Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0034210 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Malus domestica] Chr5 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G2190 LG-4 + View
Acer truncatum Atru.chr2.2152 chr2 - View
Acer truncatum Atru.chr6.2791 chr6 - View
Actinidia chinensis Actinidia09811 Lachesis_group5 - View
Actinidia chinensis Actinidia11155 Lachesis_group5 - View
Arabidopsis lyrata AL2G39230 scaffold_2 - View
Avicennia marina MSTRG.14960 ScioBoG_19538_HRSCAF_19626 + View
Avicennia marina MSTRG.12866 ScioBoG_17730_HRSCAF_17811 - View
Avicennia marina MSTRG.14230 ScioBoG_18782_HRSCAF_18867 + View
Aquilegia oxysepala Aqoxy4G00341 CHR04 - View
Aquilegia oxysepala Aqoxy1G02060 CHR01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4RYA37 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED arahy.Tifrunner.gnm1.Arahy.18 + View
Arabidopsis thaliana AT1G16910 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) LIGHT SENSITIVE HYPOCOTYLS 8 (LSH8)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G78815.1)%3B Has 310 Blast hits to 310 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 14%3B Fungi - 0%3B Plants - 296%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G78815 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) LIGHT SENSITIVE HYPOCOTYLS 7 (LSH7)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: inflorescence meristem%2C hypocotyl%2C root%2C flower%3B EXPRESSED DURING: petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936)%3B BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G16910.1)%3B Has 309 Blast hits to 309 proteins in 18 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 12%3B Fungi - 0%3B Plants - 297%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC03g15842 ChrC03 - View
Brassica carinata BcaB03g16037 ChrB03 - View
Brassica carinata BcaB05g25157 ChrB05 - View
Brassica napus C02p35950 C02 - View
Brassica napus A02p22380 A02 - View
Brassica napus A07p44020 A07 - View
Brassica oleracea BolC2t09606H C2 - View
Brassica rapa BraA02t07242Z A02 - View
Beta vulgaris EL10Ac4g08340 PTHR31165:SF9 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Chr4_EL10_PGA_scaffold1 + View
Capsicum annuum CAN.G1119.4 PGAv.1.6.scaffold1119 - View
Capsicum annuum CAN.G375.12 PGAv.1.6.scaffold375 + View
Cannabis sativa CANSAT35G1845 NC_044378.1 + View
Cicer arietinum L. Ca_03982_v3 Ca_LG1_v3 - View
Cicer arietinum L. Ca_01452_v3 Ca_LG1_v3 - View
Corylus avellana Haze_09326 Similar to LSH10: Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 (Arabidopsis thaliana OX%3D3702) 4 - View
Coffea canephora Cc05_g11130 Predicted protein chr5 - View
Coffea canephora Cc05_g08370 Protein of unknown function (DUF640) chr5 + View
Citrus clementina Ciclev10022456m.g scaffold_3 - View
Citrus clementina Ciclev10016699m.g scaffold_2 + View
Cardamine hirsuta CARHR072380 Protein of unknown function (DUF640) Chr2 - View
Carya illinoinensis CiPaw.12G113600 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Chr12 - View
Carya illinoinensis CiPaw.11G160700 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Chr11 - View
Cucumis melo MELO3C025635.2 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 chr07 - View
Carica papaya Cpa.g.sc77.2 supercontig_77 + View
Chenopodium quinoa AUR62019573 LSH10: Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 C_Quinoa_Scaffold_2127 - View
Capsella rubella Carub.0002s2564 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED scaffold_2 - View
Daucus carota DCAR_019597 hypothetical protein DCARv2_Chr5 + View
Daucus carota DCAR_021023 hypothetical protein DCARv2_Chr6 - View
Davidia involucrata Dinv18701 GWHABJS00000001 - View
Davidia involucrata Dinv14991 GWHABJS00000001 - View
Davidia involucrata Dinv18362 GWHABJS00000013 + View
Davidia involucrata Dinv16772 GWHABJS00000020 - View
Durio zibethinus Duzib187G1155 NW_019167860.1 + View
Durio zibethinus Duzib213G0900 NW_019167993.1 + View
Durio zibethinus Duzib268G0751 NW_019168270.1 + View
Erigeron canadensis ECA240G0388 Conyza_canadensis_scaffold:5 - View
Eucalyptus grandis Eucgr.A01916 Chr01 + View
Eucalyptus grandis Eucgr.F03266 Chr06 + View
Eucalyptus grandis Eucgr.F01238 Chr06 + View
Erythranthe guttata Migut.M00732 scaffold_13 - View
Eutrema salsugineum Thhalv10019792m.g PTHR31165:SF9 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED scaffold_9 + View
Fragaria x ananassa FAN02G2571 PTHR31165//PTHR31165:SF10 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Fvb6-4 + View
Fragaria x ananassa FAN16G3635 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Fvb3-3 - View
Fragaria x ananassa FAN21G2976 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Fvb3-2 + View
Fragaria x ananassa FAN05G1689 PTHR31165:SF10 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Fvb6-3 - View
Fragaria x ananassa FAN25G2954 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Fvb3-1 + View
Fragaria x ananassa FAN11G2011 PTHR31165:SF9 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Fvb3-4 + View
Fragaria x ananassa FAN14G2964 PTHR31165:SF10 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Fvb6-1 - View
Fragaria x ananassa FAN09G2364 PTHR31165:SF10 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Fvb6-2 - View
Fragaria vesca FvH4_3g18340 PTHR31165:SF9 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Fvb3 - View
Fragaria vesca FvH4_6g27400 PTHR31165//PTHR31165:SF10 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Fvb6 + View
Gossypium hirsutum Gohir.D05G341300 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED D05 - View
Gossypium hirsutum Gohir.A01G055200 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED A01 - View
Gossypium hirsutum Gohir.A04G041900 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED A04 + View
Gossypium hirsutum Gohir.A08G234500 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED A08 - View
Gossypium hirsutum Gohir.D01G042758 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED D01 - View
Gossypium hirsutum Gohir.D08G254900 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED D08 - View
Glycine max Glyma.06G277400 PTHR31165//PTHR31165:SF10 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Gm06 - View
Glycine max Glyma.12G128100 PTHR31165//PTHR31165:SF10 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Gm12 + View
Glycine max Glyma.13G270300 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Gm13 + View
Glycine max Glyma.13G290600 PTHR31165//PTHR31165:SF10 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Gm13 - View
Glycine max Glyma.12G210800 PTHR31165//PTHR31165:SF10 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Gm12 + View
Glycine max Glyma.12G229500 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Gm12 - View
Gossypium raimondii Gorai.004G272000 Chr04 - View
Gossypium raimondii Gorai.002G061000 Chr02 - View
Gossypium raimondii Gorai.009G368000 Chr09 - View
Hydrangea macrophylla Hma1.2p1_0290F.1_g114770 Hma1.2p1_0290F.1 + View
Lupinus albus Lalb_Chr03g0031141 PTHR31165:SF9 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Lalb_Chr03 - View
Lupinus albus Lalb_Chr14g0367501 PTHR31165//PTHR31165:SF10 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Lalb_Chr14 + View
Lupinus albus Lalb_Chr22g0356931 PTHR31165//PTHR31165:SF10 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Lalb_Chr22 + View
Lupinus albus Lalb_Chr20g0109281 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Lalb_Chr20 - View
Lotus japonicus Lj3g0014804 PTHR31165:SF9 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED chr3 + View
Lonicera japonica Lj1P830T38 GWHAAZE00000001 - View
Lonicera japonica Lj1P681T13 GWHAAZE00000001 + View
Lonicera japonica Lj8P148T29 GWHAAZE00000008 + View
Lonicera japonica Lj8C101T13 GWHAAZE00000008 - View
Lactuca sativa Lsat_1_v5_gn_9_100061 PTHR31165:SF9 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Lsat_1_v8_lg_9 + View
Magnolia biondii MBI06_g08590_MAGBIO AED:0.44 Chr06 + View
Malus domestica MD11G1263200 Protein of unknown function (DUF640) Chr11 + View
Malus domestica MD03G1242600 Protein of unknown function (DUF640) Chr03 + View
Malus domestica MD17G1230700 Protein of unknown function (DUF640) Chr17 - View
Manihot esculenta Manes.15G094500 Chromosome15 + View
Manihot esculenta Manes.03G101700 Chromosome03 - View
Medicago truncatula Medtr2g092950 DUF640 family protein chr2 + View
Medicago truncatula Medtr2g076400 DUF640 family protein chr2 - View
Nelumbo nucifera Nn1g04421 chr1 + View
Nicotiana tabacum Nitab4.5_0000383g0150 Domain of unknown function DUF640 Nitab4.5_0000383 - View
Nicotiana tabacum Nitab4.5_0000246g0300 Domain of unknown function DUF640 Nitab4.5_0000246 + View
Olea europaea Oeu061356.1 chr21 + View
Olea europaea Oeu031033.1 chr6 - View
Petunia axillaris Peaxi162Scf00111g01424 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 Peaxi162Scf00111 - View
Punica granatum PGR083G1134 NC_045133.1 + View
Punica granatum PGR031G3828 NC_045127.1 + View
Punica granatum PGR142G2748 NC_045128.1 - View
Prunus persica Prupe.4G165300 Pp04 - View
Prunus persica Prupe.3G118100 Pp03 - View
Populus trichocarpa Potri.001G390900 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Chr01 - View
Populus trichocarpa Potri.011G109900 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Chr11 - View
Phaseolus vulgaris Phvul.011G162700 PTHR31165:SF9 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Chr11 - View
Phaseolus vulgaris Phvul.005G095100 PTHR31165:SF10 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-RELATED Chr05 - View
Phaseolus vulgaris Phvul.005G066200 PTHR31165:SF9 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED Chr05 + View
Quercus lobata QL08p041767 8 + View
Quercus lobata QL08p026312 8 - View
Rosa chinensis RcHm_v2.0_Chr5g0030991 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim06G0207500 chr06 + View
Striga asiatica SGA_v2.0_scaffold34G13780 scaffold34 + View
Salvia bowleyana SalBow8G0018 GWHASIU00000004 + View
Salix brachista Sabra11G0097400 GWHAAZH00000011 - View
Salix brachista Sabra16G0256100 GWHAAZH00000016 - View
Simmondsia chinensis Sc03g0010490 GWHAASQ00000003 - View
Simmondsia chinensis Sc16g0007540 GWHAASQ00000016 + View
Sechium edule Sed0021365 LG05 - View
Solanum lycopersicum Solyc12g014260.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 (AHRD V3.3 *** A0A2G3BCH5_CAPCH) SL4.0ch12 - View
Solanum lycopersicum Solyc10g007310.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 (AHRD V3.3 *** A0A2G3BCH5_CAPCH) SL4.0ch10 + View
Schrenkiella parvula Sp5g33850 PTHR31165//PTHR31165:SF9 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-RELATED ch5-7 - View
Solanum pennellii Sopen10g003120 LIGHT SENSITIVE HYPOCOTYLS 10 (LSH10) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 15 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 | BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) Spenn-ch10 + View
Solanum pennellii Sopen07g030710 LIGHT SENSITIVE HYPOCOTYLS 10 (LSH10) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 15 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 | BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) Spenn-ch07 - View
Solanum tuberosum PGSC0003DMG401007101 Conserved gene of unknown function ST4.03ch07 - View
Solanum tuberosum PGSC0003DMG400021301 Conserved gene of unknown function ST4.03ch10 + View
Solanum tuberosum PGSC0003DMG400015386 Conserved gene of unknown function ST4.03ch12 + View
Trochodendron aralioides TAR624G0381 group9 - View
Trochodendron aralioides TAR626G0789 group3 + View
Trochodendron aralioides TAR627G0055 group6 + View
Trochodendron aralioides TAR629G1773 group0 - View
Theobroma cacao Thecc.07G110500 Uncharacterized protein Chromosome_7 + View
Trifolium pratense TPR.G11542 Tp57577_TGAC_v2_LG7 + View
Trifolium pratense TPR.G13938 Tp57577_TGAC_v2_LG7 - View
Tripterygium wilfordii TWI38G0670 NC_052252.1 + View
Tripterygium wilfordii TWI59G0888 NC_052248.1 - View
Vaccinium macrocarpon vmacro11934 Similar to LSH10: Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1080G1069 CM024079.1 - View
Vigna mungo VMungo1080G0908 CM024079.1 + View
Vigna mungo VMungo1127G1723 CM024076.1 + View
Vitis vinifera GSVIVG01020708001 chr12 - View
Vitis vinifera GSVIVG01014203001 chr19 - View