Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold221G42737 scaffold221 + View
SGA_v2.0_scaffold153G37060 scaffold153 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G27180 LG-1 - View
Aethionema arabicum Aa31LG3G8400 LG-3 - View
Acer truncatum Atru.chr1.542 chr1 + View
Acer truncatum Atru.chr5.387 chr5 - View
Actinidia chinensis Actinidia31459 Lachesis_group0 + View
Arabidopsis lyrata AL8G26310 scaffold_8 - View
Arabidopsis lyrata AL7G27650 scaffold_7 + View
Arabidopsis lyrata AL4G44900 scaffold_4 - View
Avicennia marina MSTRG.27142 ScioBoG_8578_HRSCAF_8617 + View
Avicennia marina MSTRG.17228 ScioBoG_19743_HRSCAF_19834 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.UFST2G PF00400//PF00642//PF11715 - WD domain, G-beta repeat (WD40) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // Nucleoporin Nup120/160 (Nup160) arahy.Tifrunner.gnm1.Arahy.09 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.E8Y2WS PF00400//PF00642 - WD domain, G-beta repeat (WD40) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) arahy.Tifrunner.gnm1.Arahy.05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.HBJB6N KOG0265//KOG0279//KOG0315//KOG0643//KOG0645 - U5 snRNP-specific protein-like factor and related proteins // G protein beta subunit-like protein // G-protein beta subunit-like protein (contains WD40 repeats) // Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) // WD40 repeat protein arahy.Tifrunner.gnm1.Arahy.19 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.DAPK4A PF00400//PF00642 - WD domain, G-beta repeat (WD40) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) arahy.Tifrunner.gnm1.Arahy.15 - View
Arabidopsis thaliana AT4G25440 zinc finger WD40 repeat protein 1 zinc finger WD40 repeat protein 1 (ZFWD1)%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: xylem%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G51980.1)%3B Has 28356 Blast hits to 16036 proteins in 564 species: Archae - 44%3B Bacteria - 4332%3B Metazoa - 10522%3B Fungi - 6455%3B Plants - 3358%3B Viruses - 0%3B Other Eukaryotes - 3645 (source: NCBI BLink). Chr4 - View
Arabidopsis thaliana AT5G51980 Transducin/WD40 repeat-like superfamily protein Transducin/WD40 repeat-like superfamily protein%3B FUNCTIONS IN: zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: zinc finger WD40 repeat protein 1 (TAIR:AT4G25440.1)%3B Has 29363 Blast hits to 16060 proteins in 578 species: Archae - 38%3B Bacteria - 4405%3B Metazoa - 10853%3B Fungi - 6886%3B Plants - 3443%3B Viruses - 0%3B Other Eukaryotes - 3738 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaC09g50768 ChrC09 + View
Brassica carinata BcaC01g06150 ChrC01 - View
Brassica carinata BcaB08g35553 ChrB08 - View
Brassica carinata BcaC04g20614 ChrC04 + View
Brassica napus C03p18740 C03 + View
Brassica napus C09p41490 C09 - View
Brassica napus A03p15940 A03 + View
Brassica napus A10p09770 A10 - View
Brassica oleracea BolC9t57027H C9 - View
Brassica oleracea BolC3t14265H C3 + View
Brassica rapa BraA03t10884Z A03 + View
Brassica rapa BraA10t43059Z A10 - View
Beta vulgaris EL10Ac3g05725 PF00400//PF00642 - WD domain, G-beta repeat (WD40) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Chr3_EL10_PGA_scaffold7 + View
Camellia sinensis var. sinensis CSS0045148 hypothetical protein PRUPE_ppa006002mg [Prunus persica] Chr1 - View
Corylus avellana Haze_13775 Similar to ZFWD1: Zinc finger CCCH domain-containing protein 48 (Arabidopsis thaliana OX%3D3702) 5 + View
Coffea canephora Cc02_g03500 Zinc finger CCCH domain-containing protein 48 chr2 + View
Coffea canephora Cc02_g37130 Putative Zinc finger CCCH domain-containing protein 48 chr2 - View
Citrus clementina Ciclev10005002m.g scaffold_9 - View
Ceratophyllum demersum CDE02G4329 1 - View
Ceratophyllum demersum CDE11G0411 9 + View
Carpinus fangiana Cfa008269 Cfa03 - View
Cardamine hirsuta CARHR140940 WD-40 repeat family protein Chr4 - View
Cardamine hirsuta CARHR264920 WD-40 repeat family protein Chr8 - View
Cardamine hirsuta CARHR232870 WD-40 repeat family protein Chr7 - View
Carya illinoinensis CiPaw.03G101500 PTHR22844//PTHR22844:SF178 - F-BOX AND WD40 DOMAIN PROTEIN // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED Chr03 - View
Carya illinoinensis CiPaw.04G068700 PTHR22844:SF178 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED Chr04 + View
Carica papaya Cpa.g.sc4.223 supercontig_4 - View
Chenopodium quinoa AUR62016044 ZFWD2: Zinc finger CCCH domain-containing protein 63 C_Quinoa_Scaffold_3256 + View
Chenopodium quinoa AUR62021250 ZFWD1: Zinc finger CCCH domain-containing protein 48 C_Quinoa_Scaffold_1783 + View
Capsella rubella Carub.0007s1554 PTHR22844//PTHR22844:SF178 - F-BOX AND WD40 DOMAIN PROTEIN // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED scaffold_7 + View
Capsella rubella Carub.0008s1207 PTHR22844//PTHR22844:SF178 - F-BOX AND WD40 DOMAIN PROTEIN // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED scaffold_8 - View
Daucus carota DCAR_018151 hypothetical protein DCARv2_Chr5 - View
Daucus carota DCAR_009404 hypothetical protein DCARv2_Chr3 + View
Davidia involucrata Dinv35166 GWHABJS00000009 + View
Davidia involucrata Dinv32416 GWHABJS00000020 - View
Davidia involucrata Dinv28497 GWHABJS00000004 + View
Durio zibethinus Duzib068G1090 NW_019167838.1 - View
Durio zibethinus Duzib205G1137 NW_019168381.1 - View
Erigeron canadensis ECA233G4894 Conyza_canadensis_scaffold:1 + View
Eucalyptus grandis Eucgr.A02838 Chr01 + View
Erythranthe guttata Migut.F00387 scaffold_6 + View
Erythranthe guttata Migut.B01676 scaffold_2 - View
Eutrema salsugineum Thhalv10013582m.g PTHR22844:SF178 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED scaffold_2 + View
Eutrema salsugineum Thhalv10025269m.g PTHR22844:SF178 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED scaffold_1 + View
Fragaria x ananassa FAN03G1395 PF00400//PF00642 - WD domain, G-beta repeat (WD40) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Fvb7-3 + View
Fragaria x ananassa FAN10G1082 PF00400//PF00642 - WD domain, G-beta repeat (WD40) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Fvb7-1 - View
Fragaria x ananassa FAN06G1785 PF00400//PF00642 - WD domain, G-beta repeat (WD40) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Fvb7-2 - View
Fragaria x ananassa FAN03G1833 PF00400//PF00642 - WD domain, G-beta repeat (WD40) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Fvb7-3 + View
Fragaria x ananassa FAN01G1359 PF00400//PF00642 - WD domain, G-beta repeat (WD40) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Fvb7-4 + View
Fragaria x ananassa FAN06G4225 PF00400//PF00642 - WD domain, G-beta repeat (WD40) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Fvb7-2 - View
Fragaria vesca FvH4_7g28880 KOG0274//KOG0315//KOG0645 - Cdc4 and related F-box and WD-40 proteins // G-protein beta subunit-like protein (contains WD40 repeats) // WD40 repeat protein Fvb7 - View
Gossypium hirsutum Gohir.D09G040300 PTHR22844//PTHR22844:SF178 - F-BOX AND WD40 DOMAIN PROTEIN // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED D09 - View
Gossypium hirsutum Gohir.A12G261400 PTHR22844//PTHR22844:SF178 - F-BOX AND WD40 DOMAIN PROTEIN // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED A12 + View
Gossypium hirsutum Gohir.D12G262300 PTHR22844//PTHR22844:SF178 - F-BOX AND WD40 DOMAIN PROTEIN // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED D12 + View
Gossypium hirsutum Gohir.A09G039200 PTHR22844//PTHR22844:SF178 - F-BOX AND WD40 DOMAIN PROTEIN // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED A09 + View
Glycine max Glyma.16G199300 PTHR22844//PTHR22844:SF178 - F-BOX AND WD40 DOMAIN PROTEIN // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED Gm16 - View
Glycine max Glyma.09G148000 PTHR22844//PTHR22844:SF178 - F-BOX AND WD40 DOMAIN PROTEIN // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED Gm09 + View
Gossypium raimondii Gorai.008G281100 Chr08 + View
Hydrangea macrophylla Hma1.2p1_0270F.1_g108580 Hma1.2p1_0270F.1 + View
Hydrangea macrophylla Hma1.2p1_0099F.1_g048650 Hma1.2p1_0099F.1 + View
Lupinus albus Lalb_Chr03g0034211 PF00400//PF00642 - WD domain, G-beta repeat (WD40) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Lalb_Chr03 - View
Lupinus albus Lalb_Chr01g0008951 PTHR22844//PTHR22844:SF178 - F-BOX AND WD40 DOMAIN PROTEIN // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED Lalb_Chr01 - View
Lupinus albus Lalb_Chr19g0131101 PF00400//PF00642 - WD domain, G-beta repeat (WD40) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Lalb_Chr19 + View
Lotus japonicus Lj2g0003257 PTHR22844//PTHR22844:SF178 - F-BOX AND WD40 DOMAIN PROTEIN // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED chr2 + View
Lonicera japonica Lj1C989T12 GWHAAZE00000001 - View
Lonicera japonica Lj8A30G93 GWHAAZE00000008 + View
Lonicera japonica Lj9A576T40 GWHAAZE00000009 - View
Lactuca sativa Lsat_1_v5_gn_8_7660 PTHR22844:SF178 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED Lsat_1_v8_lg_8 + View
Magnolia biondii MBI04_g40840_MAGBIO AED:0.22 Chr04 + View
Magnolia biondii MBI12_g02096_MAGBIO AED:0.19 Chr12 + View
Malus domestica MD01G1195600 zinc finger WD40 repeat protein 1 Chr01 - View
Malus domestica MD07G1262400 zinc finger WD40 repeat protein 1 Chr07 - View
Manihot esculenta Manes.06G142500 Chromosome06 - View
Medicago truncatula Medtr6g465150 zinc finger CCCH domain protein chr6 - View
Nelumbo nucifera Nn6g34285 chr6 + View
Olea europaea Oeu030135.1 chr11 + View
Olea europaea Oeu047973.1 chr1 - View
Oryza sativa ssp. japonica Os04g0572700 Similar to DNA-directed RNA polymerase. chr04 + View
Petunia axillaris Peaxi162Scf00648g00315 Zinc finger CCCH domain-containing protein 48 Peaxi162Scf00648 + View
Prunus persica Prupe.2G153300 Pp02 - View
Prunus persica Prupe.2G288900 PF00400//PF00642 - WD domain, G-beta repeat (WD40) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) Pp02 - View
Populus trichocarpa Potri.012G134800 PTHR22844//PTHR22844:SF178 - F-BOX AND WD40 DOMAIN PROTEIN // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED Chr12 + View
Populus trichocarpa Potri.015G137200 KOG0315//KOG0645//KOG1407 - G-protein beta subunit-like protein (contains WD40 repeats) // WD40 repeat protein // WD40 repeat protein Chr15 + View
Phaseolus vulgaris Phvul.004G122600 PTHR22844:SF178 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED Chr04 + View
Quercus lobata QL09p015433 9 - View
Rosa chinensis RcHm_v2.0_Chr1g0376561 RcHm_v2.0_Chr1 - View
Rhododendron simsii Rhsim07G0021900 chr07 + View
Rhododendron simsii Rhsim03G0176000 chr03 - View
Salvia bowleyana SalBow4G1278 GWHASIU00000008 + View
Salix brachista Sabra15G0148800 GWHAAZH00000015 + View
Salix brachista Sabra14G0054600 GWHAAZH00000014 - View
Salix brachista Sabra12G0101400 GWHAAZH00000012 + View
Simmondsia chinensis Sc13g0008340 GWHAASQ00000013 - View
Solanum lycopersicum Solyc03g026350.3 Zinc finger transcription factor 24 SL4.0ch03 + View
Schrenkiella parvula Sp6g14230 PTHR22844:SF178 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED ch6-6 - View
Schrenkiella parvula Sp7g23490 PTHR22844:SF178 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-RELATED ch7-4 - View
Solanum pennellii Sopen03g005250 zinc finger WD40 repeat protein 1 (ZFWD1) | FUNCTIONS IN: zinc ion binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: xylem | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , Zinc finger, CCCH-type , WD40 repeat, conserved site , WD40 repeat , G-protein beta WD-40 repeat, region , WD40 repeat-like-containing domain , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG400014305 F-box and wd40 domain protein ST4.03ch03 - View
Selenicereus undatus Hund11777 Scaffold_33679 + View
Trochodendron aralioides TAR375G0479 group15 - View
Trochodendron aralioides TAR629G2728 group0 - View
Theobroma cacao Thecc.03G169200 Zinc finger WD40 repeat protein 1 Chromosome_3 - View
Tarenaya hassleriana THA.LOC104825089 zinc finger CCCH domain-containing protein 48 NW_010966986.1 - View
Tarenaya hassleriana THA.LOC104811483 zinc finger CCCH domain-containing protein 48-like isoform X1 NW_010965372.1 + View
Tarenaya hassleriana THA.LOC104798733 zinc finger CCCH domain-containing protein 48-like isoform X2 NW_010968263.1 - View
Tripterygium wilfordii TWI14G1133 NC_052249.1 - View
Tripterygium wilfordii TWI23G0350 NC_052239.1 + View
Utricularia gibba unitig_37.g11949 unitig_37 - View
Vaccinium macrocarpon vmacro06748 Similar to ZFWD1: Zinc finger CCCH domain-containing protein 48 (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro13344 Similar to Os02g0677700: Zinc finger CCCH domain-containing protein 17 (Oryza sativa subsp. japonica OX%3D39947) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0464G0868 CM024077.1 + View
Vitis vinifera GSVIVG01018431001 chr16 + View