub.0004s0091 PTHR24073//PTHR24073:SF462 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABG1-RELATED scaffold_4 - View
Daucus carota DCAR_022114 hypothetical protein DCARv2_Chr6 + View
Davidia involucrata Dinv23535 GWHABJS00000005 + View
Davidia involucrata Dinv42071 GWHABJS00000002 - View
Erigeron canadensis ECA234G3291 Conyza_canadensis_scaffold:4 - View
Erigeron canadensis ECA236G0252 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.G01650 Chr07 - View
Erythranthe guttata Migut.N01233 scaffold_14 - View
Erythranthe guttata Migut.B00246 scaffold_2 + View
Eutrema salsugineum Thhalv10011767m.g scaffold_7 - View
Gossypium hirsutum Gohir.A12G028200 PTHR24073//PTHR24073:SF375 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABG3F A12 - View
Gossypium hirsutum Gohir.D13G033400 PTHR24073//PTHR24073:SF375 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABG3F D13 + View
Gossypium hirsutum Gohir.A13G035000 PTHR24073//PTHR24073:SF375 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABG3F A13 + View
Glycine max Glyma.11G118800 PTHR24073//PTHR24073:SF375 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABG3F Gm11 + View
Glycine max Glyma.12G044100 PTHR24073//PTHR24073:SF375 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABG3F Gm12 + View
Gossypium raimondii Gorai.013G037800 Chr13 + View
Helianthus annuus HanXRQChr10g0307241 Probable ras-related protein Rab7 HanXRQChr10 + View
Helianthus annuus HanXRQChr08g0216651 Putative small GTPase superfamily; Ran GTPase; P-loop containing nucleoside triphosphate hydrolase HanXRQChr08 - View
Hydrangea macrophylla Hma1.2p1_0066F.1_g036500 Hma1.2p1_0066F.1 + View
Lupinus albus Lalb_Chr01g0002601 K07897//K07976 - Ras-related protein Rab-7A (RAB7A) // Rab family, other (RAB) Lalb_Chr01 + View
Lotus japonicus Lj3g0007666 PTHR24073:SF375 - RAS-RELATED PROTEIN RABG3F chr3 + View
Lonicera japonica Lj9A369G64 GWHAAZE00000009 - View
Lonicera japonica Lj5C198T11 GWHAAZE00000005 + View
Lactuca sativa Lsat_1_v5_gn_5_118760 K07897//K07976 - Ras-related protein Rab-7A (RAB7A) // Rab family, other (RAB) Lsat_1_v8_lg_5 + View
Manihot esculenta Manes.17G100200 Chromosome17 - View
Petunia axillaris Peaxi162Scf00016g00837 RAB GTPase homolog 7A Peaxi162Scf00016 + View
Punica granatum PGR042G1598 NC_045130.1 - View
Prunus persica Prupe.8G098400 PTHR24073:SF375 - RAS-RELATED PROTEIN RABG3F Pp08 + View
Populus trichocarpa Potri.009G115000 PTHR24073//PTHR24073:SF375 - FAMILY NOT NAMED // RAS-RELATED PROTEIN RABG3F Chr09 - View
Phaseolus vulgaris Phvul.011G046100 PTHR24073:SF375 - RAS-RELATED PROTEIN RABG3F Chr11 + View
Salvia bowleyana SalBow6G4513 GWHASIU00000002 + View
Salvia bowleyana SalBow3G4394 GWHASIU00000006 + View
Salvia bowleyana SalBow6G4414 GWHASIU00000002 + View
Salix brachista Sabra09G0088100 GWHAAZH00000009 - View
Salix brachista Sabra04G0101800 GWHAAZH00000004 - View
Simmondsia chinensis Sc08g0000460 GWHAASQ00000008 - View
Sechium edule Sed0009408 LG04 + View
Solanum lycopersicum Solyc01g109520.3 Ras-related protein (AHRD V3.3 *** A0A2U1NEY8_ARTAN) SL4.0ch01 - View
Schrenkiella parvula Sp4g00980 PTHR24073:SF462 - RAS-RELATED PROTEIN RABG1-RELATED ch4-1 - View
Solanum pennellii Sopen01g051710 RAB GTPase homolog G3F (RAB7B) | FUNCTIONS IN: GTP binding | INVOLVED IN: protein transport, small GTPase mediated signal transduction | LOCATED IN: plasma membrane, nucleus | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ras GTPase , Small GTP-binding protein , Small GTPase , Ras , Ras small GTPase, Rab type | BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3E Spenn-ch01 - View
Solanum tuberosum PGSC0003DMG400000720 GTP-binding protein ST4.03ch01 - View
Selenicereus undatus Hund06227 Scaffold_33676 - View
Trochodendron aralioides TAR376G0447 group14 - View
Tripterygium wilfordii TWI79G0051 NC_052238.1 - View
Tripterygium wilfordii TWI75G0048 NC_052253.1 + View
Vaccinium macrocarpon vmacro17498 Similar to Ras-related protein Rab7 (Pisum sativum OX%3D3888) chr3_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro02116 Similar to Ras-related protein Rab7 (Pisum sativum OX%3D3888) chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1127G1088 CM024076.1 + View
Vitis vinifera GSVIVG01031953001 chr3 - View