Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Manes.13G043500 Chromosome13 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr5.1940 chr5 - View
Actinidia chinensis Actinidia23745 Lachesis_group9 - View
Actinidia chinensis Actinidia09501 Lachesis_group15 - View
Arabidopsis lyrata AL3G40270 scaffold_3 + View
Avicennia marina MSTRG.21438 ScioBoG_26769_HRSCAF_26899 - View
Aquilegia oxysepala Aqoxy5G00059 CHR05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4K8YXT PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 arahy.Tifrunner.gnm1.Arahy.02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.6PZ1IJ PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 arahy.Tifrunner.gnm1.Arahy.12 - View
Arabidopsis thaliana AT3G24650 AP2/B3-like transcriptional factor family protein Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)]%2C present in many seed-specific promoters%2C and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain%2C a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. ABI3 is a central regulator in ABA signaling and is unstable in vivo. It interacts with and can by polyubiquitinated by AIP2 in vivo. Based on double mutant analyses%2C ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins%2C sensitivity to abscisic acid%2C and expression of the members of the 12S storage protein gene family. In addition%2C both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed. Alternative splicing of ABI3 is developmentally regulated by SUA (AT3G54230). ABA INSENSITIVE 3 (ABI3)%3B CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340)%3B BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G26790.1)%3B Has 4494 Blast hits to 2758 proteins in 300 species: Archae - 0%3B Bacteria - 132%3B Metazoa - 1104%3B Fungi - 405%3B Plants - 1155%3B Viruses - 101%3B Other Eukaryotes - 1597 (source: NCBI BLink). Chr3 + View
Brassica napus A03p43840 A03 + View
Brassica napus C03p54220 C03 + View
Brassica oleracea BolC3t17707H C3 + View
Camellia sinensis var. sinensis CSS0042217 PREDICTED: B3 domain-containing transcription factor ABI3 isoform X2 [Vitis vinifera] Chr11 - View
Capsicum annuum CAN.G771.55 PGAv.1.6.scaffold771 - View
Cannabis sativa CANSAT01G2411 NC_044373.1 - View
Cicer arietinum L. Ca_22686_v3 Ca_LG7_v3 - View
Corylus avellana Haze_24765 Similar to ABI3: B3 domain-containing transcription factor ABI3 (Arabidopsis thaliana OX%3D3702) 8 + View
Coffea canephora Cc01_g17380 Putative B3 domain-containing transcription factor ABI3 chr1 + View
Citrus clementina Ciclev10019039m.g scaffold_3 - View
Carpinus fangiana Cfa002536 Cfa01 + View
Cardamine hirsuta CARHR100970 Transcription factor viviparous 1 Chr3 + View
Carya illinoinensis CiPaw.03G152600 PTHR31140//PTHR31140:SF1 - FAMILY NOT NAMED // B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 Chr03 - View
Carya illinoinensis CiPaw.04G107600 PTHR31140//PTHR31140:SF1 - FAMILY NOT NAMED // B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 Chr04 - View
Citrullus lanatus ClCG09G009230 B3 domain-containing transcription factor ABI3 CG_Chr09 - View
Cucumis melo MELO3C021001.2 B3 domain-containing transcription factor ABI3 chr01 - View
Carica papaya Cpa.g.sc8.187 supercontig_8 - View
Chenopodium quinoa AUR62008894 ABI3: B3 domain-containing transcription factor ABI3 C_Quinoa_Scaffold_1710 + View
Chenopodium quinoa AUR62031814 ABI3: B3 domain-containing transcription factor ABI3 C_Quinoa_Scaffold_1895 - View
Capsella rubella Carub.0003s2505 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 scaffold_3 + View
Cucumis sativus L. CsaV3_7G025720 B3 domain-containing transcription factor ABI3 chr7 + View
Daucus carota DCAR_004706 hypothetical protein DCARv2_Chr1 + View
Daucus carota DCAR_000539 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv19231 GWHABJS00000010 - View
Durio zibethinus Duzib133G0078 NW_019167938.1 + View
Durio zibethinus Duzib138G0071 NW_019167893.1 + View
Erigeron canadensis ECA247G2651 Conyza_canadensis_scaffold:7 - View
Eucalyptus grandis Eucgr.H00815 Chr08 - View
Erythranthe guttata Migut.D00511 scaffold_4 + View
Eutrema salsugineum Thhalv10003110m.g PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 scaffold_4 - View
Fragaria x ananassa FAN15G2279 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 Fvb2-4 - View
Fragaria x ananassa FAN27G2966 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 Fvb2-1 + View
Fragaria x ananassa FAN24G0767 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 Fvb2-2 + View
Fragaria vesca FvH4_2g19630 PTHR31140//PTHR31140:SF1 - FAMILY NOT NAMED // B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 Fvb2 - View
Gossypium hirsutum Gohir.D07G161100 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 D07 + View
Gossypium hirsutum Gohir.A07G154900 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 A07 + View
Glycine max Glyma.08G357600 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 Gm08 - View
Glycine max Glyma.18G176100 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 Gm18 - View
Gossypium raimondii Gorai.001G184300 Chr01 + View
Helianthus annuus HanXRQChr10g0280021 Putative DNA-binding pseudobarrel domain HanXRQChr10 + View
Helianthus annuus HanXRQChr15g0468411 Probable regulatory protein viviparous-1 HanXRQChr15 - View
Lupinus albus Lalb_Chr01g0022481 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 Lalb_Chr01 - View
Lupinus albus Lalb_Chr03g0041991 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 Lalb_Chr03 - View
Lotus japonicus Lj1g0008452 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 chr1 - View
Lonicera japonica Lj1C82T1 GWHAAZE00000001 + View
Lonicera japonica Lj2A1135T40 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_9_12961 Lsat_1_v8_lg_9 + View
Malus domestica MD10G1169900 AP2/B3-like transcriptional factor family protein Chr10 - View
Medicago truncatula Medtr7g059330 B3 domain transcription factor chr7 - View
Nelumbo nucifera Nn1g03112 chr1 - View
Nicotiana tabacum Nitab4.5_0002085g0110 B3 DNA binding domain, DNA-binding pseudobarrel domain Nitab4.5_0002085 - View
Olea europaea Oeu015454.1 chr22 + View
Olea europaea Oeu052113.2 chr4 + View
Petunia axillaris Peaxi162Scf00052g00147 B3 domain-containing transcription factor ABI3 Peaxi162Scf00052 - View
Punica granatum PGR083G0419 NC_045133.1 - View
Prunus persica Prupe.8G207700 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 Pp08 - View
Populus trichocarpa Potri.002G252000 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 Chr02 - View
Phaseolus vulgaris Phvul.008G122100 PTHR31140:SF1 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 Chr08 - View
Quercus lobata QL09p044350 9 - View
Rosa chinensis RcHm_v2.0_Chr6g0285371 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim01G0258000 chr01 - View
Salix brachista Sabra02G0191400 GWHAAZH00000002 - View
Simmondsia chinensis Sc17g0002510 GWHAASQ00000017 + View
Sechium edule Sed0007968 LG07 + View
Sechium edule Sed0013379 LG09 + View
Solanum lycopersicum Solyc06g083590.4 ABI3 SL4.0ch06 - View
Schrenkiella parvula Sp3g22420 PTHR31140//PTHR31140:SF1 - FAMILY NOT NAMED // B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 ch3-2 + View
Solanum pennellii Sopen06g034980 Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif (DNA motif CATGCA(TG)), present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed. Alternative splicing of ABI3 is developmentally regulated by SUA (AT3G54230). | ABA INSENSITIVE 3 (ABI3) | CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 | BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein Spenn-ch06 - View
Solanum tuberosum PGSC0003DMG400020088 VP1-ABI3 ST4.03ch06 - View
Trochodendron aralioides TAR362G0407 group17 - View
Theobroma cacao Thecc.01G230500 ABI3 Chromosome_1 - View
Tripterygium wilfordii TWI14G0074 NC_052249.1 + View
Vigna mungo VMungo1383G1808 CM024070.1 + View
Vitis vinifera GSVIVG01028540001 chr7 + View