Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0005528 PREDICTED: E3 ubiquitin-protein ligase RNF4-like [Nicotiana tomentosiformis] Chr11 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G17770 LG-5 + View
Acer truncatum Atru.chr6.1421 chr6 + View
Actinidia chinensis Actinidia30057 Lachesis_group24 + View
Actinidia chinensis Actinidia09470 Lachesis_group15 + View
Actinidia chinensis Actinidia39434 Lachesis_group20 + View
Arabidopsis lyrata AL8G21690 scaffold_8 - View
Arabidopsis lyrata AL3G18470 scaffold_3 + View
Avicennia marina MSTRG.18838 ScioBoG_22153_HRSCAF_22259 - View
Arabidopsis thaliana AT3G07200 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G48655.3)%3B Has 5779 Blast hits to 5761 proteins in 893 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 3772%3B Fungi - 732%3B Plants - 578%3B Viruses - 31%3B Other Eukaryotes - 666 (source: NCBI BLink). Chr3 + View
Arabidopsis thaliana AT5G48655 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to chitin%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G07200.2)%3B Has 4604 Blast hits to 4589 proteins in 307 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2946%3B Fungi - 673%3B Plants - 438%3B Viruses - 20%3B Other Eukaryotes - 527 (source: NCBI BLink). RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to chitin%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type%2C conserved site (InterPro:IPR017907)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G07200.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 - View
Amborella trichopoda ATR0069G013 AmTr_v1.0_scaffold00117 + View
Brassica carinata BcaC05g29747 ChrC05 - View
Brassica carinata BcaC06g30772 ChrC06 + View
Brassica carinata BcaC05g29849 ChrC05 + View
Brassica carinata BcaB07g30039 ChrB07 - View
Brassica napus C02p56760 C02 - View
Brassica napus BNapus_Darmor_BZH_scaffold_109p00190 BNapus_Darmor_BZH_scaffold_109 - View
Brassica napus A02p37670 A02 - View
Brassica napus C07p39320 C07 - View
Brassica napus A05p41010 A05 - View
Brassica napus C05p60160 C05 - View
Brassica napus A06p39020 A06 + View
Brassica oleracea BolC7t44452H C7 - View
Brassica oleracea BolC2t11744H C2 - View
Brassica oleracea BolC5t34667H C5 - View
Brassica oleracea BolC1t05565H C1 - View
Brassica rapa BraA05t22828Z A05 - View
Brassica rapa BraA06t26815Z A06 + View
Brassica rapa BraA01t04393Z A01 - View
Brassica rapa BraA02t08749Z A02 - View
Beta vulgaris EL10Ac7g17892 PTHR23041//PTHR23041:SF63 - RING FINGER DOMAIN-CONTAINING // C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED Chr7_EL10_PGA_scaffold5 + View
Cannabis sativa CANSAT01G2920 NC_044373.1 - View
Corylus avellana Haze_11641 Protein of unknown function 9 + View
Coffea canephora Cc01_g16770 Putative RING/U-box superfamily protein chr1 - View
Citrus clementina Ciclev10022263m.g scaffold_3 - View
Cardamine hirsuta CARHR081850 RING finger protein, putative Chr3 + View
Cardamine hirsuta CARHR183280 RING finger protein, putative Chr6 + View
Citrullus lanatus ClCG07G002050 RING finger protein, putative CG_Chr07 + View
Carica papaya Cpa.g.sc8.125 supercontig_8 - View
Chenopodium quinoa AUR62001129 Protein of unknown function C_Quinoa_Scaffold_2716 + View
Chenopodium quinoa AUR62016552 Protein of unknown function C_Quinoa_Scaffold_3514 - View
Capsella rubella Carub.0008s0834 PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED scaffold_8 - View
Capsella rubella Carub.0003s0672 PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED scaffold_3 + View
Daucus carota DCAR_004734 hypothetical protein DCARv2_Chr1 + View
Daucus carota DCAR_012667 hypothetical protein DCARv2_Chr3 + View
Davidia involucrata Dinv12654 GWHABJS00000007 + View
Davidia involucrata Dinv19179 GWHABJS00000010 - View
Durio zibethinus Duzib138G0225 NW_019167893.1 + View
Durio zibethinus Duzib133G1084 NW_019167938.1 + View
Durio zibethinus Duzib211G0537 NW_019168049.1 + View
Erigeron canadensis ECA247G3682 Conyza_canadensis_scaffold:7 - View
Eucalyptus grandis Eucgr.K02140 Chr11 - View
Erythranthe guttata Migut.D02502 scaffold_4 + View
Eutrema salsugineum Thhalv10004921m.g PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED scaffold_6 + View
Eutrema salsugineum Thhalv10021816m.g PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED scaffold_13 - View
Fragaria x ananassa FAN27G2188 PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED Fvb2-1 - View
Fragaria x ananassa FAN24G0368 PTHR23041//PTHR23041:SF63 - RING FINGER DOMAIN-CONTAINING // C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED Fvb2-2 + View
Fragaria x ananassa FAN15G3756 PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED Fvb2-4 - View
Fragaria vesca FvH4_2g18620 PTHR23041//PTHR23041:SF63 - RING FINGER DOMAIN-CONTAINING // C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED Fvb2 - View
Gossypium hirsutum Gohir.D07G164200 PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED D07 + View
Gossypium hirsutum Gohir.D07G205800 PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED D07 - View
Gossypium hirsutum Gohir.A07G199400 PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED A07 - View
Gossypium hirsutum Gohir.D11G145700 PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED D11 + View
Gossypium hirsutum Gohir.A07G158100 PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED A07 + View
Gossypium hirsutum Gohir.A11G139500 PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED A11 + View
Gossypium raimondii Gorai.001G231800 Chr01 - View
Gossypium raimondii Gorai.007G156200 Chr07 + View
Helianthus annuus HanXRQChr10g0279491 Putative zinc finger, RING/FYVE/PHD-type HanXRQChr10 + View
Hydrangea macrophylla Hma1.2p1_0226F.1_g095436 Hma1.2p1_0226F.1 - View
Lonicera japonica Lj1C88T6 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_9_15241 Lsat_1_v8_lg_9 + View
Lactuca sativa Lsat_1_v5_gn_8_89640 Lsat_1_v8_lg_8 - View
Malus domestica MD05G1172100 RING/U-box superfamily protein Chr05 - View
Manihot esculenta Manes.12G046900 Chromosome12 + View
Manihot esculenta Manes.13G049000 Chromosome13 + View
Nicotiana tabacum Nitab4.5_0000045g0450 Zinc finger, C3HC4 RING-type, Zinc finger, RING/FYVE/PHD-type, Zinc finger, RING-type, Zinc finger, RING-type, conserved site Nitab4.5_0000045 + View
Oryza sativa ssp. japonica Os09g0504700 Zinc finger, RING/FYVE/PHD-type domain containing protein. chr09 - View
Petunia axillaris Peaxi162Scf00238g00046 RING/U-box superfamily protein Peaxi162Scf00238 + View
Punica granatum PGR083G1441 NC_045133.1 - View
Punica granatum PGR044G0119 NC_045134.1 + View
Prunus persica Prupe.8G199600 PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED Pp08 - View
Populus trichocarpa Potri.002G245500 PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED Chr02 + View
Quercus lobata QL09p051749 9 - View
Rosa chinensis RcHm_v2.0_Chr6g0284181 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim13G0047300 chr13 + View
Rhododendron simsii Rhsim01G0254000 chr01 - View
Salix brachista Sabra02G0186800 GWHAAZH00000002 + View
Simmondsia chinensis Sc17g0002160 GWHAASQ00000017 - View
Sechium edule Sed0020045 LG05 + View
Solanum lycopersicum Solyc09g059450.4 RING/U-box superfamily protein (AHRD V3.3 --* AT5G48655.6) SL4.0ch09 + View
Solanum lycopersicum Solyc06g007870.3 E3 ubiquitin-protein ligase RNF4 (AHRD V3.3 *** A0A2I4H612_9ROSI) SL4.0ch06 - View
Schrenkiella parvula Sp2g19060 PTHR23041//PTHR23041:SF63 - RING FINGER DOMAIN-CONTAINING // C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED ch2-4 - View
Schrenkiella parvula Sp3g06150 PTHR23041:SF63 - C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED ch3-1 + View
Solanum pennellii Sopen09g022610 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | INVOLVED IN: response to chitin | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch09 + View
Selenicereus undatus Hund05574 Scaffold_19641 + View
Selenicereus undatus Hund18428 Scaffold_33675 + View
Trochodendron aralioides TAR636G2916 group1 - View
Trochodendron aralioides TAR365G0852 group16 - View
Trochodendron aralioides TAR362G0418 group17 + View
Theobroma cacao Thecc.01G221100 RING/U-box superfamily protein Chromosome_1 - View
Tarenaya hassleriana THA.LOC104818971 uncharacterized protein LOC104818971 isoform X1 NW_010966177.1 + View
Tarenaya hassleriana THA.LOC104822495 LON peptidase N-terminal domain and RING finger protein 3-like NW_010966665.1 - View
Tarenaya hassleriana THA.LOC104802660 E3 ubiquitin-protein ligase RNF4-like NW_010970490.1 - View
Tripterygium wilfordii TWI18G0693 NC_052241.1 + View
Tripterygium wilfordii TWI36G0113 NC_052237.1 - View
Tripterygium wilfordii TWI75G1449 NC_052253.1 - View
Vaccinium macrocarpon vmacro14740 Protein of unknown function chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro15556 Protein of unknown function chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro02780 Protein of unknown function chr9_Vaccinium_macrocarpon_Stevens_v1 + View