Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
RcHm_v2.0_Chr1g0352711 RcHm_v2.0_Chr1 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G640 LG-2 + View
Acer truncatum Atru.chr5.423 chr5 + View
Acer truncatum Atru.chr9.1559 chr9 + View
Actinidia chinensis Actinidia05221 Lachesis_group20 - View
Actinidia chinensis Actinidia27401 Lachesis_group14 + View
Arabidopsis lyrata AL2G12340 scaffold_2 - View
Arabidopsis lyrata AL1G24350 scaffold_1 + View
Arabidopsis lyrata AL6G46280 scaffold_6 - View
Amaranthus hybridus Ah.12g057530 AmaHy_arrow1_Scaffold_12 - View
Aquilegia oxysepala Aqoxy7G00416 CHR07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.N2BQXL arahy.Tifrunner.gnm1.Arahy.05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.J1PMCL PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.15 - View
Arabidopsis thaliana AT4G11680 Zinc finger, C3HC4 type (RING finger) family protein Zinc finger%2C C3HC4 type (RING finger) family protein%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: Zinc finger%2C C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr4 - View
Arabidopsis thaliana AT1G63170 Zinc finger, C3HC4 type (RING finger) family protein Zinc finger%2C C3HC4 type (RING finger) family protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: Zinc finger%2C C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1)%3B Has 9547 Blast hits to 9526 proteins in 279 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2543%3B Fungi - 730%3B Plants - 5047%3B Viruses - 25%3B Other Eukaryotes - 1196 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G12760 Zinc finger, C3HC4 type (RING finger) family protein Zinc finger%2C C3HC4 type (RING finger) family protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C zinc ion binding%3B LOCATED IN: chloroplast%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: Zinc finger%2C C3HC4 type (RING finger) family protein (TAIR:AT1G63170.1)%3B Has 9873 Blast hits to 9851 proteins in 276 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2638%3B Fungi - 764%3B Plants - 5094%3B Viruses - 23%3B Other Eukaryotes - 1348 (source: NCBI BLink). Chr1 + View
Amborella trichopoda ATR0757G215 AmTr_v1.0_scaffold00069 + View
Brassica carinata BcaC05g25116 ChrC05 - View
Brassica carinata BcaC06g31940 ChrC06 + View
Brassica carinata BcaC04g22715 ChrC04 - View
Brassica carinata BcaC05g25159 ChrC05 - View
Brassica carinata BcaB01g01673 ChrB01 - View
Brassica napus A09p27460 A09 + View
Brassica napus A06p08930 A06 - View
Brassica napus C05p10540 C05 - View
Brassica napus A09p13500 A09 + View
Brassica napus C09p16000 C09 + View
Brassica oleracea BolC9t54515H C9 + View
Brassica oleracea BolC5t29799H C5 - View
Brassica rapa BraA09t37001Z A09 + View
Brassica rapa BraA06t24085Z A06 - View
Beta vulgaris EL10Ac5g12745 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr5_EL10_PGA_scaffold2 + View
Camellia sinensis var. sinensis CSS0013709 PREDICTED: E3 ubiquitin-protein ligase At1g12760 isoform X2 [Nelumbo nucifera] Chr12 - View
Camellia sinensis var. sinensis CSS0032938 PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Nicotiana sylvestris] Chr6 + View
Cannabis sativa CANSAT21G2218 NC_044374.1 - View
Cannabis sativa CANSAT56G1484 NC_044371.1 - View
Cicer arietinum L. Ca_06655_v3 Ca_LG3_v3 - View
Corylus avellana Haze_08932 Similar to At1g12760: E3 ubiquitin-protein ligase At1g12760 (Arabidopsis thaliana OX%3D3702) 4 - View
Corylus avellana Haze_15207 Similar to At4g11680: E3 ubiquitin-protein ligase At4g11680 (Arabidopsis thaliana OX%3D3702) 11 - View
Coffea canephora Cc02_g37400 E3 ubiquitin-protein ligase At4g11680 chr2 + View
Citrus clementina Ciclev10020664m.g scaffold_3 - View
Citrus clementina Ciclev10020554m.g scaffold_3 + View
Ceratophyllum demersum CDE11G1159 9 + View
Ceratophyllum demersum CDE02G0971 1 - View
Carpinus fangiana Cfa012118 Cfa05 + View
Cardamine hirsuta CARHR013050 Ring finger protein, putative Chr1 + View
Cardamine hirsuta CARHR254690 Ring finger protein, putative Chr8 + View
Cardamine hirsuta CARHR048330 Ring finger protein, putative Chr2 - View
Carya illinoinensis CiPaw.01G055300 PTHR14155//PTHR14155:SF140 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr01 + View
Carya illinoinensis CiPaw.11G139700 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr11 - View
Carya illinoinensis CiPaw.12G097100 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr12 - View
Citrullus lanatus ClCG10G003530 Zinc finger, C3HC4 type (RING finger) family protein LENGTH=381 CG_Chr10 + View
Carica papaya Cpa.g.sc74.57 supercontig_74 + View
Chenopodium quinoa AUR62017278 At1g12760: E3 ubiquitin-protein ligase At1g12760 C_Quinoa_Scaffold_3489 - View
Chenopodium quinoa AUR62010635 At4g11680: E3 ubiquitin-protein ligase At4g11680 C_Quinoa_Scaffold_1280 - View
Capsella rubella Carub.0002s0176 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_2 - View
Capsella rubella Carub.0001s1247 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_1 + View
Cucumis sativus L. CsaV3_3G003540 E3 ubiquitin-protein ligase family chr3 + View
Davidia involucrata Dinv38995 GWHABJS00000003 - View
Davidia involucrata Dinv37675 GWHABJS00000017 - View
Durio zibethinus Duzib068G1043 NW_019167838.1 + View
Durio zibethinus Duzib138G0549 NW_019167893.1 + View
Erigeron canadensis ECA246G0856 Conyza_canadensis_scaffold:8 - View
Erigeron canadensis ECA236G5145 Conyza_canadensis_scaffold:3 + View
Eucalyptus grandis Eucgr.D01910 Chr04 - View
Erythranthe guttata Migut.B01705 scaffold_2 + View
Eutrema salsugineum Thhalv10023515m.g PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_8 - View
Eutrema salsugineum Thhalv10007780m.g PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_5 - View
Fragaria x ananassa FAN13G0495 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb5-2 + View
Fragaria x ananassa FAN04G1162 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb5-4 + View
Fragaria x ananassa FAN06G4661 PTHR14155//PTHR14155:SF114 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb7-2 + View
Fragaria x ananassa FAN18G4567 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb5-1 + View
Fragaria x ananassa FAN06G0163 PTHR14155//PTHR14155:SF114 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb7-2 + View
Fragaria x ananassa FAN10G2118 PTHR14155//PTHR14155:SF140 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb7-1 + View
Fragaria x ananassa FAN03G1533 PTHR14155//PTHR14155:SF140 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb7-3 - View
Fragaria x ananassa FAN08G2990 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb5-3 - View
Fragaria x ananassa FAN01G2515 PTHR14155//PTHR14155:SF140 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb7-4 - View
Fragaria x ananassa FAN10G3330 PTHR14155//PTHR14155:SF114 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb7-1 + View
Fragaria vesca FvH4_7g13390 PTHR14155//PTHR14155:SF114 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb7 + View
Fragaria vesca FvH4_5g01740 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb5 + View
Gossypium hirsutum Gohir.A12G225700 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A12 + View
Gossypium hirsutum Gohir.D08G197800 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED D08 + View
Gossypium hirsutum Gohir.A08G179200 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A08 + View
Gossypium hirsutum Gohir.D12G228200 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED D12 + View
Gossypium hirsutum Gohir.A03G018201 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A03 + View
Gossypium hirsutum Gohir.D03G153400 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED D03 - View
Glycine max Glyma.05G048800 PTHR14155//PTHR14155:SF97 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm05 - View
Glycine max Glyma.17G130700 PTHR14155//PTHR14155:SF97 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm17 - View
Glycine max Glyma.11G026000 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm11 - View
Glycine max Glyma.01G217300 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm01 + View
Gossypium raimondii Gorai.008G244300 Chr08 + View
Gossypium raimondii Gorai.003G161000 Chr03 - View
Gossypium raimondii Gorai.004G208600 Chr04 + View
Lupinus albus Lalb_Chr09g0333231 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lalb_Chr09 - View
Lupinus albus Lalb_Chr05g0225011 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lalb_Chr05 - View
Lupinus albus Lalb_Chr16g0389761 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lalb_Chr16 + View
Lotus japonicus Lj4g0011772 PTHR14155//PTHR14155:SF97 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED chr4 - View
Lotus japonicus Lj2g0004754 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED chr2 - View
Lonicera japonica Lj2C194G5 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_3_5281 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lsat_1_v8_lg_3 + View
Magnolia biondii MBI12_g43908_MAGBIO AED:0.41 Chr12 + View
Magnolia biondii MBI04_g33643_MAGBIO AED:0.18 Chr04 + View
Malus domestica MD04G1064900 Zinc finger Chr04 - View
Manihot esculenta Manes.01G260900 Chromosome01 - View
Manihot esculenta Manes.02G025600 Chromosome02 - View
Medicago truncatula Medtr4g102870 zinc finger, C3HC4 type (RING finger) protein chr4 + View
Medicago truncatula Medtr5g010720 zinc finger, C3HC4 type (RING finger) protein chr5 - View
Nelumbo nucifera Nn6g34209 chr6 - View
Oryza sativa ssp. japonica Os02g0674700 Similar to protein binding protein. chr02 - View
Oryza sativa ssp. japonica Os04g0568900 Similar to RING finger protein 6 (RING-H2 protein). chr04 - View
Petunia axillaris Peaxi162Scf00021g01017 Zinc finger, C3HC4 type (RING finger) family protein Peaxi162Scf00021 + View
Punica granatum PGR031G3582 NC_045127.1 + View
Prunus persica Prupe.2G157200 PTHR14155//PTHR14155:SF140 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Pp02 + View
Prunus persica Prupe.5G092900 Pp05 + View
Papaver somniferum PSO478G1602 NC_039361.1 + View
Papaver somniferum PSO782G4780 NC_039365.1 + View
Populus trichocarpa Potri.014G075000 PTHR14155//PTHR14155:SF140 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr14 - View
Populus trichocarpa Potri.003G123300 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr03 + View
Phaseolus vulgaris Phvul.002G155000 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr02 + View
Phaseolus vulgaris Phvul.003G211600 PTHR14155//PTHR14155:SF97 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr03 - View
Quercus lobata QL12p017564 12 + View
Quercus lobata QL08p050159 8 - View
Rhododendron simsii Rhsim07G0020100 chr07 - View
Rhododendron simsii Rhsim07G0093400 chr07 - View
Salix brachista Sabra03G0087000 GWHAAZH00000003 + View
Simmondsia chinensis Sc07g0009590 GWHAASQ00000007 + View
Schrenkiella parvula Sp1g11320 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED ch1-1 + View
Schrenkiella parvula Sp2g01410 PTHR14155//PTHR14155:SF186 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED ch2-1 - View
Schrenkiella parvula Sp6g05790 PTHR14155//PTHR14155:SF114 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED ch6-1 + View
Solanum pennellii Sopen01g037370 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | LOCATED IN: plasma membrane | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein Spenn-ch01 - View
Solanum tuberosum PGSC0003DMG400027772 Cleavage and polyadenylation specificity factor ST4.03ch01 - View
Selenicereus undatus Hund14732 Scaffold_33677 + View
Selenicereus undatus Hund11516 Scaffold_10417 - View
Trochodendron aralioides TAR629G2473 group0 + View
Trochodendron aralioides TAR375G1029 group15 + View
Trochodendron aralioides TAR636G1629 group1 - View
Theobroma cacao Thecc.03G272800 Zinc finger Chromosome_3 + View
Theobroma cacao Thecc.01G366200 RING/U-box superfamily protein Chromosome_1 - View
Tarenaya hassleriana THA.LOC104809416 E3 ubiquitin-protein ligase At1g12760 NW_010965019.1 - View
Tarenaya hassleriana THA.LOC104814349 E3 ubiquitin-protein ligase At4g11680-like isoform X1 NW_010960187.1 + View
Trifolium pratense TPR.G19229 Tp57577_TGAC_v2_scaf_345 + View
Trifolium pratense TPR.G6678 Tp57577_TGAC_v2_LG2 + View
Tripterygium wilfordii TWI81G0981 NC_052251.1 + View
Tripterygium wilfordii TWI60G1317 NC_052246.1 + View
Vaccinium macrocarpon vmacro13931 Similar to At4g11680: E3 ubiquitin-protein ligase At4g11680 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro13328 Similar to At1g12760: E3 ubiquitin-protein ligase At1g12760 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1215G3360 CM024074.1 - View
Vigna mungo VMungo1215G1790 CM024074.1 + View
Vitis vinifera GSVIVG01019826001 chr2 + View
Zea mays Zm00001eb428770 Zm00001e041437 Putative RING zinc finger domain superfamily protein E3 ubiquitin-protein ligase 10 + View
Zea mays Zm00001eb250410 Zm00001e133559 5 - View
Zea mays Zm00001eb073720 Zm00001e007222 E3 ubiquitin-protein ligase 2 + View