Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0031816 PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Prunus mume] Chr4 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G15680 LG-6 + View
Actinidia chinensis Actinidia12217 Lachesis_group25 + View
Actinidia chinensis Actinidia35151 Lachesis_group2 - View
Actinidia chinensis Actinidia05864 Lachesis_group11 + View
Arabidopsis lyrata AL4G11910 scaffold_4 + View
Arabidopsis lyrata AL7G12220 scaffold_7 + View
Arabidopsis lyrata AL6G20370 scaffold_6 - View
Avicennia marina MSTRG.15759 ScioBoG_19538_HRSCAF_19626 + View
Avicennia marina MSTRG.2542 ScioBoG_102835_HRSCAF_103059 + View
Arabidopsis thaliana AT5G09950 Tetratricopeptide repeat (TPR)-like superfamily protein Encodes a DYW-class PPR protein required for RNA editing at four sites in mitochondria of A. thaliana. Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1)%3B Has 58090 Blast hits to 13690 proteins in 227 species: Archae - 0%3B Bacteria - 7%3B Metazoa - 25%3B Fungi - 46%3B Plants - 57493%3B Viruses - 0%3B Other Eukaryotes - 519 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT4G39530 Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1)%3B Has 58623 Blast hits to 14407 proteins in 286 species: Archae - 2%3B Bacteria - 7%3B Metazoa - 151%3B Fungi - 177%3B Plants - 57378%3B Viruses - 0%3B Other Eukaryotes - 908 (source: NCBI BLink). Chr4 - View
Carpinus fangiana Cfa018253 Cfa07 - View
Cardamine hirsuta CARHR203380 Pentatricopeptide repeat-containing protein Chr6 + View
Cardamine hirsuta CARHR246740 Pentatricopeptide repeat-containing protein Chr7 - View
Cardamine hirsuta CARHR247200 Pentatricopeptide repeat-containing protein Chr7 + View
Carya illinoinensis CiPaw.04G091500 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr04 - View
Capsella rubella Carub.0007s0190 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_7 + View
Capsella rubella Carub.0006s0839 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_6 - View
Daucus carota DCAR_010796 hypothetical protein DCARv2_Chr3 + View
Davidia involucrata Dinv25988 GWHABJS00000009 - View
Eucalyptus grandis Eucgr.I00314 Chr09 + View
Eucalyptus grandis Eucgr.K02312 Chr11 + View
Lonicera japonica Lj4P859T26 GWHAAZE00000004 - View
Magnolia biondii MBI05_g22325_MAGBIO AED:0.04 Chr05 - View
Malus domestica MD15G1334500 Tetratricopeptide repeat (TPR)-like superfamily protein Chr15 + View
Manihot esculenta Manes.13G089920 Chromosome13 + View
Olea europaea Oeu028363.1 chr18 + View
Punica granatum PGR044G1384 NC_045134.1 - View
Pisum sativum Psat7g051560 PPR repeat family chr7LG7 + View
Papaver somniferum PSO541G3087 NC_039363.1 + View
Phaseolus vulgaris Phvul.004G144300 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr04 - View
Phaseolus vulgaris Phvul.002G261100 PF01535//PF12854//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Chr02 + View
Rosa chinensis RcHm_v2.0_Chr2g0112421 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim01G0003700 chr01 - View
Rhododendron simsii Rhsim08G0119700 chr08 + View
Salvia bowleyana SalBow5G0388 GWHASIU00000003 - View
Salix brachista Sabra15G0029000 GWHAAZH00000015 - View
Sechium edule Sed0022870 LG11 + View
Solanum lycopersicum Solyc04g051480.1 Pentatricopeptide repeat (AHRD V3.3 *** A0A200PQ84_9MAGN) SL4.0ch04 - View
Solanum pennellii Sopen04g022860 Encodes a chloroplast RNA editing factor. | ORGANELLE TRANSCRIPT PROCESSING 84 (OTP84) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch04 - View
Trochodendron aralioides TAR381G0594 group11 + View
Trochodendron aralioides TAR381G1715 group11 + View
Vaccinium macrocarpon vmacro18646 Similar to DOT4: Pentatricopeptide repeat-containing protein DOT4, chloroplastic (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 + View