Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Glyma.07G249800 PTHR21689//PTHR21689:SF2 - LIN-9 // PROTEIN LIN-9 HOMOLOG Gm07 - View
Glyma.20G234500 PTHR21689:SF3 - PROTEIN ALWAYS EARLY 1-RELATED Gm20 + View
Glyma.19G234700 Gm19 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr4.2797 chr4 + View
Actinidia chinensis Actinidia00042 Lachesis_group10 - View
Actinidia chinensis Actinidia40249 Lachesis_group22 + View
Arabidopsis lyrata AL3G35510 scaffold_3 - View
Avicennia marina MSTRG.21805 ScioBoG_3008_HRSCAF_3015 - View
Avicennia marina MSTRG.3934 ScioBoG_102837_HRSCAF_103074 - View
Amaranthus hybridus Ah.04g153900 Protein ALWAYS EARLY 3 (AtALY3) AmaHy_arrow1_Scaffold_4 - View
Aquilegia oxysepala Aqoxy2G03054 CHR02 + View
Aquilegia oxysepala Aqoxy5G00660 CHR05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.01A8MA PTHR21689:SF3 - PROTEIN ALWAYS EARLY 1-RELATED arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.FE8GQY PTHR21689:SF3 - PROTEIN ALWAYS EARLY 1-RELATED arahy.Tifrunner.gnm1.Arahy.16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.R7AZQJ PTHR21689//PTHR21689:SF2 - LIN-9 // PROTEIN LIN-9 HOMOLOG arahy.Tifrunner.gnm1.Arahy.01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.5EJH8A PTHR21689//PTHR21689:SF2 - LIN-9 // PROTEIN LIN-9 HOMOLOG arahy.Tifrunner.gnm1.Arahy.11 + View
Arabidopsis thaliana AT3G21430 DNA binding protein ALWAYS EARLY 3 (ALY3)%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: SANT%2C DNA-binding (InterPro:IPR001005)%2C Homeodomain-like (InterPro:IPR009057)%2C Myb%2C DNA-binding (InterPro:IPR014778)%2C DIRP (InterPro:IPR010561)%3B BEST Arabidopsis thaliana protein match is: DIRP %3BMyb-like DNA-binding domain (TAIR:AT3G05380.4)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr3 - View
Brassica oleracea BolC5t34844H C5 - View
Brassica rapa BraA05t23027Z A05 + View
Beta vulgaris EL10Ac3g06584 PTHR21689:SF2 - PROTEIN LIN-9 HOMOLOG Chr3_EL10_PGA_scaffold7 + View
Camellia sinensis var. sinensis CSS0013812 unnamed protein product [Vitis vinifera] Chr3 - View
Camellia sinensis var. sinensis CSS0007405 PREDICTED: protein ALWAYS EARLY 3 [Vitis vinifera] Chr9 + View
Camellia sinensis var. sinensis CSS0031220 unnamed protein product [Vitis vinifera] Chr5 + View
Cannabis sativa CANSAT78G2055 NC_044376.1 - View
Cicer arietinum L. Ca_21534_v3 Ca_LG7_v3 - View
Corylus avellana Haze_01238 Similar to ALY3: Protein ALWAYS EARLY 3 (Arabidopsis thaliana OX%3D3702) 1 - View
Corylus avellana Haze_04176 Similar to ALY2: Protein ALWAYS EARLY 2 (Arabidopsis thaliana OX%3D3702) 2 - View
Citrus clementina Ciclev10006326m.g scaffold_9 - View
Citrus clementina Ciclev10000065m.g scaffold_5 + View
Carpinus fangiana Cfa006601 Cfa02 + View
Carya illinoinensis CiPaw.01G150700 PTHR21689:SF2 - PROTEIN LIN-9 HOMOLOG Chr01 - View
Carya illinoinensis CiPaw.07G018900 PTHR21689//PTHR21689:SF3 - LIN-9 // PROTEIN ALWAYS EARLY 1-RELATED Chr07 + View
Citrullus lanatus ClCG05G005970 Always early, putative CG_Chr05 + View
Cucumis melo MELO3C031729.2 Protein ALWAYS EARLY 3 chr06 + View
Corchorus olitorius COL.COLO4_13902 hypothetical protein AWUE01015334.1 - View
Carica papaya Cpa.g.sc48.70 supercontig_48 + View
Carica papaya Cpa.g.sc16.151 supercontig_16 + View
Chenopodium quinoa AUR62005159 ALY3: Protein ALWAYS EARLY 3 C_Quinoa_Scaffold_3820 - View
Capsella rubella Carub.0003s2146 scaffold_3 - View
Capsella rubella Carub.0006s2498 PTHR21689:SF3 - PROTEIN ALWAYS EARLY 1-RELATED scaffold_6 - View
Cucumis sativus L. CsaV3_3G014420 protein ALWAYS EARLY 3 isoform X1 chr3 + View
Daucus carota DCAR_027087 hypothetical protein DCARv2_Chr8 + View
Daucus carota DCAR_024557 hypothetical protein DCARv2_Chr7 + View
Davidia involucrata Dinv38307 GWHABJS00000016 + View
Davidia involucrata Dinv30775 GWHABJS00000002 + View
Davidia involucrata Dinv44401 GWHABJS00000014 + View
Durio zibethinus Duzib052G0562 NW_019167849.1 + View
Durio zibethinus Duzib177G0446 NW_019168004.1 + View
Durio zibethinus Duzib212G0110 NW_019168026.1 - View
Erythranthe guttata Migut.G00183 scaffold_7 - View
Erythranthe guttata Migut.N00106 scaffold_14 - View
Eutrema salsugineum Thhalv10003596m.g PTHR21689:SF3 - PROTEIN ALWAYS EARLY 1-RELATED scaffold_6 - View
Fragaria x ananassa FAN05G4497 PTHR21689:SF3 - PROTEIN ALWAYS EARLY 1-RELATED Fvb6-3 - View
Fragaria x ananassa FAN12G2891 PTHR21689:SF2 - PROTEIN LIN-9 HOMOLOG Fvb4-3 + View
Fragaria x ananassa FAN22G0525 PTHR21689//PTHR21689:SF2 - LIN-9 // PROTEIN LIN-9 HOMOLOG Fvb4-1 + View
Fragaria x ananassa FAN07G1913 PTHR21689:SF2 - PROTEIN LIN-9 HOMOLOG Fvb4-4 - View
Fragaria x ananassa FAN12G3732 PTHR21689//PTHR21689:SF2 - LIN-9 // PROTEIN LIN-9 HOMOLOG Fvb4-3 - View
Fragaria x ananassa FAN14G1216 PTHR21689//PTHR21689:SF3 - LIN-9 // PROTEIN ALWAYS EARLY 1-RELATED Fvb6-1 - View
Fragaria x ananassa FAN17G1019 PTHR21689//PTHR21689:SF2 - LIN-9 // PROTEIN LIN-9 HOMOLOG Fvb4-2 - View
Fragaria vesca FvH4_4g17660 PTHR21689:SF2 - PROTEIN LIN-9 HOMOLOG Fvb4 + View
Gossypium hirsutum Gohir.D02G053000 PTHR21689//PTHR21689:SF2 - LIN-9 // PROTEIN LIN-9 HOMOLOG D02 + View
Gossypium hirsutum Gohir.A02G047900 PTHR21689//PTHR21689:SF2 - LIN-9 // PROTEIN LIN-9 HOMOLOG A02 + View
Gossypium raimondii Gorai.005G058900 Chr05 + View
Hydrangea macrophylla Hma1.2p1_0698F.1_g205350 Hma1.2p1_0698F.1 - View
Lupinus albus Lalb_Chr07g0177631 PTHR21689//PTHR21689:SF2 - LIN-9 // PROTEIN LIN-9 HOMOLOG Lalb_Chr07 + View
Lupinus albus Lalb_Chr02g0148211 PTHR21689:SF3 - PROTEIN ALWAYS EARLY 1-RELATED Lalb_Chr02 - View
Lotus japonicus Lj4g0021619 PTHR21689//PTHR21689:SF2 - LIN-9 // PROTEIN LIN-9 HOMOLOG chr4 + View
Lotus japonicus Lj1g0025505 PTHR21689//PTHR21689:SF3 - LIN-9 // PROTEIN ALWAYS EARLY 1-RELATED chr1 + View
Lonicera japonica Lj6A672G23 GWHAAZE00000006 + View
Malus domestica MD16G1172500 DNA binding Chr16 - View
Malus domestica MD12G1217500 DNA binding Chr12 - View
Malus domestica MD13G1170900 DNA binding Chr13 - View
Manihot esculenta Manes.09G168000 Chromosome09 + View
Manihot esculenta Manes.15G014400 Chromosome15 - View
Medicago truncatula Medtr1g083040 always EARLY-like protein chr1 + View
Medicago truncatula Medtr4g119390 always EARLY-like protein chr4 + View
Nelumbo nucifera Nn4g25956 chr4 + View
Nelumbo nucifera Nn3g21366 chr3 - View
Olea europaea Oeu029259.3 scaffold244 - View
Punica granatum PGR004G1216 NC_045131.1 - View
Punica granatum PGR031G3250 NC_045127.1 - View
Prunus persica Prupe.1G139300 Pp01 - View
Pisum sativum Psat4g027800 DIRP chr4LG4 + View
Papaver somniferum PSO210G6282 NC_039359.1 + View
Papaver somniferum PSO170G4751 NC_039360.1 + View
Populus trichocarpa Potri.010G023201 PTHR21689//PTHR21689:SF2 - LIN-9 // PROTEIN LIN-9 HOMOLOG Chr10 - View
Populus trichocarpa Potri.008G216600 PTHR21689//PTHR21689:SF2 - LIN-9 // PROTEIN LIN-9 HOMOLOG Chr08 + View
Populus trichocarpa Potri.005G029000 PTHR21689:SF3 - PROTEIN ALWAYS EARLY 1-RELATED Chr05 - View
Populus trichocarpa Potri.013G020500 PTHR21689:SF3 - PROTEIN ALWAYS EARLY 1-RELATED Chr13 - View
Phaseolus vulgaris Phvul.003G103001 PTHR21689:SF2 - PROTEIN LIN-9 HOMOLOG Chr03 - View
Quercus lobata QL06p008270 6 + View
Rosa chinensis RcHm_v2.0_Chr4g0421571 RcHm_v2.0_Chr4 + View
Rhododendron simsii Rhsim04G0219400 chr04 + View
Striga asiatica SGA_v2.0_scaffold86G26906 scaffold86 - View
Striga asiatica SGA_v2.0_scaffold175G39296 scaffold175 - View
Salvia bowleyana SalBow2G2421 GWHASIU00000007 + View
Salvia bowleyana SalBow5G3642 GWHASIU00000003 - View
Salix brachista Sabra08G0154900 GWHAAZH00000008 + View
Salix brachista Sabra05G0033800 GWHAAZH00000005 - View
Salix brachista Sabra10G0015400 GWHAAZH00000010 + View
Salix brachista Sabra13G0023000 GWHAAZH00000013 - View
Simmondsia chinensis Sc09g0003120 GWHAASQ00000009 - View
Sechium edule Sed0011069 LG02 - View
Solanum lycopersicum Solyc01g067560.3 Protein always early 3 (AHRD V3.3 *** A0A1J6HVB4_NICAT) SL4.0ch01 - View
Schrenkiella parvula Sp3g19450 PTHR21689:SF2 - PROTEIN LIN-9 HOMOLOG ch3-1 - View
Schrenkiella parvula Sp2g20770 PTHR21689//PTHR21689:SF3 - LIN-9 // PROTEIN ALWAYS EARLY 1-RELATED ch2-4 + View
Selenicereus undatus Hund07078 Scaffold_33676 + View
Selenicereus undatus Hund20572 Scaffold_33673 - View
Trochodendron aralioides TAR365G0589 group16 + View
Trochodendron aralioides TAR633G0752 group2 + View
Theobroma cacao Thecc.04G280900 Always early Chromosome_4 + View
Tarenaya hassleriana THA.LOC104802553 protein ALWAYS EARLY 3-like isoform X1 NW_010970490.1 - View
Tripterygium wilfordii TWI73G0495 NC_052232.1 - View
Tripterygium wilfordii TWI12G0026 NC_052243.1 + View
Tripterygium wilfordii TWI53G1978 NC_052244.1 + View
Utricularia gibba unitig_37.g12389 unitig_37 + View
Vaccinium macrocarpon vmacro08123 Similar to ALY3: Protein ALWAYS EARLY 3 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G2815 CM024074.1 - View
Vitis vinifera GSVIVG01017770001 chr5 - View