Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold64G21900 scaffold64 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr7.2398 chr7 + View
Acer truncatum Atru.chr7.1827 chr7 - View
Actinidia chinensis Actinidia21990 Lachesis_group15 - View
Actinidia chinensis Actinidia13244 Lachesis_group18 - View
Arabidopsis lyrata AL7G19380 scaffold_7 - View
Arabidopsis lyrata AL4G17020 scaffold_4 + View
Avicennia marina MSTRG.25995 ScioBoG_4119_HRSCAF_4138 + View
Aquilegia oxysepala Aqoxy7G03717 CHR07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.FKHD3P PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) arahy.Tifrunner.gnm1.Arahy.10 - View
Arabidopsis thaliana AT4G32430 Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1)%3B Has 44749 Blast hits to 13591 proteins in 248 species: Archae - 1%3B Bacteria - 28%3B Metazoa - 59%3B Fungi - 99%3B Plants - 43967%3B Viruses - 0%3B Other Eukaryotes - 595 (source: NCBI BLink). Chr4 + View
Arabidopsis thaliana AT2G25580 Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G32450.1)%3B Has 21306 Blast hits to 10572 proteins in 176 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 6%3B Fungi - 21%3B Plants - 21172%3B Viruses - 0%3B Other Eukaryotes - 98 (source: NCBI BLink). Chr2 + View
Brassica carinata BcaC09g52028 ChrC09 + View
Brassica napus A01p05940 A01 - View
Brassica napus C01p06550 C01 - View
Brassica oleracea BolC1t00648H C1 - View
Brassica rapa BraA01t00560Z A01 - View
Camellia sinensis var. sinensis CSS0022708 PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera] Chr14 - View
Cannabis sativa CANSAT25G2161 NC_044370.1 - View
Coffea canephora Cc08_g00860 Putative Pentatricopeptide repeat-containing protein At4g21065 chr8 - View
Citrus clementina Ciclev10007505m.g scaffold_1 - View
Citrus clementina Ciclev10010438m.g scaffold_1 - View
Cardamine hirsuta CARHR240350 Pentatricopeptide repeat-containing protein Chr7 + View
Carya illinoinensis CiPaw.03G207000 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr03 - View
Carya illinoinensis CiPaw.07G221800 PF12854//PF13041//PF13812//PF14432 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr07 + View
Citrullus lanatus ClCG08G013260 Pentatricopeptide repeat-containing protein CG_Chr08 + View
Citrullus lanatus ClCG05G015870 CTC-interacting domain 7 LENGTH=567 CG_Chr05 + View
Cucumis melo MELO3C016924.2 pentatricopeptide repeat-containing protein At4g33170-like chr07 - View
Cucumis melo MELO3C010354.2 Pentatricopeptide repeat-containing protein chr02 + View
Capsella rubella Carub.0007s0814 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_7 - View
Cucumis sativus L. CsaV3_2G031990 Pentatricopeptide repeat-containing protein chr2 + View
Cucumis sativus L. CsaV3_4G036160 Polyadenylate-binding protein-interacting protein 7 chr4 + View
Davidia involucrata Dinv41848 GWHABJS00000002 + View
Davidia involucrata Dinv40933 GWHABJS00000011 - View
Davidia involucrata Dinv36531 GWHABJS00000001 + View
Durio zibethinus Duzib187G1939 NW_019167860.1 - View
Durio zibethinus Duzib168G1236 NW_019168159.1 + View
Durio zibethinus Duzib168G1373 NW_019168159.1 + View
Durio zibethinus Duzib150G1238 NW_019167882.1 + View
Erigeron canadensis ECA240G1094 Conyza_canadensis_scaffold:5 - View
Eucalyptus grandis Eucgr.C00743 Chr03 + View
Erythranthe guttata Migut.A00058 scaffold_1 - View
Erythranthe guttata Migut.E01787 scaffold_5 + View
Eutrema salsugineum Thhalv10024867m.g PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_1 - View
Fragaria x ananassa FAN15G0328 PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb2-4 - View
Fragaria x ananassa FAN15G1549 KOG2401 - Predicted MutS-related protein involved in mismatch repair Fvb2-4 - View
Fragaria x ananassa FAN24G2651 KOG2401 - Predicted MutS-related protein involved in mismatch repair Fvb2-2 + View
Fragaria x ananassa FAN27G1997 PF01535//PF03140//PF12854//PF13041//PF14432 - PPR repeat (PPR) // Plant protein of unknown function (DUF247) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb2-1 - View
Fragaria x ananassa FAN27G1566 PF01535//PF01713//PF08590//PF13041//PF14432 - PPR repeat (PPR) // Smr domain (Smr) // Domain of unknown function (DUF1771) (DUF1771) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb2-1 - View
Fragaria vesca FvH4_2g29361 PF12854//PF13041//PF14432 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb2 - View
Gossypium hirsutum Gohir.D05G039400 KOG2401 - Predicted MutS-related protein involved in mismatch repair D05 - View
Gossypium hirsutum Gohir.A13G188300 PF01713//PF08590 - Smr domain (Smr) // Domain of unknown function (DUF1771) (DUF1771) A13 + View
Gossypium hirsutum Gohir.D13G195200 PF01713//PF08590 - Smr domain (Smr) // Domain of unknown function (DUF1771) (DUF1771) D13 + View
Gossypium hirsutum Gohir.D05G056300 PF12854//PF13041//PF13812//PF14432 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) D05 + View
Gossypium hirsutum Gohir.A05G037900 KOG2401 - Predicted MutS-related protein involved in mismatch repair A05 - View
Glycine max Glyma.17G209700 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Gm17 + View
Glycine max Glyma.04G057200 PF01713//PF08590 - Smr domain (Smr) // Domain of unknown function (DUF1771) (DUF1771) Gm04 + View
Glycine max Glyma.06G057700 PF01713//PF08590 - Smr domain (Smr) // Domain of unknown function (DUF1771) (DUF1771) Gm06 + View
Gossypium raimondii Gorai.013G221300 Chr13 + View
Gossypium raimondii Gorai.009G039900 Chr09 - View
Gossypium raimondii Gorai.009G057300 Chr09 + View
Lupinus albus Lalb_Chr08g0244701 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Lalb_Chr08 - View
Lupinus albus Lalb_Chr13g0301991 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lalb_Chr13 + View
Lupinus albus Lalb_Chr11g0063391 KOG2401 - Predicted MutS-related protein involved in mismatch repair Lalb_Chr11 + View
Lotus japonicus Lj1g0016029 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) chr1 - View
Lotus japonicus Lj5g0009234 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) chr5 + View
Lotus japonicus Lj6g0002163 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) chr6 + View
Lonicera japonica Lj7P687T25 GWHAAZE00000007 + View
Lonicera japonica Lj7P209T22 GWHAAZE00000007 - View
Lonicera japonica Lj7C417G11 GWHAAZE00000007 + View
Lactuca sativa Lsat_1_v5_gn_7_59080 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lsat_1_v8_lg_7 - View
Malus domestica MD15G1047600 Tetratricopeptide repeat (TPR)-like superfamily protein Chr15 - View
Manihot esculenta Manes.03G016100 Chromosome03 - View
Manihot esculenta Manes.16G087000 Chromosome16 + View
Medicago truncatula Medtr3g105370 pentatricopeptide (PPR) repeat protein chr3 + View
Medicago truncatula Medtr1g012380 PPR containing plant-like protein chr1 + View
Petunia axillaris Peaxi162Scf00643g00039 Pentatricopeptide repeat-containing protein Peaxi162Scf00643 - View
Prunus persica Prupe.1G479200 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Pp01 + View
Prunus persica Prupe.1G402000 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Pp01 - View
Pisum sativum Psat6g029560 DYW family of nucleic acid deaminases chr6LG2 - View
Pisum sativum Psat5g028440 Pentatricopeptide repeat chr5LG3 - View
Populus trichocarpa Potri.006G252400 PF12854//PF13041//PF14432 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr06 + View
Phaseolus vulgaris Phvul.009G083600 KOG2401 - Predicted MutS-related protein involved in mismatch repair Chr09 + View
Phaseolus vulgaris Phvul.001G051800 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr01 - View
Quercus lobata QL02p017294 CM012294 + View
Quercus lobata QL02p022121 CM012294 - View
Rosa chinensis RcHm_v2.0_Chr6g0312051 RcHm_v2.0_Chr6 + View
Rosa chinensis RcHm_v2.0_Chr6g0298171 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim02G0199300 chr02 - View
Salvia bowleyana SalBow1G0904 GWHASIU00000001 + View
Salvia bowleyana SalBow4G2835 GWHASIU00000008 - View
Salix brachista Sabra06G0197300 GWHAAZH00000006 + View
Simmondsia chinensis Sc09g0008430 GWHAASQ00000009 + View
Sechium edule Sed0025024 LG05 + View
Sechium edule Sed0004805 LG13 + View
Sechium edule Sed0020051 LG03 + View
Solanum lycopersicum Solyc06g066080.1 Pentatricopeptide repeat (AHRD V3.3 *** A0A200QS26_9MAGN) SL4.0ch06 - View
Solanum lycopersicum Solyc08g061320.3 Polyadenylate-binding protein-interacting protein 7 (AHRD V3.3 *** A0A2G3BRE1_CAPCH) SL4.0ch08 - View
Schrenkiella parvula Sp7g30220 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) ch7-5 + View
Schrenkiella parvula Sp4g04850 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) ch4-2 - View
Solanum pennellii Sopen08g016700 smr (Small MutS Related) domain-containing protein mRNA, complete cds | CID7 | FUNCTIONS IN: damaged DNA binding, protein binding, ATP binding | INVOLVED IN: mismatch repair | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal , Region of unknown function DUF1771 | BEST Arabidopsis thaliana protein match is: PRLI-interacting factor, putative Spenn-ch08 - View
Solanum pennellii Sopen06g024560 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch06 - View
Solanum pennellii Sopen07g004410 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch07 - View
Solanum tuberosum PGSC0003DMG400020786 Conserved gene of unknown function ST4.03ch08 - View
Solanum tuberosum PGSC0003DMG400020461 Conserved gene of unknown function ST4.03ch06 + View
Trochodendron aralioides TAR626G1342 group3 - View
Trochodendron aralioides TAR624G0865 group9 - View
Trochodendron aralioides TAR383G0325 group10 + View
Theobroma cacao Thecc.09G065500 CTC-interacting domain 7 Chromosome_9 + View
Theobroma cacao Thecc.09G027200 Chromosome_9 - View
Tarenaya hassleriana THA.LOC104803665 pentatricopeptide repeat-containing protein At2g25580-like NW_010971389.1 - View
Trifolium pratense TPR.G3546 Tp57577_TGAC_v2_LG7 + View
Trifolium pratense TPR.G15648 Tp57577_TGAC_v2_LG1 + View
Tripterygium wilfordii TWI63G1385 NC_052240.1 - View
Tripterygium wilfordii TWI32G0293 NC_052254.1 + View
Tripterygium wilfordii TWI32G1352 NC_052254.1 - View
Vaccinium macrocarpon vmacro11156 Similar to PCMP-H28: Pentatricopeptide repeat-containing protein At4g21065 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1309G1461 CM024072.1 - View
Vigna mungo VMungo1309G0080 CM024072.1 + View
Vitis vinifera GSVIVG01035490001 chr4 + View