Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold124G33581 scaffold124 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G8960 LG-7 + View
Acer truncatum Atru.chr11.1335 chr11 - View
Actinidia chinensis Actinidia39817 Lachesis_group13 + View
Actinidia chinensis Actinidia14860 Lachesis_group14 + View
Arabidopsis lyrata AL1G39760 scaffold_1 + View
Aquilegia oxysepala Aqoxy3G00352 CHR03 - View
Arabidopsis thaliana AT1G25540 phytochrome and flowering time regulatory protein (PFT1) Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. PFT1 promotes flowering in CO dependent and independent pathways and integrates several environmental stimuli%2C such as light quality and JA-dependent defenses. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. Also shown to be a Mediator subunit regulating jasmonate-dependent defense. PHYTOCHROME AND FLOWERING TIME 1 (PFT1)%3B CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med25%2C von Willebrand factor type A (InterPro:IPR021419)%2C von Willebrand factor%2C type A (InterPro:IPR002035)%3B Has 144499 Blast hits to 47376 proteins in 2113 species: Archae - 36%3B Bacteria - 15041%3B Metazoa - 49547%3B Fungi - 14283%3B Plants - 10465%3B Viruses - 822%3B Other Eukaryotes - 54305 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC05g26654 ChrC05 + View
Brassica carinata BcaC05g26443 ChrC05 + View
Brassica napus A08p27060 A08 - View
Brassica napus A09p39560 A09 - View
Brassica napus C03p72840 C03 + View
Brassica oleracea BolC5t31221H C5 + View
Brassica oleracea BolC3t19582H C3 + View
Brassica rapa BraA08t34651Z A08 - View
Camellia sinensis var. sinensis CSS0023076 PREDICTED: mediator of RNA polymerase II transcription subunit 25 [Vitis vinifera] Chr10 + View
Cannabis sativa CANSAT64G2157 NC_044379.1 + View
Corylus avellana Haze_17450 Similar to MED25: Mediator of RNA polymerase II transcription subunit 25 (Solanum lycopersicum OX%3D4081) 7 + View
Coffea canephora Cc11_g10490 phytochrome and flowering time regulatory protein (PFT1) chr11 - View
Citrus clementina Ciclev10030710m.g scaffold_4 - View
Cardamine hirsuta CARHR025920 Mediator of RNA polymerase II transcription subunit 25 Chr1 + View
Carya illinoinensis CiPaw.16G003700 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) Chr16 + View
Cucumis melo MELO3C012221.2 Mediator of RNA polymerase II transcription subunit 25 chr10 - View
Corchorus olitorius COL.COLO4_07881 Mediator complex%2C subunit Med25%2C von Willebrand factor type A AWUE01013495.1 + View
Carica papaya Cpa.g.sc1.211 supercontig_1 - View
Capsella rubella Carub.0001s2494 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) scaffold_1 + View
Cucumis sativus L. CsaV3_5G034050 mediator of RNA polymerase II transcription subunit 25 chr5 + View
Daucus carota DCAR_026720 hypothetical protein DCARv2_Chr8 - View
Davidia involucrata Dinv21122 GWHABJS00000018 + View
Davidia involucrata Dinv04490 GWHABJS00000008 - View
Durio zibethinus Duzib251G0734 NW_019167971.1 - View
Erigeron canadensis ECA246G2084 Conyza_canadensis_scaffold:8 + View
Erigeron canadensis ECA234G4415 Conyza_canadensis_scaffold:4 + View
Erythranthe guttata Migut.E00313 scaffold_5 + View
Eutrema salsugineum Thhalv10006778m.g K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) scaffold_5 - View
Fragaria x ananassa FAN12G2547 PTHR12433//PTHR12433:SF11 - PROSTATE TUMOR OVEREXPRESSED GENE 1 PTOV1 // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 Fvb4-3 + View
Fragaria x ananassa FAN22G1846 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) Fvb4-1 - View
Fragaria vesca FvH4_4g27961 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) Fvb4 - View
Gossypium hirsutum Gohir.D13G070100 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) D13 + View
Gossypium hirsutum Gohir.A13G053428 PTHR12433//PTHR12433:SF11 - PROSTATE TUMOR OVEREXPRESSED GENE 1 PTOV1 // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 A13 + View
Gossypium hirsutum Gohir.D02G115800 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) D02 - View
Gossypium hirsutum Gohir.A03G097900 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) A03 - View
Glycine max Glyma.01G086201 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) Gm01 - View
Glycine max Glyma.02G098300 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) Gm02 - View
Gossypium raimondii Gorai.005G138200 Chr05 + View
Gossypium raimondii Gorai.013G080300 Chr13 + View
Lupinus albus Lalb_Chr10g0099841 PTHR12433//PTHR12433:SF11 - PROSTATE TUMOR OVEREXPRESSED GENE 1 PTOV1 // MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 Lalb_Chr10 + View
Lupinus albus Lalb_Chr17g0341951 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) Lalb_Chr17 + View
Lotus japonicus Lj2g0026621 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) chr2 + View
Lonicera japonica Lj6A762T42 GWHAAZE00000006 - View
Lonicera japonica Lj9A429G49 GWHAAZE00000009 - View
Lactuca sativa Lsat_1_v5_gn_4_19001 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) Lsat_1_v8_lg_4 - View
Lactuca sativa Lsat_1_v5_gn_3_60001 Lsat_1_v8_lg_3 - View
Malus domestica MD16G1046800 phytochrome and flowering time regulatory protein (PFT1) Chr16 - View
Manihot esculenta Manes.14G098600 Chromosome14 + View
Nelumbo nucifera Nn4g23754 chr4 + View
Nicotiana tabacum Nitab4.5_0000672g0110 Mediator complex, subunit Med25, von Willebrand factor type A Nitab4.5_0000672 + View
Olea europaea Oeu041887.1 scaffold393 + View
Prunus persica Prupe.1G306600 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) Pp01 + View
Papaver somniferum PSO017G3087 NC_039362.1 - View
Papaver somniferum PSO478G2088 NC_039361.1 - View
Populus trichocarpa Potri.010G128600 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) Chr10 - View
Populus trichocarpa Potri.008G117700 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) Chr08 + View
Phaseolus vulgaris Phvul.003G028300 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) Chr03 + View
Quercus lobata QL01p044747 1 - View
Rosa chinensis RcHm_v2.0_Chr4g0435671 RcHm_v2.0_Chr4 - View
Rhododendron simsii Rhsim09G0111200 chr09 - View
Salix brachista Sabra10G0097800 GWHAAZH00000010 - View
Salix brachista Sabra08G0089300 GWHAAZH00000008 + View
Simmondsia chinensis Sc04g0003680 GWHAASQ00000004 + View
Sechium edule Sed0009737 LG07 + View
Solanum lycopersicum Solyc05g009710.4 Mediator of RNA polymerase II transcription subunit 25 (AHRD V3.3 *-* A0A2G3CLS9_CAPCH) SL4.0ch05 - View
Schrenkiella parvula Sp1g22670 K15168 - mediator of RNA polymerase II transcription subunit 25 (MED25) ch1-1 + View
Solanum pennellii Sopen05g005530 Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. Also shown to be a Mediator subunit regulating jasmonate-dependent defense. | PHYTOCHROME AND FLOWERING TIME 1 (PFT1) | FUNCTIONS IN: transcription coactivator activity | INVOLVED IN: in 8 processes | LOCATED IN: mediator complex, nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med25, von Willebrand factor type A Spenn-ch05 - View
Solanum tuberosum PGSC0003DMG401000817 Phytochrome and flowering time 1 protein ST4.03ch05 + View
Selenicereus undatus Hund25094 Scaffold_3410 - View
Trochodendron aralioides TAR622G0040 group8 - View
Theobroma cacao Thecc.02G359700 Phytochrome and flowering time regulatory protein Chromosome_2 - View
Tarenaya hassleriana THA.LOC104821957 mediator of RNA polymerase II transcription subunit 25 isoform X1 NW_010966617.1 - View
Tripterygium wilfordii TWI31G1103 NC_052233.1 - View
Tripterygium wilfordii TWI79G1384 NC_052238.1 - View
Vaccinium macrocarpon vmacro10537 Similar to MED25: Mediator of RNA polymerase II transcription subunit 25 (Solanum lycopersicum OX%3D4081) chr8_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1215G2122 CM024074.1 - View
Vitis vinifera GSVIVG01008248001 chr17 - View
Vitis vinifera GSVIVG01011939001 chr1 + View