Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G6240 LG-7 + View
Acer truncatum Atru.chr13.1169 chr13 - View
Actinidia chinensis Actinidia30784 Lachesis_group28 - View
Actinidia chinensis Actinidia10332 Lachesis_group26 - View
Arabidopsis lyrata AL2G38610 scaffold_2 + View
Arabidopsis lyrata AL1G35780 scaffold_1 + View
Avicennia marina MSTRG.22162 ScioBoG_3008_HRSCAF_3015 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.W123UN arahy.Tifrunner.gnm1.Arahy.17 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.A9UZA5 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) arahy.Tifrunner.gnm1.Arahy.08 + View
Arabidopsis thaliana AT1G22330 RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G78260.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G78260 RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G22330.1)%3B Has 19754 Blast hits to 15639 proteins in 805 species: Archae - 2%3B Bacteria - 1288%3B Metazoa - 9939%3B Fungi - 2340%3B Plants - 4423%3B Viruses - 0%3B Other Eukaryotes - 1762 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB02g07162 ChrB02 + View
Brassica carinata BcaC06g34951 ChrC06 + View
Brassica carinata BcaB07g32251 ChrB07 + View
Brassica carinata BcaB03g16000 ChrB03 + View
Brassica carinata BcaC08g47403 ChrC08 + View
Brassica carinata BcaB03g14216 ChrB03 - View
Brassica carinata BcaC05g26157 ChrC05 + View
Brassica napus C05p21430 C05 + View
Brassica napus C07p21410 C07 - View
Brassica napus A09p42440 A09 - View
Brassica napus A07p43550 A07 + View
Brassica napus C06p52220 C06 + View
Brassica napus A07p14530 A07 - View
Brassica oleracea BolC6t40244H C6 + View
Brassica oleracea BolC5t30839H C5 + View
Brassica oleracea BolC7t42668H C7 - View
Brassica rapa BraA07t31867Z A07 + View
Brassica rapa BraA09t39721Z A09 - View
Beta vulgaris EL10Ac1g01193 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Chr1_EL10_PGA_scaffold3 - View
Coffea canephora Cc10_g07060 RNA-binding (RRM/RBD/RNP motifs) family protein chr10 - View
Cardamine hirsuta CARHR022700 RNA-binding protein Chr1 + View
Cardamine hirsuta CARHR071710 RNA-binding protein Chr2 + View
Carya illinoinensis CiPaw.08G046300 KOG4207 - Predicted splicing factor, SR protein superfamily Chr08 + View
Carya illinoinensis CiPaw.07G178600 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Chr07 - View
Citrullus lanatus ClCG08G011170 RNA-binding protein CG_Chr08 + View
Cucumis melo MELO3C003568.2 RNA-binding protein 24 chr04 - View
Cucumis melo MELO3C011033.2 RNA-binding protein 38-like chr03 - View
Carica papaya Cpa.g.sc36.147 supercontig_36 + View
Chenopodium quinoa AUR62018936 ARP1: Probable RNA-binding protein ARP1 C_Quinoa_Scaffold_3876 + View
Capsella rubella Carub.0002s2516 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) scaffold_2 + View
Capsella rubella Carub.0001s2187 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) scaffold_1 + View
Cucumis sativus L. CsaV3_3G047560 RNA-binding protein chr3 + View
Cucumis sativus L. CsaV3_2G029740 RNA-binding protein 38-like chr2 + View
Davidia involucrata Dinv14341 GWHABJS00000011 + View
Davidia involucrata Dinv44786 GWHABJS00000002 + View
Durio zibethinus Duzib041G0154 NW_019167826.1 - View
Durio zibethinus Duzib093G1504 NW_019167937.1 + View
Eucalyptus grandis Eucgr.B00029 Chr06 - View
Erythranthe guttata Migut.N02888 scaffold_14 + View
Eutrema salsugineum Thhalv10018959m.g KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) scaffold_9 - View
Eutrema salsugineum Thhalv10008357m.g KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) scaffold_5 - View
Fragaria x ananassa FAN08G3560 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Fvb5-3 + View
Fragaria x ananassa FAN18G0738 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Fvb5-1 - View
Fragaria x ananassa FAN04G2328 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Fvb5-4 - View
Fragaria x ananassa FAN13G2127 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Fvb5-2 - View
Fragaria vesca FvH4_5g37060 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Fvb5 - View
Gossypium hirsutum Gohir.A05G225400 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) A05 - View
Gossypium hirsutum Gohir.A06G035100 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) A06 - View
Gossypium hirsutum Gohir.A05G266300 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) A05 - View
Gossypium hirsutum Gohir.D05G268200 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) D05 - View
Gossypium hirsutum Gohir.D05G228100 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) D05 - View
Gossypium hirsutum Gohir.D06G035700 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) D06 - View
Glycine max Glyma.06G102400 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Gm06 - View
Glycine max Glyma.13G089800 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Gm13 + View
Glycine max Glyma.04G100600 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Gm04 - View
Glycine max Glyma.14G174600 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Gm14 + View
Gossypium raimondii Gorai.010G039700 Chr10 - View
Gossypium raimondii Gorai.009G280600 Chr09 - View
Lupinus albus Lalb_Chr10g0102451 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Lalb_Chr10 + View
Lupinus albus Lalb_Chr17g0344201 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Lalb_Chr17 + View
Lupinus albus Lalb_Chr04g0253121 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Lalb_Chr04 - View
Lotus japonicus Lj1g0018841 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) chr1 + View
Lonicera japonica Lj4A101G73 GWHAAZE00000004 - View
Lactuca sativa Lsat_1_v5_gn_6_104561 Lsat_1_v8_lg_6 + View
Magnolia biondii MBI02_g27286_MAGBIO AED:0.14 Chr02 + View
Malus domestica MD08G1184900 RNA-binding (RRM/RBD/RNP motifs) family protein Chr08 + View
Manihot esculenta Manes.02G151600 Chromosome02 - View
Manihot esculenta Manes.18G066101 Chromosome18 - View
Nelumbo nucifera Nn5g30070 chr5 - View
Nelumbo nucifera Nn1g05389 chr1 + View
Oryza sativa ssp. japonica Os02g0755400 Similar to RNA recognition motif-containing protein SEB-4. chr02 + View
Oryza sativa ssp. japonica Os06g0220600 RNA recognition motif domain domain containing protein. chr06 - View
Petunia axillaris Peaxi162Scf00160g01335 Peaxi162Scf00160 - View
Phaseolus vulgaris Phvul.009G032000 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Chr09 + View
Phaseolus vulgaris Phvul.008G174100 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) Chr08 + View
Rhododendron simsii Rhsim06G0080400 chr06 - View
Salvia bowleyana SalBow7G2627 GWHASIU00000005 - View
Salix brachista Sabra02G0077200 GWHAAZH00000002 + View
Sechium edule Sed0008673 LG04 + View
Solanum lycopersicum Solyc04g074310.4 RNA-binding protein 38-like (AHRD V3.3 *** A0A2I4HAQ4_9ROSI) SL4.0ch04 + View
Schrenkiella parvula Sp5g33390 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) ch5-7 + View
Schrenkiella parvula Sp1g19820 KOG0149 - Predicted RNA-binding protein SEB4 (RRM superfamily) ch1-1 + View
Selenicereus undatus Hund26970 Scaffold_2055 + View
Trochodendron aralioides TAR381G1543 group11 - View
Theobroma cacao Thecc.08G105100 Chromosome_8 - View
Theobroma cacao Thecc.08G099600 RNA-binding family protein Chromosome_8 + View
Tarenaya hassleriana THA.LOC104810730 RNA-binding protein 24 NW_010960187.1 - View
Tripterygium wilfordii TWI56G0943 NC_052242.1 + View
Vaccinium macrocarpon vmacro21260 Similar to ARP1: Probable RNA-binding protein ARP1 (Arabidopsis thaliana OX%3D3702) chr10_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0647G0936 CM024073.1 - View
Vanilla planifolia HPP92_016356 RNA-binding protein 24 *-* CM028157.1 + View
Vanilla planifolia HPP92_004283 RNA-binding protein 38 *** CM028150.1 - View
Vitis vinifera GSVIVG01009045001 chr18 + View
Zea mays Zm00001eb255370 Zm00001e015892 Probable RNA-binding protein ARP1 5 + View
Zea mays Zm00001eb194100 Zm00001e023856 Probable RNA-binding protein ARP1 4 - View