Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold31G12668 scaffold31 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G3890 LG-7 + View
Acer truncatum Atru.chr7.1737 chr7 + View
Actinidia chinensis Actinidia30241 Lachesis_group18 + View
Arabidopsis lyrata AL1G31750 scaffold_1 + View
Avicennia marina MSTRG.10499 ScioBoG_13798_HRSCAF_13862 - View
Avicennia marina MSTRG.19446 ScioBoG_25048_HRSCAF_25167 - View
Amaranthus hybridus Ah.09g229080 AmaHy_arrow1_Scaffold_9 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.N1SUXZ PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) arahy.Tifrunner.gnm1.Arahy.14 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.FH7GLE PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) arahy.Tifrunner.gnm1.Arahy.03 + View
Arabidopsis thaliana AT1G19170 Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B LOCATED IN: mitochondrion%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Parallel beta-helix repeat (InterPro:IPR006626)%2C Pectin lyase fold (InterPro:IPR012334)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G42950.1)%3B Has 4384 Blast hits to 4371 proteins in 509 species: Archae - 6%3B Bacteria - 1552%3B Metazoa - 14%3B Fungi - 1224%3B Plants - 1428%3B Viruses - 0%3B Other Eukaryotes - 160 (source: NCBI BLink). Chr1 + View
Brassica oleracea BolC8t49544H C8 + View
Camellia sinensis var. sinensis CSS0024349 PREDICTED: probable polygalacturonase-like [Fragaria vesca subsp. vesca] Chr2 + View
Capsicum annuum CAN.G1661.24 PGAv.1.6.scaffold1661 + View
Cicer arietinum L. Ca_09312_v3 Ca_LG3_v3 + View
Cicer arietinum L. Ca_02218_v3 Ca_LG1_v3 + View
Corylus avellana Haze_26035 Similar to GSVIVT00026920001: Probable polygalacturonase (Vitis vinifera OX%3D29760) 8 + View
Coffea canephora Cc06_g12490 Putative Probable polygalacturonase chr6 + View
Citrus clementina Ciclev10008093m.g scaffold_1 + View
Carpinus fangiana Cfa002964 Cfa01 - View
Cardamine hirsuta CARHR019770 Pectin lyase-like protein Chr1 + View
Carya illinoinensis CiPaw.03G203500 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Chr03 - View
Carya illinoinensis CiPaw.04G141500 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Chr04 - View
Cucumis melo MELO3C015537.2 Glycoside hydrolase family 28 family protein chr02 + View
Chenopodium quinoa AUR62028299 GSVIVT00026920001: Probable polygalacturonase C_Quinoa_Scaffold_1426 - View
Cucumis sativus L. CsaV3_1G041240 Pectin lyase-like superfamily protein chr1 + View
Davidia involucrata Dinv42415 GWHABJS00000013 + View
Davidia involucrata Dinv25536 GWHABJS00000001 + View
Durio zibethinus Duzib168G1509 NW_019168159.1 - View
Durio zibethinus Duzib187G0865 NW_019167860.1 + View
Durio zibethinus Duzib150G0285 NW_019167882.1 - View
Erigeron canadensis ECA236G4576 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.C00786 Chr03 - View
Erythranthe guttata Migut.J00906 scaffold_10 - View
Erythranthe guttata Migut.L01581 scaffold_12 + View
Fragaria x ananassa FAN19G2803 PF00295//PF12708 - Glycosyl hydrolases family 28 (Glyco_hydro_28) // Pectate lyase superfamily protein (Pectate_lyase_3) Fvb1-4 + View
Fragaria x ananassa FAN28G2211 PF12708//PF13229 - Pectate lyase superfamily protein (Pectate_lyase_3) // Right handed beta helix region (Beta_helix) Fvb1-1 - View
Fragaria x ananassa FAN23G2424 PF12708//PF13229 - Pectate lyase superfamily protein (Pectate_lyase_3) // Right handed beta helix region (Beta_helix) Fvb1-3 + View
Fragaria x ananassa FAN26G0015 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Fvb1-2 - View
Fragaria vesca FvH4_1g09050 PF12708//PF13229 - Pectate lyase superfamily protein (Pectate_lyase_3) // Right handed beta helix region (Beta_helix) Fvb1 + View
Gossypium hirsutum Gohir.A06G078300 PF13229 - Right handed beta helix region (Beta_helix) A06 + View
Gossypium hirsutum Gohir.D06G077400 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) D06 + View
Gossypium hirsutum Gohir.A07G015900 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) A07 + View
Glycine max Glyma.15G179500 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Gm15 + View
Glycine max Glyma.13G111900 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Gm13 + View
Gossypium raimondii Gorai.001G016500 Chr01 + View
Gossypium raimondii Gorai.010G090400 Chr10 + View
Helianthus annuus HanXRQChr04g0125911 Probable pectin lyase-like superfamily protein HanXRQChr04 - View
Lupinus albus Lalb_Chr11g0074151 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Lalb_Chr11 - View
Lupinus albus Lalb_Chr12g0200261 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Lalb_Chr12 + View
Lupinus albus Lalb_Chr13g0299351 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Lalb_Chr13 - View
Lotus japonicus Lj4g0028097 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) chr4 - View
Lonicera japonica Lj7A689T74 GWHAAZE00000007 + View
Lonicera japonica Lj4A915T64 GWHAAZE00000004 + View
Lactuca sativa Lsat_1_v5_gn_8_85760 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Lsat_1_v8_lg_8 - View
Lactuca sativa Lsat_1_v5_gn_5_139581 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Lsat_1_v8_lg_5 - View
Magnolia biondii MBI13_g00693_MAGBIO AED:0.08 Chr13 + View
Magnolia biondii MBI19_g05285_MAGBIO AED:0.11 Chr19 + View
Malus domestica MD15G1220300 Pectin lyase-like superfamily protein Chr15 + View
Malus domestica MD02G1096000 Pectin lyase-like superfamily protein Chr02 + View
Medicago truncatula Medtr4g124980 pectin lyase superfamily protein chr4 - View
Nicotiana tabacum Nitab4.5_0000073g0280 Pectin lyase fold, Glycoside hydrolase, family 28, Pectin lyase fold/virulence factor, Parallel beta-helix repeat Nitab4.5_0000073 + View
Petunia axillaris Peaxi162Scf00928g00129 Pectin lyase-like superfamily protein Peaxi162Scf00928 + View
Petunia axillaris Peaxi162Scf00191g01426 Pectin lyase-like superfamily protein Peaxi162Scf00191 - View
Punica granatum PGR142G0639 NC_045128.1 + View
Prunus persica Prupe.7G195000 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Pp07 - View
Populus trichocarpa Potri.006G139500 PTHR31339:SF0 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN Chr06 - View
Phaseolus vulgaris Phvul.009G225400 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Chr09 - View
Phaseolus vulgaris Phvul.003G129300 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Chr03 - View
Quercus lobata QL11p001254 11 + View
Rhododendron simsii Rhsim05G0004800 chr05 - View
Salvia bowleyana SalBow6G3693 GWHASIU00000002 - View
Sechium edule Sed0010452 LG12 - View
Solanum lycopersicum Solyc12g009210.2 Pectin lyase-like superfamily protein (AHRD V3.3 *** A0A2U1NPR9_ARTAN) SL4.0ch12 + View
Solanum lycopersicum Solyc07g042160.3 Pectin lyase-like superfamily protein (AHRD V3.3 *** A0A2U1LH94_ARTAN) SL4.0ch07 + View
Schrenkiella parvula Sp1g17070 PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) ch1-1 + View
Solanum pennellii Sopen07g021760 Pectin lyase-like superfamily protein | FUNCTIONS IN: polygalacturonase activity | INVOLVED IN: carbohydrate metabolic process | LOCATED IN: endomembrane system | EXPRESSED IN: 18 plant structures | EXPRESSED DURING: 8 growth stages | CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor , Glycoside hydrolase, family 28 , Pectin lyase fold , Parallel beta-helix repeat | BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein Spenn-ch07 + View
Solanum pennellii Sopen12g004160 Pectin lyase-like superfamily protein | FUNCTIONS IN: polygalacturonase activity | INVOLVED IN: carbohydrate metabolic process | LOCATED IN: mitochondrion | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor , Parallel beta-helix repeat , Pectin lyase fold , Glycoside hydrolase, family 28 | BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein Spenn-ch12 + View
Solanum tuberosum PGSC0003DMG400016038 Polygalacturonase ST4.03ch07 + View
Solanum tuberosum PGSC0003DMG400002931 Polygalacturonase ST4.03ch12 - View
Trochodendron aralioides TAR624G1060 group9 - View
Theobroma cacao Thecc.09G073700 Pectin lyase-like superfamily protein Chromosome_9 - View
Trifolium pratense TPR.G12713 Tp57577_TGAC_v2_LG2 - View
Tripterygium wilfordii TWI63G1669 NC_052240.1 + View
Vaccinium macrocarpon vmacro17116 Similar to GSVIVT00026920001: Probable polygalacturonase (Vitis vinifera OX%3D29760) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1215G2577 CM024074.1 + View
Vitis vinifera GSVIVG01015044001 chr11 - View