Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0036711 PREDICTED: polygalacturonase At1g48100 [Vitis vinifera] Chr9 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia02517 Lachesis_group10 + View
Arabidopsis lyrata AL1G54670 scaffold_1 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.08SQ5V PF13229 - Right handed beta helix region (Beta_helix) arahy.Tifrunner.gnm1.Arahy.04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.CCG5WH PF13229 - Right handed beta helix region (Beta_helix) arahy.Tifrunner.gnm1.Arahy.14 - View
Arabidopsis thaliana AT1G48100 Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectin lyase fold (InterPro:IPR012334)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Parallel beta-helix repeat (InterPro:IPR006626)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G02460.1)%3B Has 4526 Blast hits to 4502 proteins in 576 species: Archae - 8%3B Bacteria - 1381%3B Metazoa - 30%3B Fungi - 1439%3B Plants - 1518%3B Viruses - 5%3B Other Eukaryotes - 145 (source: NCBI BLink). Chr1 + View
Beta vulgaris EL10Ac3g06282 3.2.1.15 - Polygalacturonase / Pectinase Chr3_EL10_PGA_scaffold7 + View
Corylus avellana Haze_00815 Similar to At1g48100: Polygalacturonase At1g48100 (Arabidopsis thaliana OX%3D3702) 1 - View
Citrus clementina Ciclev10004899m.g scaffold_9 - View
Cardamine hirsuta CARHR037740 Polygalacturonase, putative Chr1 + View
Carya illinoinensis CiPaw.01G132600 PF13229 - Right handed beta helix region (Beta_helix) Chr01 - View
Chenopodium quinoa AUR62002580 At1g48100: Polygalacturonase At1g48100 C_Quinoa_Scaffold_4480 + View
Chenopodium quinoa AUR62030002 At1g48100: Polygalacturonase At1g48100 C_Quinoa_Scaffold_1447 + View
Capsella rubella Carub.0001s3720 3.2.1.15 - Polygalacturonase / Pectinase scaffold_1 + View
Daucus carota DCAR_023414 hypothetical protein DCARv2_Chr7 - View
Daucus carota DCAR_002533 hypothetical protein DCARv2_Chr1 + View
Daucus carota DCAR_026962 hypothetical protein DCARv2_Chr8 + View
Davidia involucrata Dinv29543 GWHABJS00000014 - View
Davidia involucrata Dinv15614 GWHABJS00000016 + View
Durio zibethinus Duzib151G0005 NW_019167904.1 + View
Eucalyptus grandis Eucgr.H04092 Chr08 + View
Eutrema salsugineum Thhalv10011452m.g 3.2.1.15 - Polygalacturonase / Pectinase scaffold_7 - View
Fragaria x ananassa FAN07G2225 3.2.1.15 - Polygalacturonase / Pectinase Fvb4-4 - View
Fragaria x ananassa FAN17G0184 3.2.1.15 - Polygalacturonase / Pectinase Fvb4-2 - View
Fragaria x ananassa FAN12G1354 PF05347//PF12708 - Complex 1 protein (LYR family) (Complex1_LYR) // Pectate lyase superfamily protein (Pectate_lyase_3) Fvb4-3 - View
Fragaria vesca FvH4_4g20990 3.2.1.15 - Polygalacturonase / Pectinase Fvb4 + View
Glycine max Glyma.15G136700 PF13229 - Right handed beta helix region (Beta_helix) Gm15 - View
Gossypium raimondii Gorai.008G136700 Chr08 + View
Lonicera japonica Lj3C837T5 GWHAAZE00000003 + View
Lonicera japonica Lj6A698T108 GWHAAZE00000006 + View
Lactuca sativa Lsat_1_v5_gn_1_40460 Lsat_1_v8_lg_1 - View
Malus domestica MD16G1140500 Pectin lyase-like superfamily protein Chr16 - View
Malus domestica MD13G1146600 Pectin lyase-like superfamily protein Chr13 - View
Medicago truncatula Medtr2g032710 polygalacturonase plant-like protein chr2 - View
Olea europaea Oeu012202.1 chr17 + View
Punica granatum PGR004G0043 NC_045131.1 - View
Prunus persica Prupe.1G110100 Pp01 - View
Populus trichocarpa Potri.008G100500 3.2.1.15 - Polygalacturonase / Pectinase Chr08 - View
Populus trichocarpa Potri.010G152000 3.2.1.15 - Polygalacturonase / Pectinase Chr10 + View
Populus trichocarpa Potri.014G115700 PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Chr14 + View
Populus trichocarpa Potri.002G190600 PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Chr02 + View
Quercus lobata QL06p013572 6 + View
Rosa chinensis RcHm_v2.0_Chr4g0426531 RcHm_v2.0_Chr4 + View
Salvia bowleyana SalBow8G5053 GWHASIU00000004 - View
Salix brachista Sabra10G0117100 GWHAAZH00000010 + View
Salix brachista Sabra02G0164900 GWHAAZH00000002 - View
Schrenkiella parvula Sp1g35060 3.2.1.15 - Polygalacturonase / Pectinase ch1-2 + View
Trochodendron aralioides TAR365G0995 group16 - View
Theobroma cacao Thecc.04G308700 Pectin lyase-like superfamily protein Chromosome_4 + View
Vigna mungo VMungo0540G1613 CM024075.1 - View
Vanilla planifolia HPP92_013482 Pectin lyase-like superfamily protein *** CM028155.1 - View
Vitis vinifera GSVIVG01017644001 chr5 + View