Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0026700 PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Citrus sinensis] Chr14 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G16990 LG-8 + View
Acer truncatum Atru.chr7.1421 chr7 - View
Actinidia chinensis Actinidia09439 Lachesis_group5 - View
Actinidia chinensis Actinidia20406 Lachesis_group18 - View
Arabidopsis lyrata AL3G48060 scaffold_3 - View
Arabidopsis thaliana AT2G20030 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: stem%2C root%2C flower%2C stamen%3B EXPRESSED DURING: 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G28890.1)%3B Has 9596 Blast hits to 9571 proteins in 288 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2467%3B Fungi - 781%3B Plants - 5028%3B Viruses - 54%3B Other Eukaryotes - 1260 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT4G28890 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C zinc ion binding%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: root stele%2C root endodermis%2C hypocotyl%2C root%2C primary root differentiation zone%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G20030.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr4 - View
Amborella trichopoda ATR0705G163 AmTr_v1.0_scaffold00056 - View
Brassica carinata BcaB03g16796 ChrB03 + View
Brassica carinata BcaC06g36680 ChrC06 + View
Brassica carinata BcaNung01351 Contig488 + View
Brassica napus C01p10590 C01 + View
Brassica napus A01p09040 A01 + View
Brassica oleracea BolC1t01021H C1 + View
Brassica oleracea BolC7t40549H C7 - View
Brassica rapa BraA01t00852Z A01 + View
Brassica rapa BraA07t27857Z A07 - View
Beta vulgaris EL10Ac8g18418 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Chr8_EL10_PGA_scaffold4 + View
Corylus avellana Haze_25792 Similar to ATL42: E3 ubiquitin-protein ligase ATL42 (Arabidopsis thaliana OX%3D3702) 8 - View
Coffea canephora Cc06_g10160 Putative E3 ubiquitin-protein ligase ATL42 chr6 - View
Citrus clementina Ciclev10010254m.g scaffold_1 - View
Ceratophyllum demersum CDE08G0913 6 + View
Ceratophyllum demersum CDE02G0770 1 - View
Carpinus fangiana Cfa003216 Cfa01 + View
Cardamine hirsuta CARHR110510 RING finger family protein Chr3 + View
Cardamine hirsuta CARHR236670 RING finger family protein Chr7 - View
Carya illinoinensis CiPaw.04G160200 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Chr04 + View
Carya illinoinensis CiPaw.03G227300 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Chr03 + View
Citrullus lanatus ClCG06G008940 RING finger family protein CG_Chr06 - View
Cucumis melo MELO3C024638.2 E3 ubiquitin-protein ligase ATL42-like chr02 - View
Corchorus olitorius COL.COLO4_34794 Zinc finger%2C RING-type AWUE01022442.1 + View
Carica papaya Cpa.g.sc40.30 supercontig_40 - View
Capsella rubella Carub.0007s1176 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED scaffold_7 + View
Daucus carota DCAR_012053 hypothetical protein DCARv2_Chr3 + View
Daucus carota DCAR_024696 hypothetical protein DCARv2_Chr7 - View
Davidia involucrata Dinv14255 GWHABJS00000017 + View
Davidia involucrata Dinv41648 GWHABJS00000013 - View
Durio zibethinus Duzib187G1477 NW_019167860.1 - View
Durio zibethinus Duzib150G1004 NW_019167882.1 + View
Durio zibethinus Duzib168G1708 NW_019168159.1 + View
Eucalyptus grandis Eucgr.C03789 Chr03 + View
Eucalyptus grandis Eucgr.C01015 Chr03 + View
Eucalyptus grandis Eucgr.C02915 Chr03 - View
Erythranthe guttata Migut.J01132 scaffold_10 + View
Erythranthe guttata Migut.A00215 scaffold_1 + View
Eutrema salsugineum Thhalv10001998m.g PTHR14155:SF95 - E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED scaffold_12 + View
Eutrema salsugineum Thhalv10025235m.g PTHR14155:SF95 - E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED scaffold_1 + View
Fragaria x ananassa FAN28G1738 PTHR14155:SF95 - E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Fvb1-1 + View
Fragaria x ananassa FAN23G0687 PTHR14155:SF95 - E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Fvb1-3 - View
Fragaria vesca FvH4_1g05750 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Fvb1 - View
Gossypium hirsutum Gohir.A07G004200 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED A07 + View
Gossypium hirsutum Gohir.A06G065500 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) A06 - View
Gossypium hirsutum Gohir.D07G008000 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED D07 - View
Gossypium hirsutum Gohir.D06G064100 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) D06 - View
Glycine max Glyma.06G084800 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Gm06 - View
Glycine max Glyma.01G146500 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Gm01 + View
Glycine max Glyma.09G194100 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Gm09 + View
Gossypium raimondii Gorai.001G007700 Chr01 - View
Gossypium raimondii Gorai.010G074800 Chr10 - View
Helianthus annuus HanXRQChr10g0318461 Probable RING/U-box superfamily protein HanXRQChr10 + View
Hydrangea macrophylla Hma1.2p1_0945F.1_g240190 Hma1.2p1_0945F.1 - View
Lupinus albus Lalb_Chr22g0352611 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Lalb_Chr22 - View
Lotus japonicus Lj2g0020831 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED chr2 - View
Lotus japonicus Lj1g0001889 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED chr1 + View
Lonicera japonica Lj4P408T10 GWHAAZE00000004 - View
Lonicera japonica Lj7P659T21 GWHAAZE00000007 - View
Lactuca sativa Lsat_1_v5_gn_5_144340 Lsat_1_v8_lg_5 + View
Lactuca sativa Lsat_1_v5_gn_7_41260 PTHR14155:SF95 - E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Lsat_1_v8_lg_7 + View
Magnolia biondii MBI01_g39828_MAGBIO AED:0.35 Chr01 + View
Malus domestica MD15G1192900 RING/U-box superfamily protein Chr15 - View
Malus domestica MD02G1058600 RING/U-box superfamily protein Chr02 - View
Manihot esculenta Manes.16G111700 Chromosome16 + View
Manihot esculenta Manes.16G072901 Chromosome16 - View
Manihot esculenta Manes.03G024800 Chromosome03 - View
Medicago truncatula Medtr6g087150 RING-H2 finger protein ATL4J chr6 + View
Medicago truncatula Medtr3g110190 RING-H2 finger protein ATL4J chr3 - View
Nelumbo nucifera Nn3g18159 chr3 - View
Nicotiana tabacum Nitab4.5_0001004g0150 Zinc finger, RING-type, Zinc finger, RING/FYVE/PHD-type Nitab4.5_0001004 - View
Olea europaea Oeu064903.1 chr9 - View
Petunia axillaris Peaxi162Scf00539g00023 RING/U-box superfamily protein Peaxi162Scf00539 + View
Petunia axillaris Peaxi162Scf00665g00111 RING/U-box superfamily protein Peaxi162Scf00665 - View
Punica granatum PGR044G1657 NC_045134.1 + View
Punica granatum PGR142G2173 NC_045128.1 - View
Prunus persica Prupe.7G224300 PTHR14155:SF95 - E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Pp07 + View
Pisum sativum Psat1g045400 Ring finger domain chr1LG6 + View
Pisum sativum Psat5g022080 Ring finger domain chr5LG3 + View
Papaver somniferum PSO210G2641 NC_039359.1 - View
Papaver somniferum PSO210G6459 NC_039359.1 - View
Populus trichocarpa Potri.018G042501 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Chr18 - View
Populus trichocarpa Potri.018G085001 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Chr18 - View
Populus trichocarpa Potri.006G239500 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Chr06 + View
Phaseolus vulgaris Phvul.009G109000 PTHR14155:SF95 - E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Chr09 - View
Phaseolus vulgaris Phvul.004G169200 PTHR14155:SF95 - E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED Chr04 + View
Quercus lobata QL02p043021 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr2g0091391 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim05G0042400 chr05 + View
Salix brachista Sabra18G0073400 GWHAAZH00000018 - View
Salix brachista Sabra06G0187100 GWHAAZH00000006 + View
Sechium edule Sed0017722 LG08 - View
Sechium edule Sed0013599 LG12 + View
Solanum lycopersicum Solyc12g007320.1 RING/U-box superfamily protein (AHRD V3.3 *** A0A2U1QGT0_ARTAN) SL4.0ch12 - View
Schrenkiella parvula Sp7g26870 PTHR14155//PTHR14155:SF95 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN-PROTEIN LIGASE ATL42-RELATED ch7-5 - View
Solanum tuberosum PGSC0003DMG400000301 Ring finger protein ST4.03ch12 + View
Trochodendron aralioides TAR624G1159 group9 + View
Trochodendron aralioides TAR383G0552 group10 - View
Theobroma cacao Thecc.09G104400 RING/U-box superfamily protein Chromosome_9 + View
Theobroma cacao Thecc.09G043700 RING/U-box superfamily protein Chromosome_9 - View
Tarenaya hassleriana THA.LOC104820047 E3 ubiquitin-protein ligase ATL42-like NW_010966177.1 + View
Tarenaya hassleriana THA.LOC104814563 E3 ubiquitin-protein ligase ATL42-like NW_010965451.1 - View
Tripterygium wilfordii TWI32G0577 NC_052254.1 - View
Tripterygium wilfordii TWI63G1111 NC_052240.1 - View
Tripterygium wilfordii TWI34G0047 NC_052235.1 + View
Vaccinium macrocarpon vmacro10874 Similar to ATL12: Putative RING-H2 finger protein ATL12 (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1309G0021 CM024072.1 + View
Vigna mungo VMungo0464G0908 CM024077.1 + View
Vitis vinifera GSVIVG01015336001 chr11 + View