Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold108G30945 scaffold108 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G14180 LG-7 + View
Acer truncatum Atru.chr3.1201 chr3 + View
Acer truncatum Atru.chr13.956 chr13 + View
Actinidia chinensis Actinidia25292 Lachesis_group11 + View
Actinidia chinensis Actinidia06502 Lachesis_group16 - View
Arabidopsis lyrata AL4G12160 scaffold_4 - View
Avicennia marina MSTRG.3721 ScioBoG_102836_HRSCAF_103072 + View
Avicennia marina MSTRG.23389 ScioBoG_3895_HRSCAF_3912 - View
Avicennia marina MSTRG.2609 ScioBoG_102835_HRSCAF_103059 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.6IG7E5 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B arahy.Tifrunner.gnm1.Arahy.05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.DBQ046 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XX92E1 PTHR32018:SF1 - F21M12.27 PROTEIN-RELATED arahy.Tifrunner.gnm1.Arahy.08 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4B7F2K 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B arahy.Tifrunner.gnm1.Arahy.15 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4A1W4F K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.BCG363 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) arahy.Tifrunner.gnm1.Arahy.17 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.N9L63V K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) arahy.Tifrunner.gnm1.Arahy.17 - View
Arabidopsis thaliana AT2G22620 Rhamnogalacturonate lyase family protein Rhamnogalacturonate lyase family protein%3B FUNCTIONS IN: lyase activity%3B INVOLVED IN: carbohydrate metabolic process%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013)%2C Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT4G37950.1)%3B Has 306 Blast hits to 289 proteins in 68 species: Archae - 0%3B Bacteria - 51%3B Metazoa - 0%3B Fungi - 87%3B Plants - 167%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink). Chr2 - View
Arabidopsis thaliana AT4G37950 Rhamnogalacturonate lyase family protein Rhamnogalacturonate lyase family protein%3B CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325)%2C Carbohydrate-binding-like fold (InterPro:IPR013784)%2C Galactose-binding domain-like (InterPro:IPR008979)%3B BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT2G22620.1)%3B Has 315 Blast hits to 298 proteins in 69 species: Archae - 0%3B Bacteria - 55%3B Metazoa - 0%3B Fungi - 92%3B Plants - 168%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr4 + View
Brassica carinata BcaC01g00354 ChrC01 + View
Brassica carinata BcaB03g12317 ChrB03 + View
Brassica carinata BcaC07g41045 ChrC07 + View
Brassica napus A09p57380 A09 + View
Brassica napus C04p51850 C04 - View
Brassica napus A08p22980 A08 + View
Brassica napus C08p40460 C08 + View
Brassica oleracea BolC8t51617H C8 + View
Brassica rapa BraA08t34259Z A08 + View
Brassica rapa BraA09t41130Z A09 + View
Camellia sinensis var. sinensis CSS0010579 PREDICTED: probable rhamnogalacturonate lyase B isoform X2 [Sesamum indicum] Chr1 + View
Cannabis sativa CANSAT01G2345 NC_044373.1 + View
Corylus avellana Haze_03913 Protein of unknown function 2 - View
Corylus avellana Haze_22492 Similar to LKHA4: Leucine aminopeptidase (Arabidopsis thaliana OX%3D3702) 3 - View
Coffea canephora Cc07_g13600 Putative Rhamnogalacturonate lyase family protein chr7 + View
Citrus clementina Ciclev10025074m.g scaffold_7 + View
Citrus clementina Ciclev10003466m.g scaffold_5 + View
Carpinus fangiana Cfa013818 Cfa05 - View
Carpinus fangiana Cfa006845 Cfa02 + View
Cardamine hirsuta CARHR246370 Rhamnogalacturonate lyase family protein Chr7 + View
Cardamine hirsuta CARHR113840 Rhamnogalacturonate lyase family protein Chr4 - View
Carya illinoinensis CiPaw.08G057400 PTHR32018:SF4 - LG27/30-LIKE GENE Chr08 - View
Carya illinoinensis CiPaw.07G162500 PTHR32018//PTHR32018:SF8 - FAMILY NOT NAMED // RHAMNOGALACTURONATE LYASE-LIKE PROTEIN Chr07 + View
Carya illinoinensis CiPaw.08G143900 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) Chr08 - View
Carya illinoinensis CiPaw.07G043700 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) Chr07 + View
Citrullus lanatus ClCG01G018240 Rhamnogalacturonate lyase CG_Chr01 + View
Citrullus lanatus ClCG08G011530 Rhamnogalacturonate lyase CG_Chr08 + View
Cucumis melo MELO3C007701.2 Rhamnogalacturonate lyase chr08 + View
Carica papaya Cpa.g.sc21.45 supercontig_21 - View
Capsella rubella Carub.0004s0178 scaffold_4 - View
Capsella rubella Carub.0007s0219 PTHR32018:SF6 - GALACTOSE-BINDING PROTEIN-RELATED scaffold_7 + View
Cucumis sativus L. CsaV3_6G044820 Rhamnogalacturonate lyase family protein chr6 + View
Cucumis sativus L. CsaV3_2G030120 Rhamnogalacturonate lyase family protein chr2 + View
Cucumis sativus L. CsaV3_3G006970 Rhamnogalacturonate lyase family protein chr3 - View
Daucus carota DCAR_003436 hypothetical protein DCARv2_Chr1 + View
Davidia involucrata Dinv44879 GWHABJS00000002 - View
Davidia involucrata Dinv27011 GWHABJS00000014 + View
Davidia involucrata Dinv36968 GWHABJS00000021 + View
Durio zibethinus Duzib187G1173 NW_019167860.1 - View
Durio zibethinus Duzib093G0640 NW_019167937.1 - View
Durio zibethinus Duzib264G0400 NW_019167960.1 - View
Durio zibethinus Duzib147G0308 NW_019168470.1 - View
Eucalyptus grandis Eucgr.F00442 Chr06 + View
Eucalyptus grandis Eucgr.I00574 Chr09 - View
Erythranthe guttata Migut.H02267 scaffold_8 + View
Eutrema salsugineum Thhalv10000697m.g 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B scaffold_15 - View
Eutrema salsugineum Thhalv10024612m.g PTHR32018:SF6 - GALACTOSE-BINDING PROTEIN-RELATED scaffold_1 + View
Fragaria x ananassa FAN19G2835 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) Fvb1-4 + View
Fragaria x ananassa FAN28G1677 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B Fvb1-1 + View
Gossypium hirsutum Gohir.A05G216800 PTHR32018//PTHR32018:SF8 - FAMILY NOT NAMED // RHAMNOGALACTURONATE LYASE-LIKE PROTEIN A05 + View
Gossypium hirsutum Gohir.A11G207980 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B A11 - View
Gossypium hirsutum Gohir.D11G215400 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) D11 + View
Gossypium hirsutum Gohir.D05G220666 PTHR32018//PTHR32018:SF8 - FAMILY NOT NAMED // RHAMNOGALACTURONATE LYASE-LIKE PROTEIN D05 + View
Gossypium hirsutum Gohir.D06G029900 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B D06 + View
Gossypium hirsutum Gohir.A06G030600 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) A06 + View
Glycine max Glyma.08G275500 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) Gm08 + View
Glycine max Glyma.01G020800 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) Gm01 + View
Glycine max Glyma.09G201300 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B Gm09 - View
Glycine max Glyma.14G183400 PF06045//PF14686 - Rhamnogalacturonate lyase family (Rhamnogal_lyase) // Polysaccharide lyase family 4, domain II (fn3_3) Gm14 - View
Glycine max Glyma.02G216300 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) Gm02 - View
Glycine max Glyma.18G150600 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) Gm18 - View
Gossypium raimondii Gorai.007G231600 Chr07 + View
Gossypium raimondii Gorai.010G032900 Chr10 + View
Gossypium raimondii Gorai.009G227700 Chr09 + View
Lupinus albus Lalb_Chr09g0325841 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) Lalb_Chr09 + View
Lupinus albus Lalb_Chr05g0216221 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) Lalb_Chr05 + View
Lupinus albus Lalb_Chr05g0228581 K18195 - rhamnogalacturonan endolyase (RGL4, rhiE) Lalb_Chr05 - View
Lupinus albus Lalb_Chr08g0242621 PTHR32018//PTHR32018:SF1 - FAMILY NOT NAMED // F21M12.27 PROTEIN-RELATED Lalb_Chr08 - View
Lotus japonicus LjContig00408g0010326 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B Contig00408 + View
Lotus japonicus Lj2g0016894 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B chr2 + View
Lonicera japonica Lj4C85G7 GWHAAZE00000004 + View
Lonicera japonica Lj4A265T85 GWHAAZE00000004 - View
Lonicera japonica Lju188C12G5 GWHAAZE00000040 - View
Malus domestica MD15G1308100 Rhamnogalacturonate lyase family protein Chr15 + View
Malus domestica MD01G1043200 Rhamnogalacturonate lyase family protein Chr01 - View
Manihot esculenta Manes.13G102600 Chromosome13 - View
Manihot esculenta Manes.18G057400 Chromosome18 + View
Medicago truncatula Medtr8g068110 rhamnogalacturonate lyase B-like protein chr8 + View
Nelumbo nucifera Nn5g29810 chr5 + View
Nicotiana tabacum Nitab4.5_0000128g0030 Carbohydrate-binding-like fold, Galactose mutarotase-like domain, Carboxypeptidase, regulatory domain, Rhamnogalacturonate lyase Nitab4.5_0000128 + View
Punica granatum PGR102G1266 NC_045129.1 - View
Prunus persica Prupe.6G208400 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B Pp06 - View
Populus trichocarpa Potri.005G151500 PTHR32018//PTHR32018:SF8 - FAMILY NOT NAMED // RHAMNOGALACTURONATE LYASE-LIKE PROTEIN Chr05 + View
Phaseolus vulgaris Phvul.002G144400 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B Chr02 + View
Phaseolus vulgaris Phvul.008G183500 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B Chr08 - View
Rhododendron simsii Rhsim10G0175200 chr10 - View
Rhododendron simsii Rhsim07G0213900 chr07 - View
Rhododendron simsii Rhsim06G0069900 chr06 + View
Salvia bowleyana SalBow3G2650 GWHASIU00000006 + View
Simmondsia chinensis Sc16g0000670 GWHAASQ00000016 + View
Sechium edule Sed0020952 LG10 + View
Sechium edule Sed0024538 LG07 + View
Sechium edule Sed0000483 LG14 - View
Schrenkiella parvula Sp7g35600 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B ch7-6 + View
Schrenkiella parvula Sp4g01660 4.2.2.23 - Rhamnogalacturonan endolyase / Rhamnogalacturonase B ch4-1 - View
Solanum pennellii Sopen12g030080 Rhamnogalacturonate lyase family protein | CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase , Carbohydrate-binding-like fold , Galactose-binding domain-like | BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein Spenn-ch12 - View
Solanum pennellii Sopen04g006570 Rhamnogalacturonate lyase family protein | FUNCTIONS IN: lyase activity | INVOLVED IN: carbohydrate metabolic process | LOCATED IN: cellular_component unknown | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding , Rhamnogalacturonate lyase , Carbohydrate-binding-like fold , Galactose-binding domain-like | BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein Spenn-ch04 - View
Solanum tuberosum PGSC0003DMG400014600 Lyase ST4.03ch05 + View
Trochodendron aralioides TAR381G0763 group11 + View
Theobroma cacao Thecc.01G086400 Rhamnogalacturonate lyase family protein Chromosome_1 + View
Tarenaya hassleriana THA.LOC104824916 uncharacterized protein LOC104824916 NW_010966933.1 + View
Tripterygium wilfordii TWI53G1483 NC_052244.1 - View
Tripterygium wilfordii TWI56G0251 NC_052242.1 + View
Tripterygium wilfordii TWI36G1228 NC_052237.1 + View
Vaccinium macrocarpon vmacro07681 Similar to rhiE: Rhamnogalacturonate lyase (Dickeya dadantii (strain 3937) OX%3D198628) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G2780 CM024074.1 + View
Vigna mungo VMungo0251G1041 CM024069.1 + View
Vitis vinifera GSVIVG01009215001 chr18 - View