Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold43G16475 scaffold43 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr5.311 chr5 - View
Actinidia chinensis Actinidia33464 Lachesis_group16 - View
Actinidia chinensis Actinidia12689 Lachesis_group23 + View
Actinidia chinensis Actinidia31411 Lachesis_group0 + View
Arabidopsis lyrata AL5G43140 scaffold_5 - View
Avicennia marina MSTRG.17194 ScioBoG_19743_HRSCAF_19834 - View
Avicennia marina MSTRG.28187 ScioBoG_94932_HRSCAF_95134 - View
Amaranthus hybridus Ah.05g174150 AmaHy_arrow1_Scaffold_5 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.FA29PG PTHR11599//PTHR11599:SF59//PTHR31500//PTHR31500:SF15 - PROTEASOME SUBUNIT ALPHA/BETA // PROTEASOME SUBUNIT BETA TYPE-1 // FAMILY NOT NAMED // AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN arahy.Tifrunner.gnm1.Arahy.12 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.GL64VW PTHR11599//PTHR11599:SF59 - PROTEASOME SUBUNIT ALPHA/BETA // PROTEASOME SUBUNIT BETA TYPE-1 arahy.Tifrunner.gnm1.Arahy.02 - View
Arabidopsis thaliana AT3G60820 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Encodes 20S proteasome beta subunit PBF1 (PBF1). PBF1%3B FUNCTIONS IN: peptidase activity%2C endopeptidase activity%2C threonine-type endopeptidase activity%3B INVOLVED IN: defense response to fungus%2C incompatible interaction%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome core complex%2C proteasome complex%2C plasma membrane%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteasome%2C beta-type subunit%2C conserved site (InterPro:IPR016050)%2C Proteasome%2C subunit alpha/beta (InterPro:IPR001353)%3B BEST Arabidopsis thaliana protein match is: proteasome beta subunit C1 (TAIR:AT1G21720.1)%3B Has 4354 Blast hits to 4354 proteins in 444 species: Archae - 499%3B Bacteria - 50%3B Metazoa - 1642%3B Fungi - 1076%3B Plants - 489%3B Viruses - 0%3B Other Eukaryotes - 598 (source: NCBI BLink). PBF1%3B FUNCTIONS IN: peptidase activity%2C endopeptidase activity%2C threonine-type endopeptidase activity%3B INVOLVED IN: defense response to fungus%2C incompatible interaction%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: proteasome core complex%2C proteasome complex%2C plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Proteasome%2C beta-type subunit%2C conserved site (InterPro:IPR016050)%2C Proteasome%2C subunit alpha/beta (InterPro:IPR001353)%3B BEST Arabidopsis thaliana protein match is: proteasome beta subunit C1 (TAIR:AT1G21720.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaC02g10187 ChrC02 - View
Brassica napus C08p35780 C08 - View
Brassica napus C06p26930 C06 - View
Brassica napus A04p01400 A04 + View
Brassica napus A09p53080 A09 - View
Brassica rapa BraA09t40734Z A09 - View
Beta vulgaris EL10Ac1g00896 K02732 - 20S proteasome subunit beta 6 (PSMB1) Chr1_EL10_PGA_scaffold3 + View
Camellia sinensis var. sinensis CSS0005196 PREDICTED: proteasome subunit beta type-1 [Sesamum indicum] Chr6 + View
Camellia sinensis var. sinensis CSS0021281 PREDICTED: proteasome subunit beta type-1-like [Nicotiana tomentosiformis] Chr3 - View
Cannabis sativa CANSAT56G3211 NC_044371.1 - View
Corylus avellana Haze_16817 Similar to PBF1: Proteasome subunit beta type-1 (Petunia hybrida OX%3D4102) 11 - View
Coffea canephora Cc02_g36680 Proteasome subunit beta type-1 chr2 + View
Coffea canephora Cc02_g23770 Putative Proteasome subunit beta type-1 chr2 + View
Citrus clementina Ciclev10022119m.g scaffold_3 + View
Ceratophyllum demersum CDE04G3268 2 - View
Carpinus fangiana Cfa001719 Cfa01 + View
Cardamine hirsuta CARHR171210 Proteasome subunit beta type Chr5 - View
Carya illinoinensis CiPaw.02G167600 K02732 - 20S proteasome subunit beta 6 (PSMB1) Chr02 + View
Carya illinoinensis CiPaw.01G261800 K02732 - 20S proteasome subunit beta 6 (PSMB1) Chr01 + View
Citrullus lanatus ClCG05G002210 Proteasome subunit beta type CG_Chr05 + View
Corchorus olitorius COL.COLO4_12550 Proteasome%2C subunit alpha/beta AWUE01014929.1 - View
Chenopodium quinoa AUR62013630 PBF1: Proteasome subunit beta type-1 C_Quinoa_Scaffold_1412 - View
Chenopodium quinoa AUR62004218 PBF1: Proteasome subunit beta type-1 C_Quinoa_Scaffold_4250 + View
Capsella rubella Carub.0005s2757 K02732 - 20S proteasome subunit beta 6 (PSMB1) scaffold_5 - View
Daucus carota DCAR_006866 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv43712 GWHABJS00000016 - View
Davidia involucrata Dinv32379 GWHABJS00000020 - View
Durio zibethinus Duzib138G1909 NW_019167893.1 - View
Durio zibethinus Duzib133G0737 NW_019167938.1 - View
Eucalyptus grandis Eucgr.E01416 Chr05 + View
Erythranthe guttata Migut.B01636 scaffold_2 - View
Eutrema salsugineum Thhalv10006409m.g K02732 - 20S proteasome subunit beta 6 (PSMB1) scaffold_19 + View
Fragaria x ananassa FAN03G3077 K02732 - 20S proteasome subunit beta 6 (PSMB1) Fvb7-3 + View
Fragaria x ananassa FAN10G2702 K02732 - 20S proteasome subunit beta 6 (PSMB1) Fvb7-1 - View
Fragaria x ananassa FAN01G2692 K02732 - 20S proteasome subunit beta 6 (PSMB1) Fvb7-4 + View
Fragaria x ananassa FAN06G2068 PTHR11599:SF59 - PROTEASOME SUBUNIT BETA TYPE-1 Fvb7-2 - View
Fragaria vesca FvH4_7g11920 K02732 - 20S proteasome subunit beta 6 (PSMB1) Fvb7 - View
Gossypium hirsutum Gohir.A07G145500 K02732 - 20S proteasome subunit beta 6 (PSMB1) A07 + View
Gossypium hirsutum Gohir.D07G151700 K02732 - 20S proteasome subunit beta 6 (PSMB1) D07 + View
Gossypium raimondii Gorai.001G173600 Chr01 + View
Helianthus annuus HanXRQChr03g0093901 Probable proteasome subunit beta type-1 HanXRQChr03 + View
Hydrangea macrophylla Hma1.2p1_0033F.1_g021050 Hma1.2p1_0033F.1 + View
Lupinus albus Lalb_Chr07g0189781 PTHR11599:SF59 - PROTEASOME SUBUNIT BETA TYPE-1 Lalb_Chr07 + View
Lonicera japonica Lj7A528T56 GWHAAZE00000007 + View
Lactuca sativa Lsat_1_v5_gn_3_132000 Lsat_1_v8_lg_3 - View
Lactuca sativa Lsat_1_v5_gn_4_40961 K02732 - 20S proteasome subunit beta 6 (PSMB1) Lsat_1_v8_lg_4 + View
Magnolia biondii MBI04_g35277_MAGBIO AED:0.15 Chr04 - View
Magnolia biondii MBI12_g10757_MAGBIO AED:0.51 Chr12 - View
Malus domestica MD02G1204000 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Chr02 + View
Malus domestica MD07G1122000 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Chr07 - View
Manihot esculenta Manes.05G045100 Chromosome05 + View
Manihot esculenta Manes.01G265800 Chromosome01 + View
Prunus persica Prupe.2G145800 K02732 - 20S proteasome subunit beta 6 (PSMB1) Pp02 - View
Populus trichocarpa Potri.014G069800 K02732 - 20S proteasome subunit beta 6 (PSMB1) Chr14 - View
Populus trichocarpa Potri.002G148300 K02732 - 20S proteasome subunit beta 6 (PSMB1) Chr02 - View
Quercus lobata QL08p052463 8 + View
Rhododendron simsii Rhsim07G0027400 chr07 + View
Salvia bowleyana SalBow5G5391 GWHASIU00000003 - View
Salvia bowleyana SalBow5G2585 GWHASIU00000003 - View
Salix brachista Sabra14G0049500 GWHAAZH00000014 - View
Simmondsia chinensis Sc02g0002570 GWHAASQ00000002 + View
Simmondsia chinensis Sc23g0003550 GWHAASQ00000023 + View
Schrenkiella parvula Sp5g02430 K02732 - 20S proteasome subunit beta 6 (PSMB1) ch5-1 + View
Selenicereus undatus Hund17019 Scaffold_33675 + View
Trochodendron aralioides TAR636G1572 group1 + View
Theobroma cacao Thecc.01G376000 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Chromosome_1 + View
Tarenaya hassleriana THA.LOC104817248 proteasome subunit beta type-1 NW_010965946.1 - View
Tripterygium wilfordii TWI23G0395 NC_052239.1 - View
Tripterygium wilfordii TWI59G1020 NC_052248.1 - View
Vaccinium macrocarpon vmacro13398 Similar to PBF1: Proteasome subunit beta type-1 (Petunia hybrida OX%3D4102) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro21007 Similar to PBF1: Proteasome subunit beta type-1 (Petunia hybrida OX%3D4102) chr10_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01027613001 chr15 + View