Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0029831 PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X1 [Nelumbo nucifera] Chr7 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr6.3372 chr6 + View
Acer truncatum Atru.chr2.3604 chr2 + View
Actinidia chinensis Actinidia05031 Lachesis_group19 + View
Actinidia chinensis Actinidia21446 Lachesis_group15 + View
Avicennia marina MSTRG.6646 ScioBoG_102840_HRSCAF_103099 + View
Avicennia marina MSTRG.6986 ScioBoG_102840_HRSCAF_103099 - View
Avicennia marina MSTRG.14926 ScioBoG_19538_HRSCAF_19626 + View
Amaranthus hybridus Ah.04g166450 Zinc finger CCCH domain-containing protein 18 (AtC3H18) (EC 3.1.-.-) AmaHy_arrow1_Scaffold_4 - View
Aquilegia oxysepala Aqoxy4G02216 CHR04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.9UPH40 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 arahy.Tifrunner.gnm1.Arahy.11 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XV5AQQ PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 arahy.Tifrunner.gnm1.Arahy.01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.H764QZ PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 arahy.Tifrunner.gnm1.Arahy.07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.5A3FI2 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 arahy.Tifrunner.gnm1.Arahy.17 - View
Arabidopsis thaliana AT2G05160 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein CCCH-type zinc fingerfamily protein with RNA-binding domain%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G52980.1)%3B Has 286 Blast hits to 218 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6%3B Fungi - 0%3B Plants - 277%3B Viruses - 0%3B Other Eukaryotes - 3 (source: NCBI BLink). Chr2 - View
Brassica carinata BcaB08g34497 ChrB08 + View
Brassica carinata BcaC01g03176 ChrC01 - View
Brassica napus A03p44590 A03 + View
Brassica napus C03p55380 C03 + View
Brassica rapa BraA03t13591Z A03 + View
Capsicum annuum CAN.G337.26 PGAv.1.6.scaffold337 + View
Capsicum annuum CAN.G854.6 PGAv.1.6.scaffold854 - View
Cicer arietinum L. Ca_06375_v3 Ca_LG2_v3 - View
Coffea canephora Cc05_g14720 Putative Zinc finger CCCH domain-containing protein 18 chr5 - View
Citrus clementina Ciclev10007876m.g scaffold_1 - View
Citrus clementina Ciclev10014902m.g scaffold_2 + View
Carpinus fangiana Cfa020228 Cfa08 + View
Cardamine hirsuta CARHR103030 Zinc finger CCCH domain-containing protein 18 Chr3 - View
Carya illinoinensis CiPaw.04G196800 PF00076//PF12872//PF16131 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // OST-HTH/LOTUS domain (OST-HTH) // Torus domain (Torus) Chr04 - View
Carya illinoinensis CiPaw.11G201100 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 Chr11 - View
Citrullus lanatus ClCG10G004560 Zinc finger CCCH domain-containing protein CG_Chr10 + View
Cucumis melo MELO3C014131.2 zinc finger CCCH domain-containing protein 18-like chr06 + View
Carica papaya Cpa.g.sc211.14 supercontig_211 + View
Carica papaya Cpa.g.sc12.190 supercontig_12 + View
Chenopodium quinoa AUR62017518 At2g05160: Zinc finger CCCH domain-containing protein 18 C_Quinoa_Scaffold_3458 + View
Chenopodium quinoa AUR62015061 At2g05160: Zinc finger CCCH domain-containing protein 18 C_Quinoa_Scaffold_2888 + View
Capsella rubella Carub.0003s2667 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 scaffold_3 - View
Cucumis sativus L. CsaV3_3G004380 zinc finger CCCH domain-containing protein 18-like chr3 + View
Daucus carota DCAR_019233 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv07861 GWHABJS00000013 + View
Davidia involucrata Dinv10314 GWHABJS00000001 - View
Davidia involucrata Dinv40836 GWHABJS00000013 + View
Durio zibethinus Duzib138G0665 NW_019167893.1 - View
Durio zibethinus Duzib133G0457 NW_019167938.1 - View
Erigeron canadensis ECA236G4235 Conyza_canadensis_scaffold:3 - View
Erigeron canadensis ECA240G3854 Conyza_canadensis_scaffold:5 + View
Eucalyptus grandis Eucgr.F00620 Chr06 + View
Eucalyptus grandis Eucgr.K00655 Chr11 + View
Erythranthe guttata Migut.M00029 scaffold_13 - View
Erythranthe guttata Migut.M01674 scaffold_13 + View
Eutrema salsugineum Thhalv10002476m.g PTHR24009:SF4 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 scaffold_4 - View
Fragaria x ananassa FAN21G0184 PF00642//PF12872 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // OST-HTH/LOTUS domain (OST-HTH) Fvb3-2 - View
Fragaria x ananassa FAN02G3440 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 Fvb6-4 - View
Fragaria vesca FvH4_6g40900 PF00076//PF12872 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // OST-HTH/LOTUS domain (OST-HTH) Fvb6 - View
Gossypium hirsutum Gohir.D01G073700 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 D01 - View
Gossypium hirsutum Gohir.A01G087400 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 A01 - View
Glycine max Glyma.02G298000 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 Gm02 - View
Glycine max Glyma.18G081000 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 Gm18 + View
Glycine max Glyma.08G326000 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 Gm08 - View
Glycine max Glyma.14G015700 PF00076//PF00642//PF12872 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // OST-HTH/LOTUS domain (OST-HTH) Gm14 + View
Gossypium raimondii Gorai.002G096600 Chr02 - View
Lupinus albus Lalb_Chr04g0247961 PF00076//PF00642//PF12872 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // OST-HTH/LOTUS domain (OST-HTH) Lalb_Chr04 + View
Lotus japonicus LjContig00272g0016751 PF00076//PF12872 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // OST-HTH/LOTUS domain (OST-HTH) Contig00272 - View
Lotus japonicus Lj6g0018510 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 chr6 + View
Lonicera japonica Lj8A134T79 GWHAAZE00000008 - View
Lonicera japonica Lj1A792G58 GWHAAZE00000001 - View
Lactuca sativa Lsat_1_v5_gn_7_95520 PF00076//PF12872 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // OST-HTH/LOTUS domain (OST-HTH) Lsat_1_v8_lg_7 + View
Lactuca sativa Lsat_1_v5_gn_9_104521 Lsat_1_v8_lg_9 - View
Magnolia biondii MBI19_g25575_MAGBIO AED:0.15 Chr19 - View
Magnolia biondii MBI16_g36321_MAGBIO AED:0.06 Chr16 - View
Malus domestica MD03G1188600 CCCH-type zinc fingerfamily protein with RNA-binding domain Chr03 + View
Malus domestica MD09G1123600 CCCH-type zinc fingerfamily protein with RNA-binding domain Chr09 + View
Manihot esculenta Manes.03G137901 Chromosome03 - View
Manihot esculenta Manes.13G062600 Chromosome13 - View
Manihot esculenta Manes.15G062900 Chromosome15 + View
Medicago truncatula Medtr3g056160 RNA-binding domain CCCH-type zinc finger protein chr3 - View
Nelumbo nucifera Nn1g07443 chr1 - View
Nicotiana tabacum Nitab4.5_0000461g0090 OST-HTH/LOTUS domain, Nucleotide-binding, alpha-beta plait, RNA recognition motif domain, ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal, Zinc finger, CCCH-type, ATPase, F1 complex beta subunit/V1 complex, C-terminal Nitab4.5_0000461 - View
Nicotiana tabacum Nitab4.5_0000441g0100 Nucleotide-binding, alpha-beta plait, OST-HTH/LOTUS domain, RNA recognition motif domain, Zinc finger, CCCH-type Nitab4.5_0000441 + View
Olea europaea Oeu005491.1 chr10 - View
Petunia axillaris Peaxi162Scf00776g00326 CCCH-type zinc fingerfamily protein with RNA-binding domain Peaxi162Scf00776 + View
Punica granatum PGR142G1960 NC_045128.1 - View
Prunus persica Prupe.3G200500 Pp03 - View
Papaver somniferum PSO675G5633 NC_039358.1 + View
Papaver somniferum PSO541G6206 NC_039363.1 - View
Populus trichocarpa Potri.002G221100 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 Chr02 - View
Populus trichocarpa Potri.014G165500 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 Chr14 + View
Phaseolus vulgaris Phvul.006G053500 Chr06 - View
Quercus lobata QL08p028346 8 + View
Rosa chinensis RcHm_v2.0_Chr5g0042651 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim06G0174300 chr06 - View
Striga asiatica SGA_v2.0_scaffold73G24515 scaffold73 + View
Salvia bowleyana SalBow8G2360 GWHASIU00000004 - View
Salvia bowleyana SalBow7G0699 GWHASIU00000005 + View
Salix brachista Sabra02G0169000 GWHAAZH00000002 - View
Salix brachista Sabra14G0126100 GWHAAZH00000014 + View
Simmondsia chinensis Sc21g0000810 GWHAASQ00000021 + View
Sechium edule Sed0025163 LG08 + View
Solanum lycopersicum Solyc07g047940.4 Zinc finger transcription factor 49 SL4.0ch07 + View
Solanum lycopersicum Solyc07g065290.3 Zinc finger transcription factor 51 SL4.0ch07 - View
Schrenkiella parvula Sp3g23730 PTHR24009//PTHR24009:SF4 - FAMILY NOT NAMED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18 ch3-2 + View
Solanum pennellii Sopen07g033500 CCCH-type zinc fingerfamily protein with RNA-binding domain | FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 6 plant structures | EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein Spenn-ch07 - View
Solanum pennellii Sopen07g024370 CCCH-type zinc fingerfamily protein with RNA-binding domain | FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 6 plant structures | EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein Spenn-ch07 + View
Solanum tuberosum PGSC0003DMG400006131 RNA binding protein ST4.03ch07 + View
Solanum tuberosum PGSC0003DMG400022185 RNA binding protein ST4.03ch07 - View
Selenicereus undatus Hund23127 Scaffold_33680 + View
Trochodendron aralioides TAR629G0256 group0 + View
Trochodendron aralioides TAR627G0196 group6 - View
Trochodendron aralioides TAR626G0365 group3 + View
Trochodendron aralioides TAR624G0700 group9 - View
Theobroma cacao Thecc.07G022200 RNA binding protein Chromosome_7 + View
Theobroma cacao Thecc.01G191900 CCCH-type zinc fingerfamily protein with RNA-binding domain Chromosome_1 + View
Tarenaya hassleriana THA.LOC104808848 zinc finger CCCH domain-containing protein 18 isoform X1 NW_010964923.1 - View
Trifolium pratense TPR.G1936 Tp57577_TGAC_v2_LG1 - View
Tripterygium wilfordii TWI36G1427 NC_052237.1 + View
Tripterygium wilfordii TWI39G0374 NC_052250.1 + View
Tripterygium wilfordii TWI18G1033 NC_052241.1 - View
Vaccinium macrocarpon vmacro11559 Similar to At2g05160: Zinc finger CCCH domain-containing protein 18 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro12104 Similar to At2g05160: Zinc finger CCCH domain-containing protein 18 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0540G1941 CM024075.1 + View
Vigna mungo VMungo0647G1102 CM024073.1 - View
Vitis vinifera GSVIVG01030048001 chr12 - View