Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0032627 PREDICTED: uncharacterized protein LOC100527350 isoform X1 [Glycine max] Chr2 + View
CSS0036240 PREDICTED: serine/arginine-rich splicing factor SR45a-like [Musa acuminata subsp. malaccensis] Chr2 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G12740 LG-6 - View
Acer truncatum Atru.chr3.913 chr3 + View
Actinidia chinensis Actinidia17400 Lachesis_group11 + View
Actinidia chinensis Actinidia22935 Lachesis_group26 - View
Arabidopsis lyrata AL7G15290 scaffold_7 + View
Avicennia marina MSTRG.15593 ScioBoG_19538_HRSCAF_19626 + View
Aquilegia oxysepala Aqoxy6G01922_Aqoxy6G01930 CHR06 - View
Arabidopsis thaliana AT4G35785 RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: ribonucleoprotein complex%2C chloroplast%3B EXPRESSED IN: cultured cell%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G07350.1)%3B Has 8909 Blast hits to 6784 proteins in 2360 species: Archae - 138%3B Bacteria - 6148%3B Metazoa - 581%3B Fungi - 681%3B Plants - 158%3B Viruses - 0%3B Other Eukaryotes - 1203 (source: NCBI BLink). Chr4 - View
Brassica carinata BcaC06g36301 ChrC06 - View
Brassica napus C07p05600 C07 + View
Brassica napus C03p80900 C03 - View
Brassica napus A08p21680 A08 + View
Brassica oleracea BolC7t40959H C7 + View
Brassica oleracea BolC3t20347H C3 - View
Brassica oleracea BolC1t00312H C1 + View
Brassica rapa BraA08t34118Z A08 + View
Brassica rapa BraA01t00275Z A01 + View
Cicer arietinum L. Ca_24947_v3 Ca_LG8_v3 + View
Cicer arietinum L. Ca_03641_v3 Ca_LG1_v3 - View
Corylus avellana Haze_03699 Similar to SR45A: Serine/arginine-rich splicing factor SR45a (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc07_g11370 Putative uncharacterized protein chr7 + View
Citrus clementina Ciclev10026375m.g scaffold_7 - View
Cardamine hirsuta CARHR244150 RNA-binding protein Chr7 - View
Carya illinoinensis CiPaw.08G125600 K12897 - transformer-2 protein (TRA2) Chr08 - View
Citrullus lanatus ClCG01G020630 RNA binding protein, putative CG_Chr01 + View
Cucumis melo MELO3C007946.2 serine/arginine-rich splicing factor SR45a chr08 + View
Corchorus olitorius COL.COLO4_22500 hypothetical protein AWUE01017978.1 + View
Carica papaya Cpa.g.sc6.317 supercontig_6 + View
Capsella rubella Carub.0007s0445 K12897 - transformer-2 protein (TRA2) scaffold_7 + View
Cucumis sativus L. CsaV3_6G047540 serine/arginine-rich splicing factor SR45a chr6 + View
Davidia involucrata Dinv08546 GWHABJS00000012 + View
Davidia involucrata Dinv40148 GWHABJS00000014 - View
Durio zibethinus Duzib264G0662 NW_019167960.1 + View
Durio zibethinus Duzib147G1265 NW_019168470.1 + View
Eucalyptus grandis Eucgr.J02495 Chr10 + View
Eutrema salsugineum Thhalv10022831m.g K12897 - transformer-2 protein (TRA2) scaffold_11 + View
Eutrema salsugineum Thhalv10026015m.g K12897 - transformer-2 protein (TRA2) scaffold_1 + View
Fragaria x ananassa FAN28G2795 K12897 - transformer-2 protein (TRA2) Fvb1-1 + View
Fragaria vesca FvH4_1g10991 K12897 - transformer-2 protein (TRA2) Fvb1 - View
Gossypium hirsutum Gohir.A02G174750 K12897 - transformer-2 protein (TRA2) A02 + View
Gossypium hirsutum Gohir.D03G005100 K12897 - transformer-2 protein (TRA2) D03 - View
Glycine max Glyma.01G162000 KOG0107//KOG0121 - Alternative splicing factor SRp20/9G8 (RRM superfamily) // Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) Gm01 - View
Glycine max Glyma.02G044000 PTHR15241 - TRANSFORMER-2-RELATED Gm02 + View
Glycine max Glyma.16G121300 K12897 - transformer-2 protein (TRA2) Gm16 + View
Gossypium raimondii Gorai.003G005400 Chr03 - View
Helianthus annuus HanXRQChr14g0442041 Putative RNA recognition motif domain; Nucleotide-binding alpha-beta plait domain HanXRQChr14 - View
Hydrangea macrophylla Hma1.2p1_0561F.1_g179010 Hma1.2p1_0561F.1 + View
Hydrangea macrophylla Hma1.2p1_0315F.1_g122630 Hma1.2p1_0315F.1 + View
Lupinus albus Lalb_Chr16g0377341 KOG0130//KOG4207 - RNA-binding protein RBM8/Tsunagi (RRM superfamily) // Predicted splicing factor, SR protein superfamily Lalb_Chr16 - View
Lupinus albus Lalb_Chr09g0321411 K12897 - transformer-2 protein (TRA2) Lalb_Chr09 - View
Lotus japonicus Lj2g0005168 K12897 - transformer-2 protein (TRA2) chr2 + View
Lactuca sativa Lsat_1_v5_gn_2_75300 PTHR15241 - TRANSFORMER-2-RELATED Lsat_1_v8_lg_2 + View
Malus domestica MD02G1123000 RNA-binding (RRM/RBD/RNP motifs) family protein Chr02 - View
Malus domestica MD15G1237000 RNA-binding (RRM/RBD/RNP motifs) family protein Chr15 - View
Manihot esculenta Manes.01G151200 Chromosome01 + View
Manihot esculenta Manes.02G110800 Chromosome02 + View
Medicago truncatula Medtr8g074790 RNA recognition motif, a.k.a. RRM, RBD protein chr8 + View
Medicago truncatula Medtr5g023060 RNA-binding (RRM/RBD/RNP motif) family protein chr5 + View
Nelumbo nucifera Nn6g31890 chr6 - View
Nicotiana tabacum Nitab4.5_0001561g0080 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0001561 - View
Nicotiana tabacum Nitab4.5_0000188g0260 RNA recognition motif domain, RNA recognition motif domain, eukaryote, Nucleotide-binding, alpha-beta plait Nitab4.5_0000188 + View
Nicotiana tabacum Nitab4.5_0001696g0040 RNA recognition motif domain, RNA recognition motif domain, eukaryote, Nucleotide-binding, alpha-beta plait Nitab4.5_0001696 + View
Nicotiana tabacum Nitab4.5_0001685g0020 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0001685 - View
Oryza sativa ssp. japonica Os06g0724600 Similar to Transformer-SR ribonucleoprotein (Fragment). Similar to transformer-2 protein. chr06 + View
Petunia axillaris Peaxi162Scf00439g00019 RNA-binding (RRM/RBD/RNP motifs) family protein Peaxi162Scf00439 - View
Punica granatum PGR102G0455 NC_045129.1 - View
Prunus persica Prupe.7G175500 Pp07 + View
Pisum sativum Psat4g102840 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr4LG4 - View
Pisum sativum Psat2g151560 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr2LG1 + View
Papaver somniferum PSO170G4747 NC_039360.1 + View
Papaver somniferum PSO210G7305 NC_039359.1 + View
Populus trichocarpa Potri.005G105700 K12897 - transformer-2 protein (TRA2) Chr05 + View
Phaseolus vulgaris Phvul.002G104100 K12897 - transformer-2 protein (TRA2) Chr02 - View
Quercus lobata QL06p052230 6 + View
Rosa chinensis RcHm_v2.0_Chr2g0098261 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim10G0205400 chr10 + View
Rhododendron simsii Rhsim08G0030000 chr08 - View
Salix brachista Sabra05G0086400 GWHAAZH00000005 + View
Sechium edule Sed0004633 LG14 + View
Sechium edule Sed0017861 LG10 + View
Solanum lycopersicum Solyc02g061840.3 RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *-* F4JNU2_ARATH) SL4.0ch02 - View
Solanum lycopersicum Solyc03g033310.4 RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *-* F4JNU2_ARATH) SL4.0ch03 - View
Solanum lycopersicum Solyc02g083320.3 RNA-binding (RRM/RBD/RNP motif) family protein (AHRD V3.3 *-* A0A2K3NPI1_TRIPR) SL4.0ch02 - View
Schrenkiella parvula Sp3g31100 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) ch3-6 - View
Schrenkiella parvula Sp7g33570 K12897 - transformer-2 protein (TRA2) ch7-6 - View
Solanum pennellii Sopen02g028110 RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: ribonucleoprotein complex, chloroplast | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein . Spenn-ch02 - View
Solanum pennellii Sopen03g006090 RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: ribonucleoprotein complex, chloroplast | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein . Spenn-ch03 - View
Solanum pennellii Sopen02g012870 RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: ribonucleoprotein complex, chloroplast | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein . Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG402003592 Transformer-SR ribonucleoprotein ST4.03ch02 - View
Solanum tuberosum PGSC0003DMG400008680 Transformer-SR ribonucleoprotein ST4.03ch02 - View
Solanum tuberosum PGSC0003DMG400022550 Arginine/serine-rich-splicing factor ST4.03ch03 - View
Selenicereus undatus Hund05148 Scaffold_19641 - View
Trochodendron aralioides TAR381G0797 group11 - View
Trochodendron aralioides TAR625G0166 group4 - View
Theobroma cacao Thecc.01G010900 Chromosome_1 - View
Trifolium pratense TPR.G25109 Tp57577_TGAC_v2_LG2 + View
Tripterygium wilfordii TWI73G0183 NC_052232.1 + View
Tripterygium wilfordii TWI09G0494 NC_052245.1 - View
Vaccinium macrocarpon vmacro18443 Similar to SR45A: Serine/arginine-rich splicing factor SR45a (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro20498 Similar to SR45A: Serine/arginine-rich splicing factor SR45a (Arabidopsis thaliana OX%3D3702) chr10_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1215G2719 CM024074.1 + View