Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0006981 PREDICTED: transcription factor BIM1 isoform X1 [Vitis vinifera] Chr2 + View
CSS0050324 unnamed protein product [Vitis vinifera] Chr2 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G3740 LG-2 + View
Acer truncatum Atru.chr11.1550 chr11 + View
Acer truncatum Atru.chr8.617 chr8 + View
Actinidia chinensis Actinidia10438 Lachesis_group13 - View
Actinidia chinensis Actinidia26274 Lachesis_group3 - View
Actinidia chinensis Actinidia04791 Lachesis_group1 - View
Actinidia chinensis Actinidia17610 Lachesis_group21 - View
Arabidopsis lyrata AL7G51570 scaffold_7 - View
Arabidopsis lyrata AL2G28060 scaffold_2 + View
Amaranthus hybridus Ah.16g100970 AmaHy_arrow1_Scaffold_16 + View
Amaranthus hybridus Ah.10g038230 Transcription factor BIM2 (BES1-interacting Myc-like protein 2) (Basic helix-loop-helix protein 102) (AtbHLH102) (bHLH 102) (Transcription factor EN 125) (bHLH transcription factor bHLH102) AmaHy_arrow1_Scaffold_10 - View
Aquilegia oxysepala Aqoxy3G00556 CHR03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.A8XWCU PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 arahy.Tifrunner.gnm1.Arahy.14 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.3TU9DB PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.7WY41H PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 arahy.Tifrunner.gnm1.Arahy.04 + View
Arabidopsis thaliana AT1G69010 BES1-interacting Myc-like protein 2 Encodes BES1-INTERACTING MYC-LIKE 2 (BIM2)%2C a PAR1 (PHYTOCHROME RAPIDLY REGULATED 1)-interacting protein that positively modulates the shade avoidance syndrome in Arabidopsis seedlings. BES1-interacting Myc-like protein 2 (BIM2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: dTDP-rhamnose biosynthetic process%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G08130.3)%3B Has 2743 Blast hits to 2732 proteins in 181 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 222%3B Fungi - 63%3B Plants - 2453%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT5G38860 BES1-interacting Myc-like protein 3 Encodes BES1-INTERACTING MYC-LIKE 3 (BIM3)%2C a PAR1 (PHYTOCHROME RAPIDLY REGULATED 1)-interacting protein that positively modulates the shade avoidance syndrome in Arabidopsis seedlings. BES1-interacting Myc-like protein 3 (BIM3)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr5 + View
Amborella trichopoda ATR0691G058 AmTr_v1.0_scaffold00006 - View
Beta vulgaris EL10Ac2g04431 PTHR12565//PTHR12565:SF85 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM3 Chr2_EL10_PGA_scaffold6 + View
Cannabis sativa CANSAT64G0914 NC_044379.1 + View
Corylus avellana Haze_14374 Similar to BIM3: Transcription factor BIM3 (Arabidopsis thaliana OX%3D3702) 5 + View
Corylus avellana Haze_11854 Similar to BIM2: Transcription factor BIM2 (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc11_g11510 Transcription factor BIM2 chr11 + View
Coffea canephora Cc07_g04540 Putative Transcription factor BIM2 chr7 - View
Citrus clementina Ciclev10032020m.g scaffold_4 + View
Citrus clementina Ciclev10020248m.g scaffold_3 - View
Citrus clementina Ciclev10012135m.g scaffold_6 - View
Ceratophyllum demersum CDE02G4772 1 - View
Ceratophyllum demersum CDE10G0632 8 + View
Carpinus fangiana Cfa008842 Cfa03 + View
Carpinus fangiana Cfa007701 Cfa03 - View
Cardamine hirsuta CARHR263730 BHLH transcription factor Chr8 - View
Carya illinoinensis CiPaw.03G082400 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 Chr03 + View
Carya illinoinensis CiPaw.05G121000 PTHR12565//PTHR12565:SF123 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM2 Chr05 + View
Carya illinoinensis CiPaw.04G051800 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 Chr04 + View
Citrullus lanatus ClCG07G016090 Transcription factor BIM1, putative CG_Chr07 - View
Cucumis melo MELO3C002057.2 transcription factor BIM1-like isoform X2 chr12 + View
Cucumis melo MELO3C018898.2 transcription factor BIM2 isoform X3 chr07 - View
Cucumis melo MELO3C017257.2 transcription factor BIM1 chr02 + View
Carica papaya Cpa.g.sc14.241 supercontig_14 - View
Chenopodium quinoa AUR62023150 BIM2: Transcription factor BIM2 C_Quinoa_Scaffold_1189 + View
Chenopodium quinoa AUR62009472 BIM2: Transcription factor BIM2 C_Quinoa_Scaffold_3674 + View
Chenopodium quinoa AUR62003052 BIM2: Transcription factor BIM2 C_Quinoa_Scaffold_1000 - View
Capsella rubella Carub.0007s3699 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 scaffold_7 - View
Cucumis sativus L. CsaV3_1G006280 transcription factor BIM1-like isoform X2 chr1 - View
Cucumis sativus L. CsaV3_4G009990 Unknown protein chr4 + View
Daucus carota DCAR_025458 hypothetical protein DCARv2_Chr7 - View
Davidia involucrata Dinv38636 GWHABJS00000019 - View
Davidia involucrata Dinv33873 GWHABJS00000014 - View
Davidia involucrata Dinv15579 GWHABJS00000018 - View
Durio zibethinus Duzib248G1444 NW_019168048.1 - View
Durio zibethinus Duzib251G0026 NW_019167971.1 + View
Durio zibethinus Duzib211G0143 NW_019168049.1 - View
Durio zibethinus Duzib138G1912 NW_019167893.1 - View
Erigeron canadensis ECA233G2616 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA246G2033 Conyza_canadensis_scaffold:8 - View
Erigeron canadensis ECA246G3838 Conyza_canadensis_scaffold:8 + View
Eucalyptus grandis Eucgr.I02069 Chr09 + View
Eucalyptus grandis Eucgr.B03113 Chr02 + View
Erythranthe guttata Migut.E00254 scaffold_5 - View
Erythranthe guttata Migut.L01158 scaffold_12 + View
Erythranthe guttata Migut.H00581 scaffold_8 + View
Eutrema salsugineum Thhalv10027863m.g PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 scaffold_14 - View
Fragaria x ananassa FAN09G1236 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 Fvb6-2 - View
Fragaria x ananassa FAN05G4264 PF00010//PF12937 - Helix-loop-helix DNA-binding domain (HLH) // F-box-like (F-box-like) Fvb6-3 - View
Fragaria x ananassa FAN14G2506 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 Fvb6-1 - View
Fragaria x ananassa FAN02G2480 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 Fvb6-4 + View
Fragaria x ananassa FAN07G0900 PTHR12565:SF123 - TRANSCRIPTION FACTOR BIM2 Fvb4-4 - View
Fragaria vesca FvH4_4g29230 PTHR12565//PTHR12565:SF123 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM2 Fvb4 + View
Fragaria vesca FvH4_6g46290 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 Fvb6 + View
Glycine max Glyma.18G275400 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 Gm18 + View
Glycine max Glyma.02G123400 PTHR12565//PTHR12565:SF123 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM2 Gm02 - View
Lupinus albus Lalb_Chr10g0099231 PTHR12565:SF123 - TRANSCRIPTION FACTOR BIM2 Lalb_Chr10 - View
Lupinus albus Lalb_Chr17g0341501 PTHR12565:SF123 - TRANSCRIPTION FACTOR BIM2 Lalb_Chr17 - View
Lupinus albus Lalb_Chr10g0092671 PTHR12565//PTHR12565:SF85 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM3 Lalb_Chr10 - View
Lotus japonicus Lj1g0024467 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 chr1 - View
Lotus japonicus Lj4g0006918 PTHR12565//PTHR12565:SF153 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM1 chr4 + View
Lonicera japonica Lj3A1026T82 GWHAAZE00000003 + View
Lactuca sativa Lsat_1_v5_gn_3_96981 Lsat_1_v8_lg_3 + View
Lactuca sativa Lsat_1_v5_gn_5_24661 Lsat_1_v8_lg_5 - View
Lactuca sativa Lsat_1_v5_gn_8_36960 KOG2483 - Upstream transcription factor 2/L-myc-2 protein Lsat_1_v8_lg_8 - View
Malus domestica MD09G1075900 BES1-interacting Myc-like protein 2 Chr09 - View
Malus domestica MD17G1066600 BES1-interacting Myc-like protein 2 Chr17 - View
Malus domestica MD16G1055100 BES1-interacting Myc-like protein 2 Chr16 + View
Manihot esculenta Manes.01G104200 Chromosome01 - View
Manihot esculenta Manes.14G089600 Chromosome14 - View
Manihot esculenta Manes.06G079000 Chromosome06 + View
Manihot esculenta Manes.02G060100 Chromosome02 - View
Nelumbo nucifera Nn4g23548 chr4 - View
Nicotiana tabacum Nitab4.5_0000154g0110 Myc-type, basic helix-loop-helix (bHLH) domain Nitab4.5_0000154 + View
Punica granatum PGR102G1812 NC_045129.1 - View
Punica granatum PGR004G1470 NC_045131.1 + View
Punica granatum PGR083G0040 NC_045133.1 - View
Prunus persica Prupe.5G210500 Pp05 - View
Prunus persica Prupe.1G294200 Pp01 - View
Prunus persica Prupe.3G248100 PTHR12565:SF123 - TRANSCRIPTION FACTOR BIM2 Pp03 + View
Papaver somniferum PSO017G4194 NC_039362.1 - View
Papaver somniferum PSO782G2663 NC_039365.1 - View
Populus trichocarpa Potri.004G112900 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 Chr04 - View
Populus trichocarpa Potri.008G112000 PTHR12565//PTHR12565:SF123 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM2 Chr08 - View
Populus trichocarpa Potri.010G137600 PTHR12565//PTHR12565:SF123 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM2 Chr10 + View
Populus trichocarpa Potri.017G101700 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 Chr17 + View
Phaseolus vulgaris Phvul.008G025500 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 Chr08 - View
Quercus lobata QL02p065124 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr4g0437281 RcHm_v2.0_Chr4 + View
Rosa chinensis RcHm_v2.0_Chr2g0164741 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim12G0071100 chr12 + View
Rhododendron simsii Rhsim08G0077900 chr08 - View
Striga asiatica SGA_v2.0_scaffold16G07829 scaffold16 - View
Salix brachista Sabra04G0072000 GWHAAZH00000004 + View
Salix brachista Sabra10G0106100 GWHAAZH00000010 + View
Sechium edule Sed0015295 LG06 - View
Solanum lycopersicum Solyc03g046570.4 transcription factor BIM2-like isoform X1 (AHRD V3.3 *** A0A2I4GSS3_9ROSI) SL4.0ch03 + View
Solanum lycopersicum Solyc05g011810.4 bHLH transcription factor 040 SL4.0ch05 + View
Solanum lycopersicum Solyc03g114720.3 bHLH transcription factor 023 SL4.0ch03 + View
Schrenkiella parvula Sp7g03050 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 ch7-1 - View
Solanum pennellii Sopen03g033800 Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG). | BIM1 | FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain , Helix-loop-helix DNA-binding | BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 . Spenn-ch03 + View
Solanum pennellii Sopen05g006570 BES1-interacting Myc-like protein 2 (BIM2) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: dTDP-rhamnose biosynthetic process, regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain , Helix-loop-helix DNA-binding | BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein Spenn-ch05 + View
Solanum tuberosum PGSC0003DMG400019654 BHLH domain class transcription factor ST4.03ch05 - View
Solanum tuberosum PGSC0003DMG400024523 Transcription factor BIM1 ST4.03ch03 + View
Selenicereus undatus Hund25152 Scaffold_3410 + View
Selenicereus undatus Hund13666 Scaffold_33679 + View
Selenicereus undatus Hund05817 Scaffold_19641 + View
Trochodendron aralioides TAR622G0078 group8 + View
Trochodendron aralioides TAR374G1509 group12 - View
Trochodendron aralioides TAR371G0854 group13 - View
Theobroma cacao Thecc.04G107700 BES1-interacting Myc-like protein 2 Chromosome_4 - View
Theobroma cacao Thecc.02G321700 BES1-interacting Myc-like protein 2 Chromosome_2 + View
Trifolium pratense TPR.G3268 Tp57577_TGAC_v2_scaf_82 + View
Tripterygium wilfordii TWI34G1427 NC_052235.1 + View
Tripterygium wilfordii TWI32G0276 NC_052254.1 - View
Tripterygium wilfordii TWI31G0420 NC_052233.1 + View
Vaccinium macrocarpon vmacro18122 Similar to BIM2: Transcription factor BIM2 (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1383G0538 CM024070.1 - View
Vitis vinifera GSVIVG01008164001 chr17 + View
Vitis vinifera GSVIVG01036533001 chr14 + View
Zea mays Zm00001eb253350 Zm00001e015706 Transcription factor BIM3 5 - View