Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0006932 PREDICTED: E3 ubiquitin-protein ligase RHA1B [Nicotiana sylvestris] Chr12 - View
CSS0017202 PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Nelumbo nucifera] Chr14 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G650 LG-5 - View
Aethionema arabicum Aa31LG1G27470 LG-1 - View
Acer truncatum Atru.chr9.2150 chr9 + View
Acer truncatum Atru.chr5.534 chr5 - View
Actinidia chinensis Actinidia27371 Lachesis_group14 - View
Actinidia chinensis Actinidia10046 Lachesis_group0 + View
Actinidia chinensis Actinidia20885 Lachesis_group6 + View
Arabidopsis lyrata AL6G53180 scaffold_6 - View
Arabidopsis lyrata AL5G43760 scaffold_5 - View
Arabidopsis lyrata AL2G11300 scaffold_2 + View
Aquilegia oxysepala Aqoxy7G00254 CHR07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.8S0LND PTHR14155:SF175 - E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATED arahy.Tifrunner.gnm1.Arahy.04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.8LW08C PTHR14155//PTHR14155:SF2 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL60 arahy.Tifrunner.gnm1.Arahy.12 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.59P1C9 PTHR14155:SF175 - E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATED arahy.Tifrunner.gnm1.Arahy.14 - View
Arabidopsis thaliana AT4G00305 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: endomembrane system%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: brassinosteroid-responsive RING-H2 (TAIR:AT3G61460.1)%3B Has 6452 Blast hits to 6437 proteins in 243 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1579%3B Fungi - 466%3B Plants - 3776%3B Viruses - 3%3B Other Eukaryotes - 628 (source: NCBI BLink). Chr4 + View
Arabidopsis thaliana AT1G63840 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to abscisic acid stimulus%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41400.1)%3B Has 7174 Blast hits to 7158 proteins in 242 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1914%3B Fungi - 486%3B Plants - 3881%3B Viruses - 16%3B Other Eukaryotes - 877 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT3G61460 brassinosteroid-responsive RING-H2 Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. brassinosteroid-responsive RING-H2 (BRH1)%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to brassinosteroid stimulus%2C response to chitin%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1)%3B Has 6755 Blast hits to 6739 proteins in 268 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1714%3B Fungi - 535%3B Plants - 3593%3B Viruses - 29%3B Other Eukaryotes - 884 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaC07g40643 ChrC07 - View
Brassica carinata BcaC03g16038 ChrC03 + View
Brassica napus A09p53510 A09 - View
Brassica napus C02p37930 C02 + View
Brassica napus C08p36330 C08 - View
Brassica napus C09p16750 C09 - View
Brassica napus A02p24080 A02 + View
Brassica napus C06p27480 C06 - View
Brassica oleracea BolC2t09810H C2 + View
Brassica oleracea BolC8t51216H C8 - View
Brassica oleracea BolC9t54576H C9 - View
Brassica rapa BraA09t40775Z A09 - View
Beta vulgaris EL10Ac5g12806 KOG1493 - Anaphase-promoting complex (APC), subunit 11 Chr5_EL10_PGA_scaffold2 - View
Cannabis sativa CANSAT56G0934 NC_044371.1 + View
Cicer arietinum L. Ca_23603_v3 Ca_LG7_v3 + View
Cicer arietinum L. Ca_00828_v3 Ca_LG1_v3 + View
Cicer arietinum L. Ca_10939_v3 Ca_LG4_v3 - View
Corylus avellana Haze_15539 Similar to BRH1: Brassinosteroid-responsive RING protein 1 (Arabidopsis thaliana OX%3D3702) 11 - View
Corylus avellana Haze_08817 Similar to BRH1: Brassinosteroid-responsive RING protein 1 (Arabidopsis thaliana OX%3D3702) 4 - View
Coffea canephora Cc08_g15040 Putative E3 ubiquitin-protein ligase RHA1B chr8 - View
Coffea canephora Cc02_g38340 Putative E3 ubiquitin-protein ligase RHA1B chr2 - View
Citrus clementina Ciclev10024594m.g scaffold_3 + View
Citrus clementina Ciclev10024600m.g scaffold_3 + View
Carpinus fangiana Cfa012200 Cfa05 + View
Carpinus fangiana Cfa003894 Cfa01 + View
Cardamine hirsuta CARHR248390 RING finger family protein Chr8 + View
Cardamine hirsuta CARHR047330 RING finger family protein Chr2 + View
Cardamine hirsuta CARHR212920 RING finger family protein Chr7 + View
Cardamine hirsuta CARHR171800 RING finger family protein Chr5 - View
Carya illinoinensis CiPaw.12G090700 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Chr12 + View
Carya illinoinensis CiPaw.11G132300 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Chr11 + View
Carya illinoinensis CiPaw.02G033400 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Chr02 - View
Carya illinoinensis CiPaw.01G064200 PTHR14155:SF175 - E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATED Chr01 - View
Citrullus lanatus ClCG01G002500 RING finger family protein CG_Chr01 + View
Citrullus lanatus ClCG06G003510 RING finger protein CG_Chr06 + View
Cucumis melo MELO3C005696.2 E3 ubiquitin-protein ligase RHA1B chr09 - View
Cucumis melo MELO3C021190.2 E3 ubiquitin-protein ligase RHA1B chr11 - View
Cucumis melo MELO3C006095.2 RING-H2 zinc finger protein chr06 + View
Corchorus olitorius COL.COLO4_12742 Zinc finger%2C RING-type AWUE01014941.1 - View
Corchorus olitorius COL.COLO4_34501 Zinc finger%2C RING-type AWUE01022401.1 - View
Carica papaya Cpa.g.sc11.36 supercontig_11 - View
Chenopodium quinoa AUR62004389 RHA1B: E3 ubiquitin-protein ligase RHA1B C_Quinoa_Scaffold_4250 - View
Chenopodium quinoa AUR62010717 RHA1B: E3 ubiquitin-protein ligase RHA1B C_Quinoa_Scaffold_1280 - View
Chenopodium quinoa AUR62022596 RHA1B: E3 ubiquitin-protein ligase RHA1B C_Quinoa_Scaffold_1870 - View
Capsella rubella Carub.0002s0101 PTHR14155 - RING FINGER DOMAIN-CONTAINING scaffold_2 + View
Capsella rubella Carub.0006s3694 PTHR14155:SF102 - RING ZINC FINGER-CONTAINING PROTEIN scaffold_6 - View
Capsella rubella Carub.0005s2815 PTHR14155:SF110 - RING/U-BOX DOMAIN-CONTAINING PROTEIN scaffold_5 - View
Cucumis sativus L. CsaV3_3G008780 Ubiquitin-protein ligase E3 chr3 + View
Cucumis sativus L. CsaV3_5G002600 E3 ubiquitin-protein ligase RHA1B chr5 + View
Cucumis sativus L. CsaV3_6G000800 E3 ubiquitin-protein ligase RHA1B chr6 - View
Daucus carota DCAR_008363 hypothetical protein DCARv2_Chr2 + View
Daucus carota DCAR_025202 hypothetical protein DCARv2_Chr7 - View
Davidia involucrata Dinv38918 GWHABJS00000003 + View
Davidia involucrata Dinv37616 GWHABJS00000017 + View
Davidia involucrata Dinv43842 GWHABJS00000016 - View
Davidia involucrata Dinv32503 GWHABJS00000020 - View
Durio zibethinus Duzib205G1955 NW_019168381.1 - View
Durio zibethinus Duzib138G0714 NW_019167893.1 - View
Durio zibethinus Duzib068G0507 NW_019167838.1 - View
Durio zibethinus Duzib084G1325 NW_019167827.1 - View
Durio zibethinus Duzib133G1382 NW_019167938.1 - View
Erigeron canadensis ECA246G4143 Conyza_canadensis_scaffold:8 + View
Eucalyptus grandis Eucgr.E00641 Chr05 - View
Eucalyptus grandis Eucgr.D02311 Chr04 - View
Erythranthe guttata Migut.A00749 scaffold_1 - View
Eutrema salsugineum Thhalv10023722m.g PTHR14155:SF102 - RING ZINC FINGER-CONTAINING PROTEIN scaffold_8 + View
Eutrema salsugineum Thhalv10029432m.g PTHR14155 - RING FINGER DOMAIN-CONTAINING scaffold_3 + View
Fragaria x ananassa FAN13G1428 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Fvb5-2 - View
Fragaria x ananassa FAN10G4110 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Fvb7-1 - View
Fragaria x ananassa FAN01G2916 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Fvb7-4 + View
Fragaria x ananassa FAN06G4572 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Fvb7-2 - View
Fragaria x ananassa FAN04G2456 KOG1493 - Anaphase-promoting complex (APC), subunit 11 Fvb5-4 - View
Fragaria x ananassa FAN06G2748 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Fvb7-2 - View
Fragaria x ananassa FAN10G2439 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Fvb7-1 - View
Fragaria x ananassa FAN18G0256 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Fvb5-1 - View
Fragaria x ananassa FAN03G3250 KOG1493 - Anaphase-promoting complex (APC), subunit 11 Fvb7-3 + View
Fragaria x ananassa FAN08G3070 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Fvb5-3 + View
Fragaria vesca FvH4_7g14900 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Fvb7 - View
Fragaria vesca FvH4_5g02880 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Fvb5 - View
Gossypium hirsutum Gohir.A11G090800 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) A11 - View
Gossypium hirsutum Gohir.D08G136400 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) D08 + View
Gossypium hirsutum Gohir.A12G108101 PTHR14155:SF110 - RING/U-BOX DOMAIN-CONTAINING PROTEIN A12 + View
Gossypium hirsutum Gohir.D11G095400 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) D11 - View
Gossypium hirsutum Gohir.D08G153400 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) D08 - View
Gossypium hirsutum Gohir.A07G141300 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) A07 + View
Gossypium hirsutum Gohir.A08G132000 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) A08 - View
Gossypium hirsutum Gohir.D07G146800 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) D07 + View
Gossypium hirsutum Gohir.D12G111300 PTHR14155:SF110 - RING/U-BOX DOMAIN-CONTAINING PROTEIN D12 + View
Glycine max Glyma.01G221300 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Gm01 - View
Glycine max Glyma.18G235600 PTHR14155:SF175 - E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATED Gm18 - View
Glycine max Glyma.07G068000 PTHR14155:SF102 - RING ZINC FINGER-CONTAINING PROTEIN Gm07 + View
Glycine max Glyma.05G210000 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Gm05 - View
Glycine max Glyma.16G034100 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Gm16 + View
Glycine max Glyma.08G016700 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Gm08 - View
Glycine max Glyma.09G256800 PTHR14155//PTHR14155:SF2 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL60 Gm09 + View
Glycine max Glyma.11G022400 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Gm11 + View
Gossypium raimondii Gorai.001G159300 Chr01 + View
Gossypium raimondii Gorai.004G159300 Chr04 - View
Gossypium raimondii Gorai.003G156500 Chr03 + View
Gossypium raimondii Gorai.004G139600 Chr04 + View
Gossypium raimondii Gorai.008G120600 Chr08 + View
Gossypium raimondii Gorai.007G101700 Chr07 - View
Lupinus albus Lalb_Chr16g0390191 PTHR14155//PTHR14155:SF102 - RING FINGER DOMAIN-CONTAINING // RING ZINC FINGER-CONTAINING PROTEIN Lalb_Chr16 - View
Lupinus albus Lalb_Chr10g0096791 PTHR14155//PTHR14155:SF2 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL60 Lalb_Chr10 + View
Lupinus albus Lalb_Chr17g0339391 PTHR14155//PTHR14155:SF175 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATED Lalb_Chr17 + View
Lupinus albus Lalb_Chr05g0224601 PTHR14155//PTHR14155:SF128 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL46 Lalb_Chr05 + View
Lotus japonicus Lj3g0006599 PTHR14155:SF110 - RING/U-BOX DOMAIN-CONTAINING PROTEIN chr3 + View
Lotus japonicus Lj1g0000139 PTHR14155//PTHR14155:SF102 - RING FINGER DOMAIN-CONTAINING // RING ZINC FINGER-CONTAINING PROTEIN chr1 + View
Lotus japonicus LjContig00312_ERROPOS870357g0004889 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) Contig00312_ERROPOS870357 + View
Lotus japonicus Lj4g0015445 K16281 - RING-H2 zinc finger protein RHA1 (RHA1) chr4 + View
Lonicera japonica Lj7P509T71 GWHAAZE00000007 + View
Lonicera japonica Lj8C217T6 GWHAAZE00000008 + View
Lonicera japonica Lj2P181T14 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_3_6040 Lsat_1_v8_lg_3 - View
Malus domestica MD01G1067800 brassinosteroid-responsive RING-H2 Chr01 - View
Malus domestica MD14G1109400 brassinosteroid-responsive RING-H2 Chr14 - View
Malus domestica MD06G1088300 brassinosteroid-responsive RING-H2 Chr06 - View
Malus domestica MD07G1133100 brassinosteroid-responsive RING-H2 Chr07 + View
Manihot esculenta Manes.01G058900 Chromosome01 + View
Manihot esculenta Manes.02G019100 Chromosome02 + View
Manihot esculenta Manes.05G031700 Chromosome05 + View
Manihot esculenta Manes.01G254500 Chromosome01 + View
Medicago truncatula Medtr8g028815 RING-H2 zinc finger RHA1a-like protein, putative chr8 + View
Medicago truncatula Medtr8g098770 RING-H2 zinc finger protein chr8 - View
Medicago truncatula Medtr7g078150 anaphase-promoting complex subunit 11 RING-H2 finger protein chr7 - View
Nelumbo nucifera Nn6g33328 chr6 + View
Petunia axillaris Peaxi162Scf00074g00201 RING-H2 zinc finger protein RHA1a [Morus notabilis] Peaxi162Scf00074 + View
Punica granatum PGR031G2364 NC_045127.1 - View
Punica granatum PGR031G1173 NC_045127.1 + View
Punica granatum PGR042G2471 NC_045130.1 + View
Punica granatum PGR042G3433 NC_045130.1 + View
Prunus persica Prupe.5G104300 KOG1493 - Anaphase-promoting complex (APC), subunit 11 Pp05 - View
Prunus persica Prupe.2G174100 PTHR14155:SF175 - E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATED Pp02 - View
Populus trichocarpa Potri.002G161900 PTHR14155:SF175 - E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATED Chr02 - View
Populus trichocarpa Potri.014G087700 PTHR14155:SF110 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Chr14 - View
Populus trichocarpa Potri.001G101000 PTHR14155:SF175 - E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATED Chr01 + View
Populus trichocarpa Potri.003G130900 PTHR14155:SF175 - E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATED Chr03 - View
Phaseolus vulgaris Phvul.010G101100 PTHR14155:SF110 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Chr10 - View
Phaseolus vulgaris Phvul.002G158800 PTHR14155 - RING FINGER DOMAIN-CONTAINING Chr02 - View
Phaseolus vulgaris Phvul.008G060300 PTHR14155 - RING FINGER DOMAIN-CONTAINING Chr08 + View
Phaseolus vulgaris Phvul.002G291800 PTHR14155:SF175 - E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATED Chr02 - View
Quercus lobata QL12p032331 12 + View
Quercus lobata QL04p054226 4 - View
Rosa chinensis RcHm_v2.0_Chr7g0197001 RcHm_v2.0_Chr7 + View
Rosa chinensis RcHm_v2.0_Chr1g0356851 RcHm_v2.0_Chr1 - View
Rhododendron simsii Rhsim02G0234300 chr02 - View
Rhododendron simsii Rhsim07G0012800 chr07 + View
Salix brachista Sabra01G0076000 GWHAAZH00000001 + View
Salix brachista Sabra02G0128900 GWHAAZH00000002 - View
Salix brachista Sabra14G0063600 GWHAAZH00000014 - View
Salix brachista Sabra03G0093000 GWHAAZH00000003 - View
Simmondsia chinensis Sc23g0002740 GWHAASQ00000023 + View
Simmondsia chinensis Sc01g0009720 GWHAASQ00000001 - View
Sechium edule Sed0013813 LG12 - View
Sechium edule Sed0015424 LG09 + View
Solanum lycopersicum Solyc08g081370.1 RING/U-box superfamily protein (AHRD V3.3 *** Q3EAE6_ARATH) SL4.0ch08 - View
Schrenkiella parvula Sp6g00370 PTHR14155//PTHR14155:SF120 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED ch6-1 + View
Schrenkiella parvula Sp5g01940 PTHR14155:SF110 - RING/U-BOX DOMAIN-CONTAINING PROTEIN ch5-1 + View
Schrenkiella parvula Sp2g00850 PTHR14155:SF175 - E3 UBIQUITIN-PROTEIN LIGASE RHA2B-RELATED ch2-1 + View
Solanum pennellii Sopen08g029690 Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | brassinosteroid-responsive RING-H2 (BRH1) | FUNCTIONS IN: zinc ion binding | INVOLVED IN: response to brassinosteroid stimulus, response to chitin | LOCATED IN: endomembrane system | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch08 - View
Solanum tuberosum PGSC0003DMG401012192 Zinc finger protein ST4.03ch08 - View
Trochodendron aralioides TAR636G0892 group1 + View
Trochodendron aralioides TAR629G1541 group0 - View
Theobroma cacao Thecc.01G355800 Zinc finger protein Chromosome_1 + View
Theobroma cacao Thecc.03G283100 RING-H2 zinc finger protein RHA1a Chromosome_3 - View
Tarenaya hassleriana THA.LOC104809373 E3 ubiquitin-protein ligase RHA1B-like NW_010965019.1 + View
Tarenaya hassleriana THA.LOC104802042 E3 ubiquitin-protein ligase RHA1B NW_010970490.1 - View
Tarenaya hassleriana THA.LOC104817307 E3 ubiquitin-protein ligase RHA1B-like NW_010965946.1 - View
Trifolium pratense TPR.G37842 Tp57577_TGAC_v2_LG6 + View
Trifolium pratense TPR.G12766 Tp57577_TGAC_v2_LG3 - View
Tripterygium wilfordii TWI81G0315 NC_052251.1 - View
Tripterygium wilfordii TWI59G1231 NC_052248.1 - View
Vaccinium macrocarpon vmacro13257 Similar to RHA1B: E3 ubiquitin-protein ligase RHA1B (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0331G0235 CM024078.1 + View
Vigna mungo VMungo1215G3080 CM024074.1 + View
Vigna mungo VMungo1383G1986 CM024070.1 + View