Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G10500 LG-10 + View
Acer truncatum Atru.chr12.439 chr12 - View
Arabidopsis lyrata AL5G36610 scaffold_5 + View
Aquilegia oxysepala Aqoxy2G02150 CHR02 - View
Arabidopsis thaliana AT3G55460 SC35-like splicing factor 30 encodes an SC35-like splicing factor that is localized to nuclear specks. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. SC35-like splicing factor 30 (SCL30)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: response to oxidative stress%2C nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1)%3B Has 999798 Blast hits to 999477 proteins in 36048 species: Archae - 21842%3B Bacteria - 604317%3B Metazoa - 201442%3B Fungi - 24075%3B Plants - 55248%3B Viruses - 69771%3B Other Eukaryotes - 23103 (source: NCBI BLink). Chr3 + View
Amborella trichopoda ATR0559G204 AmTr_v1.0_scaffold00012 - View
Brassica carinata BcaC02g09759 ChrC02 + View
Brassica carinata BcaB02g08419 ChrB02 - View
Brassica carinata BcaB01g00098 ChrB01 - View
Brassica napus A04p04470 A04 - View
Brassica napus C04p36890 C04 - View
Brassica rapa BraA04t16158Z A04 - View
Beta vulgaris EL10Ac2g04740 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Chr2_EL10_PGA_scaffold6 - View
Cicer arietinum L. Ca_05894_v3 Ca_LG2_v3 - View
Corylus avellana Haze_17074 Similar to SCL30: Serine/arginine-rich SC35-like splicing factor SCL30 (Arabidopsis thaliana OX%3D3702) 11 + View
Coffea canephora Cc02_g07770 Putative uncharacterized protein chr2 - View
Citrus clementina Ciclev10032342m.g scaffold_4 + View
Ceratophyllum demersum CDE02G1118 1 + View
Carpinus fangiana Cfa001468 Cfa01 - View
Cardamine hirsuta CARHR165480 Serine/arginine rich splicing factor, putative Chr5 + View
Carya illinoinensis CiPaw.01G288100 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Chr01 + View
Carya illinoinensis CiPaw.02G184600 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Chr02 + View
Citrullus lanatus ClCG07G003240 Serine/arginine rich splicing factor, putative CG_Chr07 - View
Cucumis melo MELO3C023845.2 serine/arginine-rich SC35-like splicing factor SCL30 chr10 - View
Carica papaya Cpa.g.sc1.413 supercontig_1 + View
Chenopodium quinoa AUR62039371 SCL30: Serine/arginine-rich SC35-like splicing factor SCL30 C_Quinoa_Scaffold_4317 - View
Chenopodium quinoa AUR62012095 SCL30A: Serine/arginine-rich SC35-like splicing factor SCL30A C_Quinoa_Scaffold_1995 + View
Capsella rubella Carub.0005s2218 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED scaffold_5 + View
Daucus carota DCAR_011710 hypothetical protein DCARv2_Chr3 - View
Davidia involucrata Dinv26023 GWHABJS00000009 - View
Durio zibethinus Duzib114G0871 NW_019167926.1 - View
Eutrema salsugineum Thhalv10010627m.g PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED scaffold_16 - View
Fragaria vesca FvH4_7g22601 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Fvb7 + View
Gossypium hirsutum Gohir.A10G220000 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED A10 + View
Gossypium hirsutum Gohir.A06G167300 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED A06 - View
Gossypium hirsutum Gohir.D06G172700 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED D06 - View
Gossypium hirsutum Gohir.D10G229500 KOG0107//KOG0114 - Alternative splicing factor SRp20/9G8 (RRM superfamily) // Predicted RNA-binding protein (RRM superfamily) D10 + View
Glycine max Glyma.02G247800 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Gm02 + View
Glycine max Glyma.14G068500 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Gm14 - View
Gossypium raimondii Gorai.010G201600 Chr10 - View
Gossypium raimondii Gorai.011G262000 Chr11 + View
Lupinus albus Lalb_Chr10g0104541 K12900 - FUS-interacting serine-arginine-rich protein 1 (FUSIP1) Lalb_Chr10 + View
Lupinus albus Lalb_Chr04g0251241 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Lalb_Chr04 - View
Lupinus albus Lalb_Chr17g0346201 K12900 - FUS-interacting serine-arginine-rich protein 1 (FUSIP1) Lalb_Chr17 + View
Lonicera japonica Lj1A939G60 GWHAAZE00000001 + View
Lonicera japonica Lj8C83T18 GWHAAZE00000008 - View
Lactuca sativa Lsat_1_v5_gn_2_119240 Lsat_1_v8_lg_2 - View
Magnolia biondii MBI05_g22024_MAGBIO AED:0.24 Chr05 - View
Malus domestica MD01G1135000 SC35-like splicing factor 30 Chr01 + View
Malus domestica MD07G1199700 SC35-like splicing factor 30 Chr07 + View
Manihot esculenta Manes.10G029600 Chromosome10 - View
Manihot esculenta Manes.07G116804 Chromosome07 + View
Nelumbo nucifera Nn2g13353 chr2 - View
Nelumbo nucifera Nn2g11117 chr2 - View
Oryza sativa ssp. japonica Os12g0572300 Similar to Pre-mRNA splicing factor (Fragment). chr12 - View
Punica granatum PGR044G0210 NC_045134.1 + View
Prunus persica Prupe.2G236400 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Pp02 + View
Papaver somniferum PSO151G0147 NW_020650971.1 - View
Populus trichocarpa Potri.008G056600 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Chr08 + View
Populus trichocarpa Potri.010G203200 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED Chr10 - View
Quercus lobata QL08p059648 8 - View
Rosa chinensis RcHm_v2.0_Chr1g0367721 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim03G0130000 chr03 - View
Rhododendron simsii Rhsim09G0166300 chr09 - View
Simmondsia chinensis Sc10g0001630 GWHAASQ00000010 + View
Sechium edule Sed0013318 LG07 - View
Schrenkiella parvula Sp5g07010 PTHR23147//PTHR23147:SF13 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED ch5-1 - View
Selenicereus undatus Hund13768 Scaffold_33679 + View
Trochodendron aralioides TAR633G1370 group2 - View
Trochodendron aralioides TAR636G1482 group1 + View
Trochodendron aralioides TAR369G1016 group18 - View
Theobroma cacao Thecc.10G040700 SC35-like splicing factor 30 Chromosome_10 - View
Tarenaya hassleriana THA.LOC104810033 serine/arginine-rich SC35-like splicing factor SCL30 isoform X1 NW_010965122.1 + View
Tarenaya hassleriana THA.LOC104807945 serine/arginine-rich SC35-like splicing factor SCL30 NW_010960187.1 + View
Tripterygium wilfordii TWI38G1186 NC_052252.1 + View
Tripterygium wilfordii TWI63G0311 NC_052240.1 + View
Vaccinium macrocarpon vmacro10229 Protein of unknown function chr8_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro07176 Protein of unknown function chr2_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0647G0607 CM024073.1 + View
Vitis vinifera GSVIVG01016562001 chr13 - View
Zea mays Zm00001eb336060 Zm00001e139584 8 - View