Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G8980 LG-1 + View
Acer truncatum Atru.chr6.2892 chr6 - View
Acer truncatum Atru.chr10.1821 chr10 - View
Actinidia chinensis Actinidia05649 Lachesis_group20 + View
Arabidopsis lyrata AL1G41910 scaffold_1 + View
Arabidopsis lyrata AL1G13320 scaffold_1 + View
Avicennia marina MSTRG.15867 ScioBoG_19538_HRSCAF_19626 - View
Avicennia marina MSTRG.7344 ScioBoG_102840_HRSCAF_103099 + View
Avicennia marina MSTRG.14708 ScioBoG_18782_HRSCAF_18867 + View
Aquilegia oxysepala Aqoxy1G02355 CHR01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.MB6W4F K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.WUDH2X K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.58YKF3 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) arahy.Tifrunner.gnm1.Arahy.18 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.IS7ZQD K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) arahy.Tifrunner.gnm1.Arahy.03 + View
Arabidopsis thaliana AT1G03770 RING 1B Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1a%2C a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. RING 1B (RING1B)%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: negative regulation of gene expression%2C epigenetic%3B LOCATED IN: nucleus%2C PRC1 complex%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING 1A (TAIR:AT5G44280.1)%3B Has 7001 Blast hits to 4383 proteins in 552 species: Archae - 10%3B Bacteria - 208%3B Metazoa - 3701%3B Fungi - 387%3B Plants - 512%3B Viruses - 317%3B Other Eukaryotes - 1866 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G28327 E3 ubiquitin-protein ligase unknown protein%3B Has 52 Blast hits to 52 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 52%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC05g24512 ChrC05 - View
Brassica napus A10p02310 A10 + View
Brassica rapa BraA10t42498Z A10 + View
Beta vulgaris EL10Ac8g20418 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) Chr8_EL10_PGA_scaffold4 - View
Corylus avellana Haze_06403 Similar to RING1A: Putative E3 ubiquitin-protein ligase RING1a (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc02_g13640 Putative E3 ubiquitin-protein ligase RING1a chr2 + View
Coffea canephora Cc05_g07510 Putative uncharacterized protein chr5 + View
Citrus clementina Ciclev10015083m.g scaffold_2 - View
Citrus clementina Ciclev10015104m.g scaffold_2 + View
Cardamine hirsuta CARHR003100 Ubiquitin-protein ligase RNF1/2 Chr1 + View
Carya illinoinensis CiPaw.03G179700 KOG4739 - Uncharacterized protein involved in synaptonemal complex formation Chr03 + View
Carya illinoinensis CiPaw.09G062200 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) Chr09 + View
Carya illinoinensis CiPaw.10G051100 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) Chr10 + View
Citrullus lanatus ClCG01G023130 E3 ubiquitin-protein ligase RING2 CG_Chr01 + View
Cucumis melo MELO3C007270.2 Ring finger protein, putative chr08 - View
Corchorus olitorius COL.COLO4_31437 Zinc finger%2C RING-type AWUE01020854.1 - View
Carica papaya Cpa.g.sc83.68 supercontig_83 + View
Chenopodium quinoa AUR62017044 RING1B: Putative E3 ubiquitin-protein ligase RING1b C_Quinoa_Scaffold_3787 - View
Chenopodium quinoa AUR62014849 RING1B: Putative E3 ubiquitin-protein ligase RING1b C_Quinoa_Scaffold_2947 - View
Capsella rubella Carub.0001s0287 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) scaffold_1 + View
Cucumis sativus L. CsaV3_6G050270 E3 ubiquitin-protein ligase RING1 chr6 + View
Daucus carota DCAR_008022 hypothetical protein DCARv2_Chr2 - View
Daucus carota DCAR_004056 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv06877 GWHABJS00000013 + View
Davidia involucrata Dinv40585 GWHABJS00000274 + View
Davidia involucrata Dinv17334 GWHABJS00000020 - View
Durio zibethinus Duzib235G0149 NW_019167982.1 - View
Durio zibethinus Duzib192G0810 NW_019168037.1 + View
Erigeron canadensis ECA236G2577 Conyza_canadensis_scaffold:3 - View
Erythranthe guttata Migut.H01477 scaffold_8 - View
Erythranthe guttata Migut.M01121 scaffold_13 - View
Eutrema salsugineum Thhalv10007494m.g K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) scaffold_5 - View
Fragaria x ananassa FAN21G2393 PTHR10825:SF43 - E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED Fvb3-2 - View
Fragaria x ananassa FAN25G1429 PTHR10825//PTHR10825:SF43 - RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT // E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED Fvb3-1 + View
Fragaria x ananassa FAN16G0075 PTHR10825:SF43 - E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED Fvb3-3 - View
Fragaria x ananassa FAN09G1859 PTHR10825:SF43 - E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED Fvb6-2 - View
Fragaria x ananassa FAN11G0885 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) Fvb3-4 + View
Fragaria vesca FvH4_3g08840 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) Fvb3 - View
Gossypium hirsutum Gohir.A06G129600 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) A06 - View
Glycine max Glyma.06G290400 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) Gm06 - View
Glycine max Glyma.12G205500 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) Gm12 + View
Glycine max Glyma.13G295300 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) Gm13 - View
Glycine max Glyma.13G177200 PTHR10825:SF5 - E3 UBIQUITIN-PROTEIN LIGASE RING1 Gm13 - View
Gossypium raimondii Gorai.010G155500 Chr10 + View
Helianthus annuus HanXRQChr04g0123781 Probable RING 1A HanXRQChr04 + View
Hydrangea macrophylla Hma1.2p1_0208F.1_g088360 Hma1.2p1_0208F.1 + View
Lupinus albus Lalb_Chr16g0383921 PTHR10825:SF5 - E3 UBIQUITIN-PROTEIN LIGASE RING1 Lalb_Chr16 + View
Lotus japonicus Lj4g0011261 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) chr4 - View
Lonicera japonica Lj8A109T80 GWHAAZE00000008 - View
Lonicera japonica Lj1A1202G61 GWHAAZE00000001 - View
Lactuca sativa Lsat_1_v5_gn_7_20960 Lsat_1_v8_lg_7 + View
Malus domestica MD05G1312000 RING 1B Chr05 - View
Malus domestica MD10G1291500 RING 1B Chr10 - View
Manihot esculenta Manes.13G145880 Chromosome13 - View
Manihot esculenta Manes.12G089000 Chromosome12 - View
Medicago truncatula Medtr2g090595 RING zinc finger protein chr2 + View
Medicago truncatula Medtr4g088520 E3 ubiquitin-protein ligase RING1a-like protein, putative chr4 - View
Nelumbo nucifera Nn1g04162 chr1 + View
Prunus persica Prupe.4G050700 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) Pp04 + View
Papaver somniferum PSO675G7421 NC_039358.1 - View
Papaver somniferum PSO832G0912 NC_039367.1 + View
Papaver somniferum PSO210G5507 NC_039359.1 - View
Populus trichocarpa Potri.004G047000 PTHR10825:SF5 - E3 UBIQUITIN-PROTEIN LIGASE RING1 Chr04 + View
Populus trichocarpa Potri.011G056300 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) Chr11 + View
Phaseolus vulgaris Phvul.005G101600 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) Chr05 - View
Phaseolus vulgaris Phvul.002G230550 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) Chr02 + View
Quercus lobata QL08p039728 8 + View
Quercus lobata QL05p041770 5 + View
Rosa chinensis RcHm_v2.0_Chr5g0008911 RcHm_v2.0_Chr5 + View
Striga asiatica SGA_v2.0_scaffold100G29702 scaffold100 + View
Salix brachista Sabra11G0038200 GWHAAZH00000011 + View
Salix brachista Sabra17G0010500 GWHAAZH00000017 + View
Salix brachista Sabra04G0029400 GWHAAZH00000004 + View
Simmondsia chinensis Sc17g0006080 GWHAASQ00000017 - View
Sechium edule Sed0003135 LG08 - View
Sechium edule Sed0014951 LG10 - View
Sechium edule Sed0010036 LG14 + View
Solanum lycopersicum Solyc07g053800.3 RING 1B (AHRD V3.3 *** F4I2H5_ARATH) SL4.0ch07 - View
Solanum lycopersicum Solyc02g077890.4 RING 1B (AHRD V3.3 *** F4I2H5_ARATH) SL4.0ch02 - View
Schrenkiella parvula Sp1g02630 K10695 - E3 ubiquitin-protein ligase RNF1/2 [EC:6.3.2.19] (RNF1_2) ch1-1 + View
Schrenkiella parvula Sp1g24550 PTHR10825//PTHR10825:SF5 - RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT // E3 UBIQUITIN-PROTEIN LIGASE RING1 ch1-1 + View
Solanum pennellii Sopen02g022740 Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression. | RING 1A (RING1A) | FUNCTIONS IN: zinc ion binding | INVOLVED IN: negative regulation of gene expression, epigenetic | LOCATED IN: nucleus, PRC1 complex | EXPRESSED IN: 16 plant structures | EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | BEST Arabidopsis thaliana protein match is: RING 1B Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG402029710 Zinc finger protein ST4.03ch02 - View
Solanum tuberosum PGSC0003DMG400032818 E3 ubiquitin-protein ligase RING1a ST4.03ch07 + View
Selenicereus undatus Hund21212 Scaffold_33680 + View
Trochodendron aralioides TAR624G1019 group9 - View
Trochodendron aralioides TAR629G3117 group0 + View
Trochodendron aralioides TAR626G0238 group3 + View
Theobroma cacao Thecc.02G183300 Ring 1b Chromosome_2 + View
Theobroma cacao Thecc.06G183600 Ring finger protein Chromosome_6 - View
Tarenaya hassleriana THA.LOC104814225 putative E3 ubiquitin-protein ligase RING1a NW_010965451.1 + View
Tarenaya hassleriana THA.LOC104820559 putative E3 ubiquitin-protein ligase RING1a NW_010966274.1 + View
Trifolium pratense TPR.G16344 Tp57577_TGAC_v2_scaf_271 - View
Tripterygium wilfordii TWI38G0969 NC_052252.1 + View
Tripterygium wilfordii TWI23G0740 NC_052239.1 - View
Vigna mungo VMungo0251G2875 CM024069.1 + View
Vitis vinifera GSVIVG01021091001 chr10 + View
Vitis vinifera GSVIVG01020579001 chr12 - View