Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0000665 PREDICTED: uncharacterized protein LOC100250419 isoform X2 [Vitis vinifera] Chr3 - View
CSS0027579 unnamed protein product [Vitis vinifera] Chr9 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G16120 LG-6 + View
Aethionema arabicum Aa31LG4G5610 LG-4 + View
Acer truncatum Atru.chr13.410 chr13 - View
Acer truncatum Atru.chr5.3080 chr5 + View
Actinidia chinensis Actinidia00547 Lachesis_group12 - View
Actinidia chinensis Actinidia27880 Lachesis_group16 + View
Actinidia chinensis Actinidia37994 Lachesis_group7 - View
Actinidia chinensis Actinidia29809 Lachesis_group27 - View
Arabidopsis lyrata AL4G10680 scaffold_4 - View
Arabidopsis lyrata AL7G11080 scaffold_7 - View
Arabidopsis lyrata AL2G35350 scaffold_2 + View
Arabidopsis lyrata AL1G32400 scaffold_1 + View
Avicennia marina MSTRG.20062 ScioBoG_26180_HRSCAF_26306 - View
Avicennia marina MSTRG.16824 ScioBoG_19743_HRSCAF_19834 + View
Amaranthus hybridus Ah.01g019140 AmaHy_arrow1_Scaffold_1 - View
Aquilegia oxysepala Aqoxy5G01555 CHR05 - View
Aquilegia oxysepala Aqoxy6G01192 CHR06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.7PY5NM arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ETV3I7 arahy.Tifrunner.gnm1.Arahy.16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.I0VE2Z arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.V5R7Y7 arahy.Tifrunner.gnm1.Arahy.07 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.0KG03L arahy.Tifrunner.gnm1.Arahy.17 - View
Arabidopsis thaliana AT4G39140 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G21500.1)%3B Has 1557 Blast hits to 280 proteins in 56 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 62%3B Fungi - 44%3B Plants - 176%3B Viruses - 0%3B Other Eukaryotes - 1269 (source: NCBI BLink). RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G21500.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr4 - View
Arabidopsis thaliana AT1G75400 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: N-terminal protein myristoylation%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 17 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G19680.1)%3B Has 285 Blast hits to 222 proteins in 39 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 15%3B Fungi - 19%3B Plants - 178%3B Viruses - 0%3B Other Eukaryotes - 71 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT2G21500 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G39140.5)%3B Has 279 Blast hits to 254 proteins in 46 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 46%3B Fungi - 31%3B Plants - 177%3B Viruses - 0%3B Other Eukaryotes - 23 (source: NCBI BLink). Chr2 - View
Arabidopsis thaliana AT1G19680 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: N-terminal protein myristoylation%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G75400.1)%3B Has 470 Blast hits to 325 proteins in 82 species: Archae - 0%3B Bacteria - 69%3B Metazoa - 71%3B Fungi - 25%3B Plants - 165%3B Viruses - 0%3B Other Eukaryotes - 140 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC08g47013 ChrC08 + View
Brassica carinata BcaC08g47357 ChrC08 - View
Brassica carinata BcaC08g45581 ChrC08 - View
Brassica napus A07p28840 A07 - View
Brassica napus C06p49400 C06 + View
Brassica napus A07p40970 A07 + View
Brassica napus C06p32620 C06 - View
Brassica napus A02p19910 A02 + View
Brassica napus C03p77630 C03 - View
Brassica oleracea BolC6t38384H C6 - View
Brassica oleracea BolC6t39974H C6 + View
Brassica rapa BraA07t30527Z A07 - View
Brassica rapa BraA07t31635Z A07 + View
Brassica rapa BraA02t07028Z A02 + View
Beta vulgaris EL10Ac1g00615 PF13639 - Ring finger domain (zf-RING_2) Chr1_EL10_PGA_scaffold3 - View
Cannabis sativa CANSAT11G1577 NC_044377.1 - View
Cicer arietinum L. Ca_15349_v3 Ca_LG5_v3 - View
Cicer arietinum L. Ca_02079_v3 Ca_LG1_v3 - View
Cicer arietinum L. Ca_13379_v3 Ca_LG4_v3 + View
Corylus avellana Haze_02327 Protein of unknown function 1 + View
Corylus avellana Haze_22554 Protein of unknown function 3 + View
Coffea canephora Cc02_g17280 Putative RING/U-box superfamily protein chr2 - View
Citrus clementina Ciclev10028499m.g scaffold_8 + View
Citrus clementina Ciclev10001121m.g scaffold_5 + View
Carpinus fangiana Cfa013874 Cfa05 + View
Carpinus fangiana Cfa005056 Cfa02 - View
Cardamine hirsuta CARHR068800 RING/U-box superfamily protein Chr2 + View
Cardamine hirsuta CARHR247610 RING/U-box superfamily protein Chr7 + View
Cardamine hirsuta CARHR112420 RING/U-box superfamily protein Chr4 - View
Cardamine hirsuta CARHR020200 RING/U-box superfamily protein Chr1 + View
Carya illinoinensis CiPaw.06G132600 Chr06 + View
Carya illinoinensis CiPaw.08G060600 Chr08 + View
Carya illinoinensis CiPaw.05G069700 KOG0320 - Predicted E3 ubiquitin ligase Chr05 - View
Carya illinoinensis CiPaw.07G157000 Chr07 - View
Citrullus lanatus ClCG11G004160 RING/U-box superfamily protein LENGTH=429 CG_Chr11 - View
Citrullus lanatus ClCG02G004780 RING/U-box superfamily protein LENGTH=421 CG_Chr02 - View
Cucumis melo MELO3C023321.2 RING/U-box protein chr11 + View
Chenopodium quinoa AUR62016771 Protein of unknown function C_Quinoa_Scaffold_3670 + View
Chenopodium quinoa AUR62014483 Protein of unknown function C_Quinoa_Scaffold_1566 - View
Chenopodium quinoa AUR62034518 Protein of unknown function C_Quinoa_Scaffold_1522 + View
Capsella rubella Carub.0004s0054 scaffold_4 - View
Capsella rubella Carub.0002s2227 scaffold_2 + View
Capsella rubella Carub.0001s1922 scaffold_1 + View
Capsella rubella Carub.0007s0102 scaffold_7 - View
Cucumis sativus L. CsaV3_2G015010 RING/U-box superfamily protein chr2 + View
Daucus carota DCAR_028968 hypothetical protein DCARv2_Chr9 - View
Davidia involucrata Dinv39454 GWHABJS00000011 + View
Davidia involucrata Dinv31786 GWHABJS00000002 + View
Davidia involucrata Dinv42039 GWHABJS00000002 + View
Davidia involucrata Dinv23489 GWHABJS00000005 - View
Durio zibethinus Duzib132G1074 NW_019167915.1 - View
Durio zibethinus Duzib248G0497 NW_019168048.1 + View
Durio zibethinus Duzib093G0436 NW_019167937.1 + View
Durio zibethinus Duzib116G0230 NW_019167949.1 - View
Durio zibethinus Duzib041G0630 NW_019167826.1 - View
Durio zibethinus Duzib052G0846 NW_019167849.1 + View
Erigeron canadensis ECA234G4758 Conyza_canadensis_scaffold:4 + View
Eucalyptus grandis Eucgr.F01862 Chr06 - View
Eucalyptus grandis Eucgr.G01695 Chr07 + View
Erythranthe guttata Migut.N01260 scaffold_14 + View
Erythranthe guttata Migut.B00210 scaffold_2 - View
Eutrema salsugineum Thhalv10000174m.g scaffold_15 - View
Eutrema salsugineum Thhalv10018531m.g scaffold_9 - View
Eutrema salsugineum Thhalv10025282m.g scaffold_1 - View
Fragaria x ananassa FAN27G1087 PF00097 - Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) Fvb2-1 - View
Fragaria x ananassa FAN15G3647 PF00097 - Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) Fvb2-4 - View
Fragaria x ananassa FAN20G0016 PF00097 - Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) Fvb2-3 - View
Fragaria x ananassa FAN24G3524 PF00097 - Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) Fvb2-2 - View
Fragaria vesca FvH4_2g09590 PF00097 - Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) Fvb2 + View
Gossypium hirsutum Gohir.D02G096100 D02 + View
Gossypium hirsutum Gohir.A12G042500 A12 - View
Gossypium hirsutum Gohir.D05G194100 D05 - View
Gossypium hirsutum Gohir.A03G079950 A03 + View
Gossypium hirsutum Gohir.D12G029800 D12 + View
Gossypium hirsutum Gohir.D13G030700 D13 - View
Gossypium hirsutum Gohir.A05G190700 A05 - View
Glycine max Glyma.04G010000 Gm04 - View
Glycine max Glyma.06G029500 Gm06 - View
Glycine max Glyma.14G071300 Gm14 - View
Glycine max Glyma.17G253300 Gm17 + View
Glycine max Glyma.06G009900 Gm06 - View
Glycine max Glyma.04G029500 Gm04 - View
Gossypium raimondii Gorai.013G034900 Chr13 - View
Gossypium raimondii Gorai.008G030700 Chr08 + View
Gossypium raimondii Gorai.005G109800 Chr05 + View
Gossypium raimondii Gorai.009G199100 Chr09 - View
Lupinus albus Lalb_Chr24g0398881 Lalb_Chr24 - View
Lupinus albus Lalb_Chr14g0369511 Lalb_Chr14 + View
Lupinus albus Lalb_Chr22g0354581 Lalb_Chr22 - View
Lotus japonicus Lj5g0008104 chr5 + View
Lotus japonicus Lj1g0003151 chr1 - View
Lonicera japonica Lj9C377G11 GWHAAZE00000009 + View
Lonicera japonica Lj5A193T105 GWHAAZE00000005 - View
Lactuca sativa Lsat_1_v5_gn_5_120501 Lsat_1_v8_lg_5 + View
Lactuca sativa Lsat_1_v5_gn_7_91580 Lsat_1_v8_lg_7 + View
Magnolia biondii MBI10_g00754_MAGBIO AED:0.32 Chr10 + View
Malus domestica MD10G1069100 RING/U-box superfamily protein Chr10 - View
Malus domestica MD05G1061300 RING/U-box superfamily protein Chr05 - View
Manihot esculenta Manes.05G155200 Chromosome05 - View
Manihot esculenta Manes.18G021006 Chromosome18 + View
Manihot esculenta Manes.04G087266 Chromosome04 - View
Manihot esculenta Manes.11G091600 Chromosome11 + View
Medicago truncatula Medtr3g117180 RING/U-box protein chr3 + View
Medicago truncatula Medtr3g112230 ubiquitin-protein ligase chr3 + View
Medicago truncatula Medtr1g022505 C3HC4-type RING zinc finger protein chr1 + View
Nelumbo nucifera Nn5g29705 chr5 + View
Olea europaea Oeu061223.1 scaffold864 + View
Olea europaea Oeu055612.1 chr15 + View
Olea europaea Oeu020732.1 chr5 - View
Petunia axillaris Peaxi162Scf00016g00428 RING/U-box superfamily protein Peaxi162Scf00016 - View
Punica granatum PGR042G3147 NC_045130.1 - View
Punica granatum PGR031G0126 NC_045127.1 - View
Prunus persica Prupe.8G091100 Pp08 - View
Pisum sativum Psat5g015600 Zinc finger RING-type profile. chr5LG3 - View
Pisum sativum Psat6g009640 Zinc finger RING-type profile. chr6LG2 + View
Populus trichocarpa Potri.005G231500 Chr05 + View
Populus trichocarpa Potri.004G158400 Chr04 + View
Populus trichocarpa Potri.009G120000 PF00097 - Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) Chr09 + View
Populus trichocarpa Potri.002G031600 Chr02 - View
Phaseolus vulgaris Phvul.001G011700 Chr01 - View
Phaseolus vulgaris Phvul.009G005500 Chr09 - View
Quercus lobata QL02p009591 CM012294 + View
Rhododendron simsii Rhsim05G0071200 chr05 - View
Rhododendron simsii Rhsim11G0180300 chr11 + View
Rhododendron simsii Rhsim07G0242200 chr07 + View
Striga asiatica SGA_v2.0_scaffold58G20503 scaffold58 - View
Striga asiatica SGA_v2.0_scaffold32G13191 scaffold32 + View
Salvia bowleyana SalBow6G6824 GWHASIU00000002 - View
Salvia bowleyana SalBow3G1018 GWHASIU00000006 - View
Salix brachista Sabra02G0025700 GWHAAZH00000002 - View
Salix brachista Sabra04G0105700 GWHAAZH00000004 + View
Salix brachista Sabra05G0178700 GWHAAZH00000005 + View
Salix brachista Sabra09G0092300 GWHAAZH00000009 + View
Simmondsia chinensis Sc08g0000650 GWHAASQ00000008 + View
Sechium edule Sed0017187 LG05 + View
Sechium edule Sed0002025 LG01 - View
Sapria himalayana SHI08121 scaffold7_18583372 + View
Solanum lycopersicum Solyc01g109910.4 RING/U-box superfamily protein (AHRD V3.3 *** Q8L7K7_ARATH) SL4.0ch01 + View
Solanum lycopersicum Solyc10g054030.2 RING/U-box superfamily protein (AHRD V3.3 *** Q8L7K7_ARATH) SL4.0ch10 + View
Schrenkiella parvula Sp4g00660 ch4-1 - View
Schrenkiella parvula Sp7g36680 ch7-6 + View
Schrenkiella parvula Sp5g30540 ch5-7 + View
Solanum pennellii Sopen10g023880 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch10 + View
Solanum pennellii Sopen01g052100 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch01 + View
Solanum tuberosum PGSC0003DMG400025731 Zinc ion binding protein ST4.03ch10 + View
Solanum tuberosum PGSC0003DMG400038651 Ubiquitin-protein ligase ST4.03ch01 + View
Selenicereus undatus Hund00241 Scaffold_33678 - View
Selenicereus undatus Hund26894 Scaffold_2055 - View
Trochodendron aralioides TAR381G1125 group11 - View
Theobroma cacao Thecc.02G080600 RING/U-box superfamily protein Chromosome_2 - View
Theobroma cacao Thecc.08G033300 RING/U-box superfamily protein Chromosome_8 + View
Trifolium pratense TPR.G12449 Tp57577_TGAC_v2_LG7 - View
Tripterygium wilfordii TWI56G0753 NC_052242.1 + View
Tripterygium wilfordii TWI31G0979 NC_052233.1 + View
Tripterygium wilfordii TWI79G0980 NC_052238.1 + View
Tripterygium wilfordii TWI12G0710 NC_052243.1 - View
Vaccinium macrocarpon vmacro02079 Protein of unknown function chr1_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro17462 Protein of unknown function chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro04299 Protein of unknown function chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1309G2485 CM024072.1 + View
Vigna mungo VMungo1309G2825 CM024072.1 + View
Vitis vinifera GSVIVG01023822001 chr3 - View
Vitis vinifera GSVIVG01009771001 chr18 + View