Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0035186 hypothetical protein CICLE_v10002804mg [Citrus clementina] Chr3 + View
CSS0046944 PREDICTED: histone H2AX [Malus domestica] Chr11 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G12100 LG-2 + View
Actinidia chinensis Actinidia30899 Lachesis_group0 + View
Actinidia chinensis Actinidia05738 Lachesis_group20 + View
Arabidopsis lyrata AL1G65100 scaffold_1 - View
Amaranthus hybridus Ah.04g159920 Probable histone H2AXb (HTA3) AmaHy_arrow1_Scaffold_4 + View
Aquilegia oxysepala Aqoxy5G00592 CHR05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZG8UEM K11251 - histone H2A (H2A) arahy.Tifrunner.gnm1.Arahy.06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.M3U15Z K11251 - histone H2A (H2A) arahy.Tifrunner.gnm1.Arahy.16 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.M37KN5 K11251 - histone H2A (H2A) arahy.Tifrunner.gnm1.Arahy.06 - View
Arabidopsis thaliana AT1G54690 gamma histone variant H2AX Encodes HTA3%2C a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation%2C rapid accumulation of phosphorylated H2AX (%26#947%3B-H2AX) occurs around the break site. %01H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse %26#947%3B-H2AX foci throughout the chromatin. However%2C their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S%2C no %26#947%3B-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear%2C there is an equally swift accumulation of %26#947%3B-H2AX to a maximum of %3E50 diffuse foci. The level of %26#947%3BH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 10%E2%80%9320 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin. gamma histone variant H2AX (GAMMA-H2AX)%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: nucleolus%2C nucleus%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G08880.1)%3B Has 3932 Blast hits to 3927 proteins in 364 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2549%3B Fungi - 335%3B Plants - 612%3B Viruses - 4%3B Other Eukaryotes - 432 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC03g17795 ChrC03 - View
Cicer arietinum L. Ca_09383_v3 Ca_LG3_v3 + View
Corylus avellana Haze_04265 Similar to At1g54690: Probable histone H2AXb (Arabidopsis thaliana OX%3D3702) 2 + View
Coffea canephora Cc01_g20020 Histone H2AX chr1 + View
Citrus clementina Ciclev10002804m.g scaffold_5 + View
Ceratophyllum demersum CDE05G0471 3 - View
Carpinus fangiana Cfa006521 Cfa02 - View
Cardamine hirsuta CARHR055830 Histone H2A Chr2 - View
Carya illinoinensis CiPaw.07G012500 K11251 - histone H2A (H2A) Chr07 - View
Carya illinoinensis CiPaw.08G168300 K11251 - histone H2A (H2A) Chr08 + View
Citrullus lanatus ClCG03G016620 Histone H2A CG_Chr03 + View
Cucumis melo MELO3C015363.2 Histone H2A chr02 - View
Corchorus olitorius COL.COLO4_13562 Histone H2A AWUE01015201.1 + View
Carica papaya Cpa.g.sc84.117 supercontig_84 - View
Chenopodium quinoa AUR62000903 HIS2A: Histone H2AX C_Quinoa_Scaffold_2088 + View
Chenopodium quinoa AUR62005072 At1g54690: Probable histone H2AXb C_Quinoa_Scaffold_3820 - View
Capsella rubella Carub.0002s0891 K11251 - histone H2A (H2A) scaffold_2 + View
Cucumis sativus L. CsaV3_1G039370 Histone H2A chr1 - View
Daucus carota DCAR_003306 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv11282 GWHABJS00000007 - View
Davidia involucrata Dinv40232 GWHABJS00000005 + View
Durio zibethinus Duzib128G0269 NW_019168481.1 + View
Durio zibethinus Duzib106G0175 NW_019168492.1 + View
Durio zibethinus Duzib177G0421 NW_019168004.1 - View
Eucalyptus grandis Eucgr.B02031 Chr02 + View
Eucalyptus grandis Eucgr.H04433 Chr08 - View
Fragaria x ananassa FAN09G4900 K11251 - histone H2A (H2A) Fvb6-2 + View
Fragaria x ananassa FAN15G2878 K11251 - histone H2A (H2A) Fvb2-4 + View
Fragaria x ananassa FAN02G2630 PF00125 - Core histone H2A/H2B/H3/H4 (Histone) Fvb6-4 - View
Fragaria x ananassa FAN05G0181 K11251 - histone H2A (H2A) Fvb6-3 + View
Fragaria x ananassa FAN05G2550 K11251 - histone H2A (H2A) Fvb6-3 - View
Fragaria vesca FvH4_6g04950 K11251 - histone H2A (H2A) Fvb6 - View
Gossypium hirsutum Gohir.A08G213000 K11251 - histone H2A (H2A) A08 + View
Gossypium hirsutum Gohir.A11G260400 K11251 - histone H2A (H2A) A11 - View
Gossypium hirsutum Gohir.D11G270700 K11251 - histone H2A (H2A) D11 - View
Gossypium hirsutum Gohir.D08G230000 K11251 - histone H2A (H2A) D08 + View
Gossypium hirsutum Gohir.A08G071500 K11251 - histone H2A (H2A) A08 + View
Gossypium hirsutum Gohir.A13G172300 K11251 - histone H2A (H2A) A13 - View
Glycine max Glyma.03G148100 K11251 - histone H2A (H2A) Gm03 - View
Glycine max Glyma.19G239200 K11251 - histone H2A (H2A) Gm19 + View
Glycine max Glyma.03G241800 K11251 - histone H2A (H2A) Gm03 + View
Gossypium raimondii Gorai.004G084700 Chr04 + View
Gossypium raimondii Gorai.004G244200 Chr04 + View
Gossypium raimondii Gorai.007G291200 Chr07 - View
Lupinus albus Lalb_Chr15g0077011 K11251 - histone H2A (H2A) Lalb_Chr15 - View
Lupinus albus Lalb_Chr18g0045351 K11251 - histone H2A (H2A) Lalb_Chr18 - View
Lotus japonicus Lj1g0015102 K11251 - histone H2A (H2A) chr1 + View
Lotus japonicus Lj1g0011017 K11251 - histone H2A (H2A) chr1 - View
Lonicera japonica Lj9A678T38 GWHAAZE00000009 - View
Malus domestica MD12G1227300 Histone superfamily protein Chr12 + View
Malus domestica MD04G1212600 Histone superfamily protein Chr04 + View
Manihot esculenta Manes.08G124800 Chromosome08 + View
Manihot esculenta Manes.09G161500 Chromosome09 - View
Medicago truncatula Medtr7g114040 histone H2A 6 chr7 + View
Punica granatum PGR083G1496 NC_045133.1 + View
Punica granatum PGR031G2735 NC_045127.1 + View
Prunus persica Prupe.6G332900 K11251 - histone H2A (H2A) Pp06 + View
Pisum sativum Psat3g009320 Histone H2A signature chr3LG5 - View
Populus trichocarpa Potri.013G028800 K11251 - histone H2A (H2A) Chr13 + View
Populus trichocarpa Potri.005G040700 K11251 - histone H2A (H2A) Chr05 + View
Phaseolus vulgaris Phvul.006G095800 K11251 - histone H2A (H2A) Chr06 + View
Quercus lobata QL12p023407 12 + View
Quercus lobata QL03p002910 3 + View
Rosa chinensis RcHm_v2.0_Chr3g0453441 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim07G0178300 chr07 - View
Salix brachista Sabra05G0039800 GWHAAZH00000005 + View
Salix brachista Sabra13G0029100 GWHAAZH00000013 + View
Simmondsia chinensis Sc09g0003600 GWHAASQ00000009 - View
Simmondsia chinensis Sc16g0008260 GWHAASQ00000016 - View
Sechium edule Sed0016486 LG05 - View
Sechium edule Sed0019584 LG04 - View
Schrenkiella parvula SpUn0002_0190 K11251 - histone H2A (H2A) un0002 - View
Selenicereus undatus Hund07024 Scaffold_33676 - View
Trochodendron aralioides TAR365G0702 group16 + View
Trochodendron aralioides TAR633G0211 group2 + View
Theobroma cacao Thecc.05G311700 Histone H2A 7 Chromosome_5 - View
Theobroma cacao Thecc.05G297600 Histone superfamily protein Chromosome_5 - View
Tarenaya hassleriana THA.LOC104821700 histone H2AX NW_010966542.1 - View
Tarenaya hassleriana THA.LOC104802812 probable histone H2AXb NW_010970490.1 + View
Tarenaya hassleriana THA.LOC104805846 probable histone H2AXb NW_010961290.1 - View
Tripterygium wilfordii TWI12G0904 NC_052243.1 + View
Tripterygium wilfordii TWI56G0891 NC_052242.1 + View
Tripterygium wilfordii TWI59G0978 NC_052248.1 - View
Vaccinium macrocarpon vmacro02521 Similar to HIS2A: Histone H2AX (Cicer arietinum OX%3D3827) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro05045 Similar to HIS2A: Histone H2AX (Cicer arietinum OX%3D3827) chr12_Vaccinium_macrocarpon_Stevens_v1 + View