Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold227G43172 scaffold227 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G6590 LG-4 + View
Actinidia chinensis Actinidia17083 Lachesis_group28 - View
Actinidia chinensis Actinidia15529 Lachesis_group26 - View
Arabidopsis lyrata AL1G33920 scaffold_1 + View
Arabidopsis lyrata AL2G36640 scaffold_2 + View
Avicennia marina MSTRG.24520 ScioBoG_4088_HRSCAF_4107 + View
Arabidopsis thaliana AT1G76500 Putative AT-hook DNA-binding family protein Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light SUPPRESSOR OF PHYB-4#3 (SOB3)%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: photomorphogenesis%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175)%2C AT hook%2C DNA-binding motif (InterPro:IPR017956)%2C Predicted AT-hook DNA-binding (InterPro:IPR014476)%3B BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT1G20900.1)%3B Has 2179 Blast hits to 1721 proteins in 190 species: Archae - 0%3B Bacteria - 553%3B Metazoa - 266%3B Fungi - 109%3B Plants - 845%3B Viruses - 16%3B Other Eukaryotes - 390 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB07g32085 ChrB07 + View
Brassica carinata BcaC05g25999 ChrC05 + View
Brassica carinata BcaC08g47239 ChrC08 - View
Brassica napus A06p16900 A06 + View
Brassica napus A07p42170 A07 + View
Brassica rapa BraA06t24799Z A06 + View
Beta vulgaris EL10Ac1g01864 PTHR31100//PTHR31100:SF5 - FAMILY NOT NAMED // AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 29-RELATED Chr1_EL10_PGA_scaffold3 - View
Camellia sinensis var. sinensis CSS0033715 DNA binding protein, putative [Ricinus communis] Chr4 - View
Carpinus fangiana Cfa014144 Cfa05 + View
Cardamine hirsuta CARHR070050 AT hook motif DNA-binding family protein Chr2 + View
Cardamine hirsuta CARHR021330 Predicted AT-hook DNA-binding family protein Chr1 + View
Capsella rubella Carub.0001s2037 PTHR31100//PTHR31100:SF5 - FAMILY NOT NAMED // AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 29-RELATED scaffold_1 + View
Daucus carota DCAR_013946 hypothetical protein DCARv2_Chr4 - View
Davidia involucrata Dinv23324 GWHABJS00000020 - View
Eucalyptus grandis Eucgr.F03609 Chr06 + View
Erythranthe guttata Migut.N02991 scaffold_14 + View
Eutrema salsugineum Thhalv10008220m.g PTHR31100:SF5 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 29-RELATED scaffold_5 - View
Eutrema salsugineum Thhalv10019495m.g PTHR31100:SF5 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 29-RELATED scaffold_9 - View
Fragaria x ananassa FAN04G2062 PTHR31100//PTHR31100:SF5 - FAMILY NOT NAMED // AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 29-RELATED Fvb5-4 + View
Fragaria x ananassa FAN13G0329 PTHR31100//PTHR31100:SF5 - FAMILY NOT NAMED // AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 29-RELATED Fvb5-2 + View
Magnolia biondii MBI04_g40274_MAGBIO AED:0.06 Chr04 + View
Manihot esculenta Manes.05G129000 Chromosome05 - View
Nelumbo nucifera Nn6g31609 chr6 - View
Nelumbo nucifera Nn5g31058 chr5 + View
Punica granatum PGR031G0227 NC_045127.1 + View
Punica granatum PGR083G2658 NC_045133.1 + View
Prunus persica Prupe.5G004600 PTHR31100:SF5 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 29-RELATED Pp05 - View
Populus trichocarpa Potri.005G257200 PTHR31100//PTHR31100:SF5 - FAMILY NOT NAMED // AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 29-RELATED Chr05 + View
Populus trichocarpa Potri.002G003800 PTHR31100//PTHR31100:SF5 - FAMILY NOT NAMED // AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 29-RELATED Chr02 - View
Rosa chinensis RcHm_v2.0_Chr7g0216901 RcHm_v2.0_Chr7 + View
Salix brachista Sabra05G0199100 GWHAAZH00000005 + View
Salix brachista Sabra02G0002700 GWHAAZH00000002 - View
Schrenkiella parvula Sp1g18600 PTHR31100//PTHR31100:SF5 - FAMILY NOT NAMED // AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 29-RELATED ch1-1 + View
Schrenkiella parvula Sp5g31660 PTHR31100//PTHR31100:SF5 - FAMILY NOT NAMED // AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 29-RELATED ch5-7 + View
Theobroma cacao Thecc.08G098800 AT-hook DNA-binding family protein Chromosome_8 - View
Tarenaya hassleriana THA.LOC104812014 AT-hook motif nuclear-localized protein 27-like NW_010965372.1 + View
Tripterygium wilfordii TWI12G0473 NC_052243.1 - View
Vitis vinifera GSVIVG01013438001 chr18 - View