Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0005488 SER/ARG-rich protein 34A [Theobroma cacao] Contig1146 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G17970 LG-4 + View
Acer truncatum Atru.chr12.2409 chr12 + View
Actinidia chinensis Actinidia28280 Lachesis_group21 - View
Actinidia chinensis Actinidia08693 Lachesis_group6 - View
Arabidopsis lyrata AL5G29180 scaffold_5 + View
Avicennia marina MSTRG.33 ScioBoG_102831_HRSCAF_103044 - View
Avicennia marina MSTRG.8543 ScioBoG_102841_HRSCAF_103114 + View
Amaranthus hybridus Ah.07g204790 Serine/arginine-rich splicing factor SR34A (At-SR34A) (At-SRp34A) (AtSR34A) (SER/ARG-rich protein 34A) AmaHy_arrow1_Scaffold_7 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.N2B8GP K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) arahy.Tifrunner.gnm1.Arahy.10 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.5ADX0Q PF06495 - Fruit fly transformer protein (Transformer) arahy.Tifrunner.gnm1.Arahy.20 - View
Arabidopsis thaliana AT3G49430 SER/ARG-rich protein 34A Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. SER/ARG-rich protein 34A (SRp34a)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: RNA splicing%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.2)%3B Has 322 Blast hits to 306 proteins in 73 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 1%3B Fungi - 75%3B Plants - 216%3B Viruses - 3%3B Other Eukaryotes - 18 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC01g02407 ChrC01 + View
Brassica carinata BcaB02g09589 ChrB02 + View
Brassica napus A06p28210 A06 + View
Brassica napus C08p24460 C08 + View
Brassica napus C03p65600 C03 - View
Brassica napus A06p18320 A06 - View
Brassica oleracea BolC3t18813H C3 - View
Brassica oleracea BolC8t50064H C8 + View
Brassica rapa BraA06t24915Z A06 - View
Brassica rapa BraA06t25763Z A06 + View
Beta vulgaris EL10Ac3g05187 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Chr3_EL10_PGA_scaffold7 - View
Beta vulgaris EL10Ac1g00189 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Chr1_EL10_PGA_scaffold3 - View
Cannabis sativa CANSAT21G0820 NC_044374.1 - View
Corylus avellana Haze_00286 Similar to SR34A: Serine/arginine-rich splicing factor SR34A (Arabidopsis thaliana OX%3D3702) 1 + View
Coffea canephora Cc02_g00870 Pre-mRNA-splicing factor SF2 chr2 - View
Citrus clementina Ciclev10021646m.g scaffold_3 + View
Cardamine hirsuta CARHR158390 Arginine/serine-rich splicing factor, putative Chr5 + View
Citrullus lanatus ClCG01G000100 Arginine/serine-rich splicing factor, putative CG_Chr01 - View
Cucumis melo MELO3C033837.2 serine/arginine-rich splicing factor SR34A chr09 - View
Corchorus olitorius COL.COLO4_14363 hypothetical protein AWUE01015415.1 + View
Chenopodium quinoa AUR62035615 SR34A: Serine/arginine-rich splicing factor SR34A C_Quinoa_Scaffold_2193 + View
Chenopodium quinoa AUR62006011 SR34A: Serine/arginine-rich splicing factor SR34A C_Quinoa_Scaffold_1001 - View
Chenopodium quinoa AUR62004558 SR30: Serine/arginine-rich splicing factor SR30 C_Quinoa_Scaffold_4250 + View
Cucumis sativus L. CsaV3_5G000070 Arginine/serine-rich splicing factor, putative chr5 + View
Daucus carota DCAR_014562 hypothetical protein DCARv2_Chr4 - View
Daucus carota DCAR_020367 hypothetical protein DCARv2_Chr6 - View
Daucus carota DCAR_008980 hypothetical protein DCARv2_Chr3 + View
Davidia involucrata Dinv35379 GWHABJS00000009 - View
Durio zibethinus Duzib084G1343 NW_019167827.1 - View
Erigeron canadensis ECA232G0007 Conyza_canadensis_scaffold:2 + View
Eucalyptus grandis Eucgr.A01412 Chr01 + View
Eutrema salsugineum Thhalv10010586m.g PTHR24012:SF442 - SERINE/ARGININE-RICH SPLICING FACTOR 4 scaffold_16 - View
Fragaria x ananassa FAN03G2828 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Fvb7-3 - View
Fragaria x ananassa FAN10G1183 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Fvb7-1 + View
Fragaria x ananassa FAN01G0064 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Fvb7-4 - View
Fragaria x ananassa FAN10G2582 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Fvb7-1 + View
Fragaria vesca FvH4_7g32850 PTHR24012//PTHR24012:SF442 - FAMILY NOT NAMED // SERINE/ARGININE-RICH SPLICING FACTOR 4 Fvb7 + View
Gossypium hirsutum Gohir.A11G016400 PTHR23147//PTHR23147:SF1//PTHR24012//PTHR24012:SF442 - SERINE/ARGININE RICH SPLICING FACTOR // SUBFAMILY NOT NAMED // FAMILY NOT NAMED // SERINE/ARGININE-RICH SPLICING FACTOR 4 A11 + View
Gossypium hirsutum Gohir.D11G016200 PTHR24012//PTHR24012:SF442 - FAMILY NOT NAMED // SERINE/ARGININE-RICH SPLICING FACTOR 4 D11 + View
Gossypium hirsutum Gohir.A09G186500 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) A09 + View
Gossypium hirsutum Gohir.D09G181400 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) D09 + View
Glycine max Glyma.04G229300 PTHR24012:SF442 - SERINE/ARGININE-RICH SPLICING FACTOR 4 Gm04 + View
Glycine max Glyma.06G135500 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Gm06 - View
Gossypium raimondii Gorai.007G017000 Chr07 + View
Gossypium raimondii Gorai.006G203400 Chr06 + View
Hydrangea macrophylla Hma1.2p1_0415F.1_g148150 Hma1.2p1_0415F.1 + View
Lupinus albus Lalb_Chr08g0239721 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Lalb_Chr08 + View
Lupinus albus Lalb_Chr23g0271901 PTHR24012//PTHR24012:SF442 - FAMILY NOT NAMED // SERINE/ARGININE-RICH SPLICING FACTOR 4 Lalb_Chr23 - View
Lotus japonicus Lj1g0006120 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) chr1 + View
Lonicera japonica Lj3C896T8 GWHAAZE00000003 - View
Lactuca sativa Lsat_1_v5_gn_9_50101 Lsat_1_v8_lg_9 - View
Malus domestica MD01G1227800 SER/ARG-rich protein 34A Chr01 + View
Malus domestica MD07G1298400 SER/ARG-rich protein 34A Chr07 + View
Manihot esculenta Manes.01G042800 Chromosome01 + View
Medicago truncatula Medtr3g092580 pre-mRNA-splicing factor SF2-like protein chr3 - View
Nelumbo nucifera Nn3g18869 chr3 - View
Nicotiana tabacum Nitab4.5_0000319g0180 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0000319 - View
Olea europaea Oeu048340.1 chr1 + View
Olea europaea Oeu023684.3 chr1 + View
Olea europaea Oeu055385.2 chr12 + View
Punica granatum PGR042G1124 NC_045130.1 - View
Prunus persica Prupe.2G318200 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Pp02 + View
Pisum sativum Psat5g072520 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr5LG3 + View
Papaver somniferum PSO063G0079 NC_039364.1 + View
Papaver somniferum PSO782G3403 NC_039365.1 - View
Populus trichocarpa Potri.012G021800 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Chr12 - View
Populus trichocarpa Potri.015G004600 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Chr15 + View
Phaseolus vulgaris Phvul.009G046000 Chr09 + View
Quercus lobata QL09p007253 9 - View
Rosa chinensis RcHm_v2.0_Chr1g0382791 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim09G0209400 chr09 + View
Striga asiatica SGA_v2.0_scaffold141G35559 scaffold141 - View
Salix brachista Sabra12G0011900 GWHAAZH00000012 + View
Simmondsia chinensis Sc13g0010230 GWHAASQ00000013 + View
Sechium edule Sed0010001 LG05 - View
Sechium edule Sed0009132 LG01 - View
Solanum lycopersicum Solyc03g082380.4 Serine/arginine-rich-splicing factor SR34A (AHRD V3.3 *** A0A0M8KRL2_NICAT) SL4.0ch03 - View
Solanum pennellii Sopen03g022110 SER/ARG-rich protein 34A (SRp34a) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: RNA splicing | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein . Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG400003218 Pre-mRNA splicing factor ST4.03ch03 + View
Trochodendron aralioides TAR374G1589 group12 + View
Theobroma cacao Thecc.03G207800 Chromosome_3 + View
Tarenaya hassleriana THA.LOC104798982 serine/arginine-rich splicing factor SR34A NW_010968505.1 + View
Tripterygium wilfordii TWI14G0199 NC_052249.1 + View
Tripterygium wilfordii TWI39G0553 NC_052250.1 - View
Vaccinium macrocarpon vmacro10155 Similar to SR34A: Serine/arginine-rich splicing factor SR34A (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1309G1655 CM024072.1 + View
Vitis vinifera GSVIVG01038636001 chr16 - View