Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0019316 PREDICTED: pentatricopeptide repeat-containing protein At5g59600 [Vitis vinifera] Chr11 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Arabidopsis thaliana AT5G27110 Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Brassica rapa BraA05t22971Z A05 - View
Carpinus fangiana Cfa006492 Cfa02 + View
Cardamine hirsuta CARHR079000 Pentatricopeptide repeat-containing protein Chr3 - View
Cardamine hirsuta CARHR185760 Pentatricopeptide repeat-containing protein Chr6 - View
Carya illinoinensis CiPaw.07G009600 PF01535 - PPR repeat (PPR) Chr07 + View
Chenopodium quinoa AUR62030634 PCMP-E41: Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic C_Quinoa_Scaffold_3631 - View
Capsella rubella Carub.0006s2539 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_6 + View
Eucalyptus grandis Eucgr.B01754 Chr02 - View
Eutrema salsugineum Thhalv10005537m.g PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_6 + View
Fragaria x ananassa FAN14G4234 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6-1 - View
Fragaria x ananassa FAN05G0289 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6-3 - View
Fragaria x ananassa FAN05G5794 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6-3 + View
Fragaria x ananassa FAN09G4877 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6-2 - View
Fragaria vesca FvH4_6g04050 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6 + View
Malus domestica MD04G1216800 Pentatricopeptide repeat (PPR) superfamily protein Chr04 - View
Punica granatum PGR031G3756 NC_045127.1 + View
Prunus persica Prupe.6G336500 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Pp06 - View
Rosa chinensis RcHm_v2.0_Chr3g0452611 RcHm_v2.0_Chr3 + View
Rhododendron simsii Rhsim05G0160200 chr05 - View
Salix brachista Sabra14G0098300 GWHAAZH00000014 + View
Solanum lycopersicum Solyc01g098150.3 Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A2G2YZ45_CAPAN) SL4.0ch01 - View
Schrenkiella parvula Sp3g03600 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) ch3-1 - View
Schrenkiella parvula Sp2g20390 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) ch2-4 - View
Solanum pennellii Sopen01g041720 Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality. | EMBRYO DEFECTIVE 175 (EMB175) | FUNCTIONS IN: catalytic activity | INVOLVED IN: embryo development ending in seed dormancy | LOCATED IN: chloroplast, membrane | EXPRESSED IN: root, flower, leaf | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch01 - View
Solanum tuberosum PGSC0003DMG400022458 EMB175 ST4.03ch01 - View