Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Oeu013243.1 chr18 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr3.257 chr3 + View
Actinidia chinensis Actinidia38080 Lachesis_group7 - View
Actinidia chinensis Actinidia01080 Lachesis_group26 - View
Actinidia chinensis Actinidia03808 Lachesis_group8 - View
Arabidopsis lyrata AL5G30200 scaffold_5 + View
Avicennia marina MSTRG.24343 ScioBoG_4088_HRSCAF_4107 + View
Avicennia marina MSTRG.2855 ScioBoG_102835_HRSCAF_103059 + View
Avicennia marina MSTRG.15371 ScioBoG_19538_HRSCAF_19626 + View
Amaranthus hybridus Ah.03g145950 AmaHy_arrow1_Scaffold_3 - View
Aquilegia oxysepala Aqoxy5G01162 CHR05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.MDG0XL K10268//K10273 - F-box and leucine-rich repeat protein 2/20 (FBXL2_20) // F-box and leucine-rich repeat protein 7 (FBXL7) arahy.Tifrunner.gnm1.Arahy.15 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.G6JM3G PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 arahy.Tifrunner.gnm1.Arahy.05 + View
Arabidopsis thaliana AT5G67250 SKP1/ASK1-interacting protein 2 Encodes an SKP1 interacting partner (SKIP2).Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1%2C2%2C and 3. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes. SKP1/ASK1-interacting protein 2 (SKIP2)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%3B BEST Arabidopsis thaliana protein match is: VIER F-box proteine 2 (TAIR:AT3G50080.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT3G50080 VIER F-box protein 2 Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1%2C3%2C and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes. VIER F-box proteine 2 (VFB2)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: N-terminal protein myristoylation%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: cytoplasm%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: F-box domain%2C cyclin-like (InterPro:IPR001810)%2C F-box domain%2C Skp2-like (InterPro:IPR022364)%2C Leucine-rich repeat%2C cysteine-containing subtype (InterPro:IPR006553)%3B BEST Arabidopsis thaliana protein match is: SKP1/ASK1-interacting protein 2 (TAIR:AT5G67250.1)%3B Has 4306 Blast hits to 2435 proteins in 203 species: Archae - 0%3B Bacteria - 23%3B Metazoa - 1627%3B Fungi - 317%3B Plants - 1918%3B Viruses - 0%3B Other Eukaryotes - 421 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC06g34807 ChrC06 - View
Brassica carinata BcaC04g23205 ChrC04 - View
Brassica oleracea BolC9t54003H C9 + View
Brassica rapa BraA07t29394Z A07 + View
Beta vulgaris EL10Ac6g15697 PTHR24006:SF481 - F-BOX PROTEIN SKIP2 Chr6_EL10_PGA_scaffold0 + View
Beta vulgaris EL10As7g23787 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 Scaffold_0007 + View
Camellia sinensis var. sinensis CSS0007231 F-box family protein [Populus trichocarpa] Chr3 - View
Capsicum annuum CAN.G370.17 PGAv.1.6.scaffold370 + View
Corylus avellana Haze_15355 Similar to SKIP2: F-box protein SKIP2 (Arabidopsis thaliana OX%3D3702) 11 + View
Coffea canephora Cc07_g06400 F-box protein SKIP2 chr7 - View
Coffea canephora Cc10_g04870 Putative F-box/LRR-repeat protein 8 chr10 - View
Citrus clementina Ciclev10025355m.g scaffold_7 - View
Ceratophyllum demersum CDE02G3486 1 + View
Carpinus fangiana Cfa004057 Cfa01 - View
Cardamine hirsuta CARHR280380 F-box family protein Chr8 + View
Carya illinoinensis CiPaw.15G052100 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 Chr15 + View
Carya illinoinensis CiPaw.01G013600 PTHR24006:SF481 - F-BOX PROTEIN SKIP2 Chr01 + View
Carya illinoinensis CiPaw.16G037800 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 Chr16 + View
Citrullus lanatus ClCG05G020210 F-box family protein CG_Chr05 - View
Corchorus olitorius COL.COLO4_11476 hypothetical protein AWUE01014705.1 - View
Carica papaya Cpa.g.sc55.97 supercontig_55 + View
Chenopodium quinoa AUR62038247 SKIP2: F-box protein SKIP2 C_Quinoa_Scaffold_3452 - View
Chenopodium quinoa AUR62003931 SKIP2: F-box protein SKIP2 C_Quinoa_Scaffold_2370 - View
Capsella rubella Carub.0008s2726 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 scaffold_8 + View
Capsella rubella Carub.0005s1643 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 scaffold_5 + View
Davidia involucrata Dinv35926 GWHABJS00000002 + View
Davidia involucrata Dinv26860 GWHABJS00000014 - View
Davidia involucrata Dinv39270 GWHABJS00000011 + View
Durio zibethinus Duzib093G0359 NW_019167937.1 + View
Durio zibethinus Duzib147G0099 NW_019168470.1 + View
Durio zibethinus Duzib264G1203 NW_019167960.1 + View
Erigeron canadensis ECA232G2215 Conyza_canadensis_scaffold:2 - View
Erythranthe guttata Migut.H00400 scaffold_8 + View
Eutrema salsugineum Thhalv10011152m.g PTHR24006:SF481 - F-BOX PROTEIN SKIP2 scaffold_16 - View
Fragaria x ananassa FAN19G0648 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 Fvb1-4 - View
Fragaria x ananassa FAN23G0703 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 Fvb1-3 - View
Fragaria x ananassa FAN20G2298 PTHR24006:SF481 - F-BOX PROTEIN SKIP2 Fvb2-3 + View
Fragaria x ananassa FAN28G1952 PTHR24006:SF481 - F-BOX PROTEIN SKIP2 Fvb1-1 + View
Fragaria vesca FvH4_1g16660 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 Fvb1 - View
Fragaria vesca FvH4_2g33740 PTHR24006:SF481 - F-BOX PROTEIN SKIP2 Fvb2 - View
Gossypium hirsutum Gohir.D05G209000 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 D05 - View
Gossypium hirsutum Gohir.D03G025400 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 D03 - View
Gossypium hirsutum Gohir.A02G155300 PF00646//PF12937 - F-box domain (F-box) // F-box-like (F-box-like) A02 + View
Gossypium hirsutum Gohir.D01G109200 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 D01 + View
Gossypium hirsutum Gohir.A05G205700 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 A05 - View
Glycine max Glyma.04G041801 PTHR24006//PTHR24006:SF355 - FAMILY NOT NAMED // UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 Gm04 - View
Glycine max Glyma.11G052600 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 Gm11 + View
Glycine max Glyma.14G086000 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 Gm14 - View
Glycine max Glyma.01G189600 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 Gm01 - View
Glycine max Glyma.17G167800 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 Gm17 + View
Glycine max Glyma.17G238700 K10273 - F-box and leucine-rich repeat protein 7 (FBXL7) Gm17 + View
Gossypium raimondii Gorai.003G027000 Chr03 - View
Gossypium raimondii Gorai.009G215400 Chr09 - View
Hydrangea macrophylla Hma1.2p1_0360F.1_g135910 Hma1.2p1_0360F.1 - View
Lupinus albus Lalb_Chr22g0354901 K10273 - F-box and leucine-rich repeat protein 7 (FBXL7) Lalb_Chr22 - View
Lupinus albus Lalb_Chr05g0213421 PTHR24006:SF481 - F-BOX PROTEIN SKIP2 Lalb_Chr05 - View
Lotus japonicus Lj4g0025766 PTHR24006:SF481 - F-BOX PROTEIN SKIP2 chr4 - View
Lonicera japonica Lj7C76T9 GWHAAZE00000007 - View
Lonicera japonica Lj4C64T9 GWHAAZE00000004 - View
Lactuca sativa Lsat_1_v5_gn_3_90401 Lsat_1_v8_lg_3 + View
Lactuca sativa Lsat_1_v5_gn_1_22481 PTHR24006:SF481 - F-BOX PROTEIN SKIP2 Lsat_1_v8_lg_1 - View
Lactuca sativa Lsat_1_v5_gn_4_127741 PTHR24006:SF481 - F-BOX PROTEIN SKIP2 Lsat_1_v8_lg_4 - View
Malus domestica MD08G1093600 VIER F-box proteine 1 Chr08 + View
Malus domestica MD15G1288000 SKP1/ASK1-interacting protein 2 Chr15 - View
Malus domestica MD15G1077300 VIER F-box proteine 1 Chr15 + View
Malus domestica MD02G1178100 SKP1/ASK1-interacting protein 2 Chr02 - View
Manihot esculenta Manes.13G119200 Chromosome13 + View
Medicago truncatula Medtr1g018790 F-box SKIP2-like protein chr1 + View
Medicago truncatula Medtr4g094932 F-box protein SKIP2 chr4 - View
Nicotiana tabacum Nitab4.5_0001039g0040 Leucine-rich repeat, cysteine-containing subtype, F-box domain Nitab4.5_0001039 - View
Petunia axillaris Peaxi162Scf00549g00043 VIER F-box proteine 1 Peaxi162Scf00549 - View
Punica granatum PGR102G0223 NC_045129.1 + View
Prunus persica Prupe.1G430700 KOG1947 - Leucine rich repeat proteins, some proteins contain F-box Pp01 + View
Pisum sativum Psat4g084560 F-box domain chr4LG4 + View
Papaver somniferum PSO210G0464 NC_039359.1 - View
Papaver somniferum PSO541G5467 NC_039363.1 - View
Papaver somniferum PSO675G2561 NC_039358.1 - View
Papaver somniferum PSO170G2100 NC_039360.1 + View
Populus trichocarpa Potri.005G141800 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 Chr05 - View
Populus trichocarpa Potri.007G048101 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 Chr07 - View
Phaseolus vulgaris Phvul.002G015600 K10273 - F-box and leucine-rich repeat protein 7 (FBXL7) Chr02 + View
Phaseolus vulgaris Phvul.001G024700 K10273 - F-box and leucine-rich repeat protein 7 (FBXL7) Chr01 - View
Rosa chinensis RcHm_v2.0_Chr6g0308811 RcHm_v2.0_Chr6 + View
Rosa chinensis RcHm_v2.0_Chr2g0106581 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim08G0097900 chr08 + View
Salvia bowleyana SalBow6G1506 GWHASIU00000002 - View
Salix brachista Sabra07G0043100 GWHAAZH00000007 - View
Simmondsia chinensis Sc03g0001840 GWHAASQ00000003 - View
Simmondsia chinensis Sc02g0007530 GWHAASQ00000002 - View
Solanum lycopersicum Solyc02g092990.1 F-box protein (AHRD V3.3 *** A0A2G2XGV7_CAPBA) SL4.0ch02 + View
Schrenkiella parvula Sp2g29420 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 ch2-4 + View
Schrenkiella parvula Sp5g12030 PTHR24006//PTHR24006:SF481 - FAMILY NOT NAMED // F-BOX PROTEIN SKIP2 ch5-1 - View
Solanum pennellii Sopen02g037550 Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB2,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes. | VIER F-box proteine 1 (VFB1) | FUNCTIONS IN: ubiquitin-protein ligase activity | INVOLVED IN: N-terminal protein myristoylation | EXPRESSED IN: stomatal complex, sepal, root, leaf | EXPRESSED DURING: seedling growth | CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like , F-box domain, Skp2-like | BEST Arabidopsis thaliana protein match is: VIER F-box proteine 3 Spenn-ch02 + View
Solanum pennellii Sopen04g032090 Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB2,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes. | VIER F-box proteine 1 (VFB1) | FUNCTIONS IN: ubiquitin-protein ligase activity | INVOLVED IN: N-terminal protein myristoylation | EXPRESSED IN: stomatal complex, sepal, root, leaf | EXPRESSED DURING: seedling growth | CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like , F-box domain, Skp2-like | BEST Arabidopsis thaliana protein match is: VIER F-box proteine 3 Spenn-ch04 + View
Solanum tuberosum PGSC0003DMG400041336 F-box family protein ST4.03ch04 + View
Solanum tuberosum PGSC0003DMG400024958 Avr9/Cf-9 rapidly elicited protein 189 ST4.03ch02 + View
Trochodendron aralioides TAR625G0754 group4 - View
Trochodendron aralioides TAR376G0028 group14 + View
Theobroma cacao Thecc.01G062700 SKP1/ASK1-interacting protein 2 Chromosome_1 - View
Tarenaya hassleriana THA.LOC104827405 F-box protein SKIP2 NW_010960188.1 - View
Tripterygium wilfordii TWI36G1279 NC_052237.1 - View
Vigna mungo VMungo1215G2184 CM024074.1 + View
Vigna mungo VMungo1309G0243 CM024072.1 + View