Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0002216 PREDICTED: RING-H2 finger protein ATL16-like [Sesamum indicum] Chr11 + View
CSS0023011 RING/U-box superfamily protein [Theobroma cacao] Chr5 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G3690 LG-5 - View
Acer truncatum Atru.chr5.1650 chr5 - View
Acer truncatum Atru.chr4.2090 chr4 + View
Actinidia chinensis Actinidia04454 Lachesis_group3 - View
Arabidopsis lyrata AL1G13960 scaffold_1 - View
Arabidopsis lyrata AL8G16880 scaffold_8 - View
Avicennia marina MSTRG.4126 ScioBoG_102837_HRSCAF_103074 - View
Avicennia marina MSTRG.9900 ScioBoG_12795_HRSCAF_12848 + View
Aquilegia oxysepala Aqoxy2G03629 CHR02 - View
Aquilegia oxysepala Aqoxy5G00252 CHR05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.916YDT PTHR14155//PTHR14155:SF99 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL3 arahy.Tifrunner.gnm1.Arahy.06 + View
Arabidopsis thaliana AT1G04360 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: hypocotyl%2C root%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G43420.1)%3B Has 9268 Blast hits to 9239 proteins in 300 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2276%3B Fungi - 656%3B Plants - 4907%3B Viruses - 85%3B Other Eukaryotes - 1344 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT5G43420 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G04360.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Brassica carinata BcaC05g24447 ChrC05 + View
Brassica carinata BcaC06g34654 ChrC06 - View
Brassica napus C05p02550 C05 - View
Brassica napus A10p02780 A10 - View
Brassica napus A06p47850 A06 - View
Brassica napus C08p52240 C08 + View
Brassica napus C07p26020 C07 + View
Brassica oleracea BolC5t29035H C5 - View
Brassica oleracea BolC7t43132H C7 + View
Brassica rapa BraA10t42546Z A10 - View
Brassica rapa BraA06t27655Z A06 - View
Beta vulgaris EL10Ac3g05027 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr3_EL10_PGA_scaffold7 - View
Cannabis sativa CANSAT78G0120 NC_044376.1 + View
Cicer arietinum L. Ca_09687_v3 Ca_LG4_v3 + View
Cicer arietinum L. Ca_09821_v3 Ca_LG4_v3 - View
Cicer arietinum L. Ca_08664_v3 Ca_LG3_v3 - View
Corylus avellana Haze_24613 Similar to ATL16: RING-H2 finger protein ATL16 (Arabidopsis thaliana OX%3D3702) 8 - View
Corylus avellana Haze_11346 Similar to ATL1: RING-H2 finger protein ATL1 (Arabidopsis thaliana OX%3D3702) 9 - View
Coffea canephora Cc03_g05390 Putative RING-H2 finger protein ATL1 chr3 - View
Coffea canephora Cc01_g18430 Putative RING-H2 finger protein ATL16 chr1 + View
Citrus clementina Ciclev10005261m.g scaffold_9 - View
Citrus clementina Ciclev10024118m.g scaffold_3 - View
Carpinus fangiana Cfa008325 Cfa03 + View
Cardamine hirsuta CARHR180180 Ring finger protein, putative Chr6 - View
Cardamine hirsuta CARHR003690 Ring finger protein, putative Chr1 - View
Carya illinoinensis CiPaw.01G186600 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr01 + View
Carya illinoinensis CiPaw.04G185900 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr04 - View
Carya illinoinensis CiPaw.03G262700 K19041 - E3 ubiquitin-protein ligase RNF38/44 [EC:6.3.2.19] (RNF38_44) Chr03 - View
Carya illinoinensis CiPaw.02G113700 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr02 + View
Citrullus lanatus ClCG07G000980 Ring finger protein, putative CG_Chr07 - View
Cucumis melo MELO3C022982.2 RING-H2 finger protein ATL16 chr05 - View
Cucumis melo MELO3C006433.2 RING-H2 finger protein ATL16 chr06 + View
Carica papaya Cpa.g.sc44.76 supercontig_44 + View
Chenopodium quinoa AUR62024724 ATL16: RING-H2 finger protein ATL16 C_Quinoa_Scaffold_1992 + View
Chenopodium quinoa AUR62011883 ATL16: RING-H2 finger protein ATL16 C_Quinoa_Scaffold_2008 + View
Capsella rubella Carub.0008s0518 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_8 - View
Capsella rubella Carub.0001s0353 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_1 - View
Cucumis sativus L. CsaV3_2G012890 RING-H2 finger protein ATL16 chr2 + View
Daucus carota DCAR_027308 hypothetical protein DCARv2_Chr8 + View
Daucus carota DCAR_018473 hypothetical protein DCARv2_Chr5 - View
Daucus carota DCAR_024244 hypothetical protein DCARv2_Chr7 - View
Davidia involucrata Dinv27041 GWHABJS00000014 + View
Durio zibethinus Duzib133G0700 NW_019167938.1 - View
Durio zibethinus Duzib151G0879 NW_019167904.1 - View
Durio zibethinus Duzib052G1172 NW_019167849.1 - View
Durio zibethinus Duzib212G0142 NW_019168026.1 + View
Durio zibethinus Duzib138G0126 NW_019167893.1 - View
Erigeron canadensis ECA236G2528 Conyza_canadensis_scaffold:3 + View
Eucalyptus grandis Eucgr.H03092 Chr08 + View
Erythranthe guttata Migut.G00475 scaffold_7 + View
Erythranthe guttata Migut.N00261 scaffold_14 - View
Erythranthe guttata Migut.D00416 scaffold_4 - View
Eutrema salsugineum Thhalv10003389m.g PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_17 - View
Eutrema salsugineum Thhalv10009604m.g PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED scaffold_5 + View
Fragaria x ananassa FAN12G2207 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb4-3 + View
Fragaria x ananassa FAN22G0260 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb4-1 - View
Fragaria vesca FvH4_4g03440 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb4 - View
Gossypium hirsutum Gohir.A09G226300 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A09 - View
Gossypium hirsutum Gohir.D02G044400 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED D02 - View
Gossypium hirsutum Gohir.A02G038300 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A02 - View
Gossypium hirsutum Gohir.D09G227184 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED D09 - View
Gossypium hirsutum Gohir.A11G130100 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A11 - View
Gossypium hirsutum Gohir.D11G135800 K19041 - E3 ubiquitin-protein ligase RNF38/44 [EC:6.3.2.19] (RNF38_44) D11 - View
Glycine max Glyma.03G162200 Gm03 - View
Glycine max Glyma.19G163600 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm19 - View
Glycine max Glyma.10G187100 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm10 + View
Glycine max Glyma.10G036000 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm10 - View
Glycine max Glyma.20G203400 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm20 - View
Glycine max Glyma.10G007200 PTHR14155//PTHR14155:SF113 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm10 + View
Glycine max Glyma.13G122400 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm13 - View
Gossypium raimondii Gorai.007G145400 Chr07 - View
Gossypium raimondii Gorai.006G249700 Chr06 - View
Gossypium raimondii Gorai.005G049100 Chr05 - View
Lupinus albus Lalb_Chr21g0312331 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lalb_Chr21 + View
Lupinus albus Lalb_Chr02g0152321 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lalb_Chr02 - View
Lotus japonicus Lj6g0023449 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED chr6 + View
Lotus japonicus Lj5g0025979 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED chr5 + View
Lotus japonicus Lj1g0015882 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED chr1 + View
Lonicera japonica Lj3P802T37 GWHAAZE00000003 + View
Lonicera japonica Lj6P662T51 GWHAAZE00000006 - View
Lonicera japonica Lj1C65T7 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_9_8660 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lsat_1_v8_lg_9 - View
Lactuca sativa Lsat_1_v5_gn_8_91140 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lsat_1_v8_lg_8 + View
Malus domestica MD10G1185600 RING/U-box superfamily protein Chr10 + View
Malus domestica MD13G1212600 RING/U-box superfamily protein Chr13 - View
Malus domestica MD05G1199400 RING/U-box superfamily protein Chr05 + View
Malus domestica MD16G1216300 RING/U-box superfamily protein Chr16 - View
Manihot esculenta Manes.03G165400 Chromosome03 + View
Manihot esculenta Manes.15G039400 Chromosome15 - View
Manihot esculenta Manes.12G031500 Chromosome12 - View
Medicago truncatula Medtr1g070140 RING-H2 zinc finger protein chr1 + View
Medicago truncatula Medtr7g096690 RING-H2 zinc finger protein chr7 - View
Nelumbo nucifera Nn3g19627 chr3 - View
Nelumbo nucifera Nn1g02728 chr1 - View
Nicotiana tabacum Nitab4.5_0000436g0190 Unknown Nitab4.5_0000436 - View
Petunia axillaris Peaxi162Scf00024g00251 RING/U-box superfamily protein Peaxi162Scf00024 - View
Punica granatum PGR044G1957 NC_045134.1 + View
Punica granatum PGR004G1410 NC_045131.1 - View
Prunus persica Prupe.1G037600 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Pp01 - View
Prunus persica Prupe.8G225200 K19041 - E3 ubiquitin-protein ligase RNF38/44 [EC:6.3.2.19] (RNF38_44) Pp08 + View
Papaver somniferum PSO210G6636 NC_039359.1 + View
Papaver somniferum PSO832G4412 NC_039367.1 + View
Populus trichocarpa Potri.002G039700 K19041 - E3 ubiquitin-protein ligase RNF38/44 [EC:6.3.2.19] (RNF38_44) Chr02 + View
Populus trichocarpa Potri.010G072700 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr10 + View
Populus trichocarpa Potri.008G165900 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr08 - View
Phaseolus vulgaris Phvul.007G194100 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr07 + View
Phaseolus vulgaris Phvul.007G272700 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr07 - View
Phaseolus vulgaris Phvul.001G160000 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr01 - View
Quercus lobata QL06p017006 6 - View
Quercus lobata QL02p061056 CM012294 + View
Quercus lobata QL09p038258 9 + View
Rhododendron simsii Rhsim13G0034100 chr13 - View
Rhododendron simsii Rhsim04G0184800 chr04 + View
Striga asiatica SGA_v2.0_scaffold67G22769 scaffold67 + View
Salvia bowleyana SalBow4G1910 GWHASIU00000008 - View
Salix brachista Sabra08G0126400 GWHAAZH00000008 - View
Salix brachista Sabra02G0031900 GWHAAZH00000002 + View
Salix brachista Sabra10G0035500 GWHAAZH00000010 - View
Sechium edule Sed0007944 LG05 - View
Sechium edule Sed0027005 LG12 - View
Sechium edule Sed0008755 LG09 + View
Sechium edule Sed0004688 LG02 - View
Sapria himalayana SHI00668 scaffold1_25991295 - View
Solanum lycopersicum Solyc06g053640.1 RING/U-box superfamily protein (AHRD V3.3 *** A0A2U1Q188_ARTAN) SL4.0ch06 + View
Solanum lycopersicum Solyc03g005490.4 RING/U-box superfamily protein (AHRD V3.3 *** A0A2U1Q188_ARTAN) SL4.0ch03 - View
Solanum lycopersicum Solyc09g089890.1 RING/U-box superfamily protein (AHRD V3.3 *** A0A2U1Q188_ARTAN) SL4.0ch09 - View
Schrenkiella parvula Sp1g03170 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED ch1-1 - View
Schrenkiella parvula Sp2g08300 PTHR14155//PTHR14155:SF178 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED ch2-4 + View
Solanum pennellii Sopen09g032830 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch09 - View
Solanum pennellii Sopen06g018750 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch06 + View
Solanum tuberosum PGSC0003DMG400036247 Ring finger protein ST4.03ch03 - View
Solanum tuberosum PGSC0003DMG400017179 Ring finger protein ST4.03ch09 - View
Solanum tuberosum PGSC0003DMG400009718 Ring finger protein ST4.03ch09 - View
Solanum tuberosum PGSC0003DMG400016326 Ring finger protein ST4.03ch06 + View
Trochodendron aralioides TAR633G0578 group2 + View
Trochodendron aralioides TAR362G0799 group17 - View
Theobroma cacao Thecc.04G253300 RING/U-box superfamily protein Chromosome_4 - View
Theobroma cacao Thecc.01G260100 Chromosome_1 + View
Tarenaya hassleriana THA.LOC104826078 RING-H2 finger protein ATL16-like isoform X1 NW_010967707.1 - View
Trifolium pratense TPR.G26455 Tp57577_TGAC_v2_LG1 + View
Tripterygium wilfordii TWI12G1463 NC_052243.1 - View
Tripterygium wilfordii TWI73G0327 NC_052232.1 - View
Tripterygium wilfordii TWI09G1647 NC_052245.1 - View
Vaccinium macrocarpon vmacro02654 Similar to ATL16: RING-H2 finger protein ATL16 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro08469 Similar to ATL1: RING-H2 finger protein ATL1 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1383G1139 CM024070.1 - View
Vigna mungo VMungo0720G0885 CM024071.1 - View
Vigna mungo VMungo0720G2812 CM024071.1 + View
Vigna mungo VMungo0720G2615 CM024071.1 + View
Vitis vinifera GSVIVG01027769001 chr5 - View
Vitis vinifera GSVIVG01028306001 chr7 - View