Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0042163 PREDICTED: serine/arginine-rich splicing factor RS31 isoform X2 [Vitis vinifera] Chr3 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G28000 LG-1 - View
Aethionema arabicum Aa31LG10G15830 LG-10 - View
Acer truncatum Atru.chr5.719 chr5 - View
Actinidia chinensis Actinidia07983 Lachesis_group0 - View
Actinidia chinensis Actinidia20262 Lachesis_group6 - View
Arabidopsis lyrata AL4G46040 scaffold_4 - View
Arabidopsis lyrata AL5G44440 scaffold_5 - View
Avicennia marina MSTRG.20914 ScioBoG_26180_HRSCAF_26306 - View
Avicennia marina MSTRG.28275 ScioBoG_94932_HRSCAF_95134 - View
Amaranthus hybridus Ah.05g179270 Serine/arginine-rich splicing factor RS31 (At-RSp31) (AtRS31) AmaHy_arrow1_Scaffold_5 + View
Aquilegia oxysepala Aqoxy7G00037 CHR07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.9ADW36 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.11BQ2X K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) arahy.Tifrunner.gnm1.Arahy.16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.0F9H7B K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) arahy.Tifrunner.gnm1.Arahy.12 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.HB5M7L K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) arahy.Tifrunner.gnm1.Arahy.08 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.6E7TBQ KOG0106 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) arahy.Tifrunner.gnm1.Arahy.02 - View
Arabidopsis thaliana AT2G46610 RNA-binding (RRM/RBD/RNP motifs) family protein Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G61860.1)%3B Has 503542 Blast hits to 501535 proteins in 22149 species: Archae - 10994%3B Bacteria - 307576%3B Metazoa - 94329%3B Fungi - 13527%3B Plants - 29141%3B Viruses - 36248%3B Other Eukaryotes - 11727 (source: NCBI BLink). Chr2 - View
Arabidopsis thaliana AT3G61860 RNA-binding (RRM/RBD/RNP motifs) family protein encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. RSP31%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G46610.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaC02g12664 ChrC02 + View
Brassica carinata BcaC07g42599 ChrC07 - View
Brassica napus A03p25740 A03 - View
Brassica rapa BraA05t19119Z A05 + View
Beta vulgaris EL10Ac1g00226 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Chr1_EL10_PGA_scaffold3 + View
Cannabis sativa CANSAT56G4432 NC_044371.1 + View
Cicer arietinum L. Ca_23508_v3 Ca_LG7_v3 + View
Corylus avellana Haze_15692 Similar to RS31: Serine/arginine-rich splicing factor RS31 (Arabidopsis thaliana OX%3D3702) 11 - View
Coffea canephora Cc02_g39690 Arginine/serine-rich-splicing factor RSP31 chr2 - View
Citrus clementina Ciclev10021673m.g scaffold_3 + View
Ceratophyllum demersum CDE12G0677 10 + View
Carpinus fangiana Cfa003770 Cfa01 + View
Cardamine hirsuta CARHR172190 Arginine/serine-rich splicing factor 31 Chr5 - View
Carya illinoinensis CiPaw.01G078900 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Chr01 - View
Citrullus lanatus ClCG05G000620 Arginine/serine-rich splicing factor, putative CG_Chr05 + View
Cucumis melo MELO3C006002.2 Arginine/serine-rich splicing factor, putative chr06 + View
Chenopodium quinoa AUR62022727 RS31: Serine/arginine-rich splicing factor RS31 C_Quinoa_Scaffold_1870 + View
Chenopodium quinoa AUR62004528 RS31: Serine/arginine-rich splicing factor RS31 C_Quinoa_Scaffold_4250 - View
Capsella rubella Carub.0005s2860 scaffold_5 - View
Davidia involucrata Dinv32613 GWHABJS00000020 - View
Erigeron canadensis ECA236G0763 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.E00030 Chr05 + View
Erythranthe guttata Migut.B01901 scaffold_2 - View
Eutrema salsugineum Thhalv10001540m.g K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) scaffold_22 - View
Fragaria x ananassa FAN03G1712 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Fvb7-3 + View
Fragaria x ananassa FAN01G1091 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Fvb7-4 + View
Fragaria x ananassa FAN06G3058 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Fvb7-2 - View
Fragaria x ananassa FAN06G1179 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Fvb7-2 - View
Fragaria x ananassa FAN10G2065 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Fvb7-1 - View
Fragaria x ananassa FAN10G0110 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Fvb7-1 - View
Fragaria vesca FvH4_7g17090 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Fvb7 - View
Gossypium hirsutum Gohir.A12G113900 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) A12 - View
Gossypium hirsutum Gohir.D12G117400 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) D12 - View
Glycine max Glyma.16G022300 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Gm16 + View
Glycine max Glyma.07G053200 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Gm07 + View
Gossypium raimondii Gorai.008G127200 Chr08 - View
Lupinus albus Lalb_Chr17g0342811 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Lalb_Chr17 - View
Lupinus albus Lalb_Chr04g0261411 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Lalb_Chr04 + View
Lotus japonicus Lj1g0020995 KOG0106 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) chr1 + View
Lotus japonicus Lj3g0024274 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) chr3 + View
Lonicera japonica Lj9A601T38 GWHAAZE00000009 - View
Malus domestica MD07G1154500 RNA-binding (RRM/RBD/RNP motifs) family protein Chr07 - View
Manihot esculenta Manes.01G243200 Chromosome01 + View
Medicago truncatula Medtr8g027190 RNA-binding (RRM/RBD/RNP motif) family protein chr8 + View
Nelumbo nucifera Nn3g18911 chr3 + View
Olea europaea Oeu042950.1 chr3 - View
Petunia axillaris Peaxi162Scf00345g00030 RNA-binding (RRM/RBD/RNP motifs) family protein Peaxi162Scf00345 + View
Petunia axillaris Peaxi162Scf00087g02112 RNA-binding (RRM/RBD/RNP motifs) family protein Peaxi162Scf00087 + View
Punica granatum PGR031G0776 NC_045127.1 + View
Prunus persica Prupe.2G193200 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Pp02 - View
Pisum sativum Psat4g163040 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr4LG4 - View
Populus trichocarpa Potri.014G101800 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Chr14 - View
Populus trichocarpa Potri.002G175000 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Chr02 - View
Phaseolus vulgaris Phvul.010G116100 Chr10 - View
Quercus lobata QL08p046099 8 - View
Rosa chinensis RcHm_v2.0_Chr1g0360501 RcHm_v2.0_Chr1 - View
Rhododendron simsii Rhsim01G0176100 chr01 - View
Striga asiatica SGA_v2.0_scaffold232G43540 scaffold232 + View
Salvia bowleyana SalBow5G2864 GWHASIU00000003 - View
Salix brachista Sabra02G0138600 GWHAAZH00000002 + View
Salix brachista Sabra14G0074900 GWHAAZH00000014 - View
Simmondsia chinensis Sc23g0001990 GWHAASQ00000023 + View
Sechium edule Sed0017502 LG12 + View
Sechium edule Sed0021225 LG02 - View
Solanum lycopersicum Solyc01g096180.4 Serine/arginine-rich-splicing factor RS31 (AHRD V3.3 *** A0A0M8KSL4_NICAT) SL4.0ch01 - View
Solanum lycopersicum Solyc10g009330.3 Serine/arginine-rich-splicing factor RS31 (AHRD V3.3 *** A0A0M8KRT2_NICAT) SL4.0ch10 + View
Schrenkiella parvula Sp4g28660 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) ch4-6 - View
Schrenkiella parvula Sp5g01510 PTHR24012:SF497 - TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1 ch5-1 + View
Solanum pennellii Sopen10g005120 encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. | RSP31 | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing | LOCATED IN: nuclear speck, spliceosomal complex | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch10 + View
Solanum tuberosum PGSC0003DMG400018875 Arginine/serine-rich splicing factor ST4.03ch10 + View
Selenicereus undatus Hund27172 Scaffold_2055 + View
Trochodendron aralioides TAR629G0194 group0 - View
Trochodendron aralioides TAR375G1030 group15 - View
Trochodendron aralioides TAR374G0844 group12 - View
Theobroma cacao Thecc.01G337900 RNA-binding (RRM/RBD/RNP motifs) family protein Chromosome_1 + View
Tarenaya hassleriana THA.LOC104817385 serine/arginine-rich splicing factor RS31 isoform X1 NW_010965946.1 - View
Tarenaya hassleriana THA.LOC104802085 serine/arginine-rich splicing factor RS31-like NW_010970490.1 - View
Trifolium pratense TPR.G15897 Tp57577_TGAC_v2_LG5 - View
Vaccinium macrocarpon vmacro12592 Similar to RS31: Serine/arginine-rich splicing factor RS31 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0331G0619 CM024078.1 + View
Vitis vinifera GSVIVG01027193001 chr15 + View