Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0033099 PREDICTED: uncharacterized protein LOC100250008 isoform X1 [Vitis vinifera] Contig211 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G8090 LG-7 - View
Aethionema arabicum Aa31LG4G11060 LG-4 - View
Acer truncatum Atru.chr11.1863 chr11 + View
Acer truncatum Atru.chr9.2271 chr9 + View
Acer truncatum Atru.chr11.1820 chr11 + View
Actinidia chinensis Actinidia04036 Lachesis_group4 - View
Actinidia chinensis Actinidia34991 Lachesis_group2 - View
Arabidopsis lyrata AL5G26950 scaffold_5 + View
Aquilegia oxysepala Aqoxy3G03347 CHR03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.YM2W79 PTHR22870//PTHR22870:SF219 - REGULATOR OF CHROMOSOME CONDENSATION // REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN-RELATED arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.KPJ78B PTHR22870//PTHR22870:SF219 - REGULATOR OF CHROMOSOME CONDENSATION // REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN-RELATED arahy.Tifrunner.gnm1.Arahy.03 - View
Arabidopsis thaliana AT1G69710 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain%3B FUNCTIONS IN: chromatin binding%2C zinc ion binding%2C Ran GTPase binding%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C FYVE-type (InterPro:IPR000306)%2C Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091)%2C Zinc finger%2C FYVE-related (InterPro:IPR017455)%2C Regulator of chromosome condensation%2C RCC1 (InterPro:IPR000408)%2C Pleckstrin homology-type (InterPro:IPR011993)%2C Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%3B BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G19420.1)%3B Has 25088 Blast hits to 10396 proteins in 690 species: Archae - 87%3B Bacteria - 2712%3B Metazoa - 10178%3B Fungi - 1575%3B Plants - 3087%3B Viruses - 5%3B Other Eukaryotes - 7444 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT3G47660 Regulator of chromosome condensation (RCC1) family protein Regulator of chromosome condensation (RCC1) family protein%3B FUNCTIONS IN: chromatin binding%2C zinc ion binding%2C Ran GTPase binding%3B EXPRESSED IN: leaf whorl%2C male gametophyte%2C flower%2C pollen tube%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C FYVE-type (InterPro:IPR000306)%2C Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091)%2C Zinc finger%2C FYVE-related (InterPro:IPR017455)%2C Regulator of chromosome condensation%2C RCC1 (InterPro:IPR000408)%2C Pleckstrin homology-type (InterPro:IPR011993)%2C Zinc finger%2C FYVE/PHD-type (InterPro:IPR011011)%3B BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G19420.1)%3B Has 18978 Blast hits to 7605 proteins in 414 species: Archae - 65%3B Bacteria - 1839%3B Metazoa - 7882%3B Fungi - 907%3B Plants - 2582%3B Viruses - 3%3B Other Eukaryotes - 5700 (source: NCBI BLink). Chr3 + View
Amborella trichopoda ATR0564G207 AmTr_v1.0_scaffold00010 - View
Brassica carinata BcaC03g15111 ChrC03 + View
Brassica napus A02p16080 A02 + View
Brassica napus C02p26720 C02 + View
Brassica oleracea BolC2t08744H C2 + View
Brassica rapa BraA09t39544Z A09 + View
Beta vulgaris EL10Ac6g13182 PTHR22870//PTHR22870:SF187 - REGULATOR OF CHROMOSOME CONDENSATION // SUBFAMILY NOT NAMED Chr6_EL10_PGA_scaffold0 - View
Capsicum annuum CAN.G407.114 PGAv.1.6.scaffold407 - View
Corylus avellana Haze_12028 Similar to PRAF1: PH, RCC1 and FYVE domains-containing protein 1 (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc04_g16950 Putative Probable E3 ubiquitin-protein ligase HERC1 chr4 + View
Coffea canephora Cc11_g13170 Putative Probable E3 ubiquitin-protein ligase HERC1 chr11 + View
Citrus clementina Ciclev10030553m.g scaffold_4 - View
Citrus clementina Ciclev10019354m.g scaffold_3 + View
Cardamine hirsuta CARHR062700 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain Chr2 + View
Cardamine hirsuta CARHR156340 Regulator of chromosome condensation (RCC1) family protein Chr5 + View
Carya illinoinensis CiPaw.05G137000 PTHR22870//PTHR22870:SF187//PTHR22870:SF219 - REGULATOR OF CHROMOSOME CONDENSATION // SUBFAMILY NOT NAMED // REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN-RELATED Chr05 + View
Carica papaya Cpa.g.sc17.230 supercontig_17 - View
Chenopodium quinoa AUR62028803 UVR8: Ultraviolet-B receptor UVR8 C_Quinoa_Scaffold_2837 + View
Chenopodium quinoa AUR62005755 UVR8: Ultraviolet-B receptor UVR8 C_Quinoa_Scaffold_1214 - View
Capsella rubella Carub.0005s1379 PF00415//PF01363 - Regulator of chromosome condensation (RCC1) repeat (RCC1) // FYVE zinc finger (FYVE) scaffold_5 + View
Daucus carota DCAR_007147 hypothetical protein DCARv2_Chr2 - View
Daucus carota DCAR_021528 hypothetical protein DCARv2_Chr6 - View
Davidia involucrata Dinv16631 GWHABJS00000018 - View
Davidia involucrata Dinv19944 GWHABJS00000006 + View
Davidia involucrata Dinv34166 GWHABJS00000008 + View
Durio zibethinus Duzib248G0193 NW_019168048.1 - View
Durio zibethinus Duzib251G0937 NW_019167971.1 + View
Erigeron canadensis ECA232G1783 Conyza_canadensis_scaffold:2 + View
Erigeron canadensis ECA246G5134 Conyza_canadensis_scaffold:8 + View
Eucalyptus grandis Eucgr.G02511 Chr07 + View
Erythranthe guttata Migut.L01309 scaffold_12 + View
Erythranthe guttata Migut.I00164 scaffold_9 - View
Eutrema salsugineum Thhalv10011027m.g PF00415//PF01363 - Regulator of chromosome condensation (RCC1) repeat (RCC1) // FYVE zinc finger (FYVE) scaffold_16 - View
Eutrema salsugineum Thhalv10018063m.g PTHR22870:SF205 - REGULATOR OF CHROMOSOME CONDENSATION AND FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN scaffold_9 - View
Fragaria x ananassa FAN12G1530 PTHR22870//PTHR22870:SF187 - REGULATOR OF CHROMOSOME CONDENSATION // SUBFAMILY NOT NAMED Fvb4-3 - View
Fragaria vesca FvH4_4g31540 PTHR22870//PTHR22870:SF187 - REGULATOR OF CHROMOSOME CONDENSATION // SUBFAMILY NOT NAMED Fvb4 + View
Gossypium hirsutum Gohir.D13G073500 PTHR22870//PTHR22870:SF187 - REGULATOR OF CHROMOSOME CONDENSATION // SUBFAMILY NOT NAMED D13 - View
Gossypium hirsutum Gohir.A11G030521 PF00415//PF01363//PF16457 - Regulator of chromosome condensation (RCC1) repeat (RCC1) // FYVE zinc finger (FYVE) // Pleckstrin homology domain (PH_12) A11 - View
Gossypium hirsutum Gohir.D11G033801 PF00415//PF01363//PF16457 - Regulator of chromosome condensation (RCC1) repeat (RCC1) // FYVE zinc finger (FYVE) // Pleckstrin homology domain (PH_12) D11 - View
Gossypium hirsutum Gohir.A13G073500 PTHR22870//PTHR22870:SF187//PTHR22870:SF219 - REGULATOR OF CHROMOSOME CONDENSATION // SUBFAMILY NOT NAMED // REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN-RELATED A13 - View
Gossypium hirsutum Gohir.A03G099900 PTHR22870//PTHR22870:SF219 - REGULATOR OF CHROMOSOME CONDENSATION // REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN-RELATED A03 - View
Glycine max Glyma.08G299051 KOG4275 - Predicted E3 ubiquitin ligase Gm08 - View
Gossypium raimondii Gorai.013G084200 Chr13 - View
Gossypium raimondii Gorai.007G036600 Chr07 - View
Gossypium raimondii Gorai.005G140400 Chr05 - View
Hydrangea macrophylla Hma1.2p1_0265F.1_g106690 Hma1.2p1_0265F.1 - View
Lonicera japonica Lj3C1039T2 GWHAAZE00000003 + View
Lonicera japonica Lj9A462G74 GWHAAZE00000009 - View
Lactuca sativa Lsat_1_v5_gn_5_19381 Lsat_1_v8_lg_5 - View
Magnolia biondii MBI02_g23678_MAGBIO AED:0.24 Chr02 + View
Magnolia biondii MBI05_g35462_MAGBIO AED:0.15 Chr05 + View
Malus domestica MD13G1073700 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain Chr13 + View
Malus domestica MD16G1075000 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain Chr16 + View
Manihot esculenta Manes.01G187200 Chromosome01 + View
Manihot esculenta Manes.05G099900 Chromosome05 - View
Nelumbo nucifera Nn4g23120 chr4 - View
Nelumbo nucifera Nn3g17197 chr3 + View
Nicotiana tabacum Nitab4.5_0002257g0100 FYVE zinc finger, Zinc finger, FYVE-related, Zinc finger, FYVE/PHD-type, Regulator of chromosome condensation, RCC1, Pleckstrin homology domain, Zinc finger, RING/FYVE/PHD-type, Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II, Pleckstrin homology-like domain Nitab4.5_0002257 - View
Nicotiana tabacum Nitab4.5_0000703g0060 FYVE zinc finger, Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II, Brevis radix (BRX) domain, Regulator of chromosome condensation, RCC1, Transcription factor BREVIS RADIX, N-terminal domain, Zinc finger, FYVE/PHD-type, Zinc finger, FYVE-related, Pleckstrin homology-like domain, Zinc finger, RING/FYVE/PHD-type Nitab4.5_0000703 - View
Olea europaea Oeu054891.1 chr6 - View
Olea europaea Oeu006500.1 chr10 + View
Petunia axillaris Peaxi162Scf00274g00849 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain Peaxi162Scf00274 + View
Petunia axillaris Peaxi162Scf00541g00631 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain Peaxi162Scf00541 + View
Punica granatum PGR119G0679 NC_045132.1 + View
Prunus persica Prupe.1G272300 PTHR22870//PTHR22870:SF187 - REGULATOR OF CHROMOSOME CONDENSATION // SUBFAMILY NOT NAMED Pp01 - View
Pisum sativum Psat4g138560 Chromosome condensation regulator RCC1 signature chr4LG4 - View
Papaver somniferum PSO063G6822 NC_039364.1 - View
Papaver somniferum PSO832G3081 NC_039367.1 + View
Phaseolus vulgaris Phvul.003G066900 PTHR22870:SF219 - REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN-RELATED Chr03 + View
Quercus lobata QL03p064588 3 + View
Rosa chinensis RcHm_v2.0_Chr4g0440051 RcHm_v2.0_Chr4 + View
Striga asiatica SGA_v2.0_scaffold302G47827 scaffold302 + View
Striga asiatica SGA_v2.0_scaffold53G19413 scaffold53 + View
Salvia bowleyana SalBow2G2855 GWHASIU00000007 + View
Simmondsia chinensis Sc04g0008250 GWHAASQ00000004 + View
Solanum lycopersicum Solyc03g116360.2 Regulator of chromosome condensation (RCC1) family protein (AHRD V3.3 *** A0A1I9LLL7_ARATH) SL4.0ch03 + View
Schrenkiella parvula Sp5g24840 PTHR22870:SF205 - REGULATOR OF CHROMOSOME CONDENSATION AND FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN ch5-6 + View
Solanum pennellii Sopen03g035290 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type , Regulator of chromosome condensation/beta-lactamase-inhibitor protein II , Zinc finger, FYVE-related , Regulator of chromosome condensation, RCC1 , Pleckstrin homology-type , Disease resistance/zinc finger/chromosome condensation-like region , Zinc finger, FYVE/PHD-type | BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain ., Regulator of chromosome condensation/beta-lactamase-inhibitor protein II Spenn-ch03 + View
Solanum pennellii Sopen05g003240 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type , Regulator of chromosome condensation/beta-lactamase-inhibitor protein II , Zinc finger, FYVE-related , Regulator of chromosome condensation, RCC1 , Pleckstrin homology-type , Disease resistance/zinc finger/chromosome condensation-like region , Zinc finger, FYVE/PHD-type | BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain ., Regulator of chromosome condensation/beta-lactamase-inhibitor protein II Spenn-ch05 - View
Solanum tuberosum PGSC0003DMG400000601 ZR1 protein ST4.03ch03 + View
Solanum tuberosum PGSC0003DMG401023061 Regulator of chromosome condensation RCC1 ST4.03ch05 + View
Selenicereus undatus Hund05892 Scaffold_19641 + View
Selenicereus undatus Hund25253 Scaffold_3410 + View
Trochodendron aralioides TAR374G0405 group12 + View
Trochodendron aralioides TAR622G0307 group8 + View
Trochodendron aralioides TAR622G0223 group8 + View
Theobroma cacao Thecc.03G084000 Ran GTPase binding protein Chromosome_3 - View
Theobroma cacao Thecc.02G350100 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain Chromosome_2 - View
Tarenaya hassleriana THA.LOC104808767 ultraviolet-B receptor UVR8 NW_010960187.1 + View
Tarenaya hassleriana THA.LOC104822111 uncharacterized protein LOC104822111 isoform X2 NW_010966617.1 - View
Vaccinium macrocarpon vmacro16342 Similar to PRAF1: PH, RCC1 and FYVE domains-containing protein 1 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro16556 Similar to PRAF1: PH, RCC1 and FYVE domains-containing protein 1 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0251G3443 CM024069.1 + View
Vitis vinifera GSVIVG01008027001 chr17 - View
Vitis vinifera GSVIVG01020015001 chr1 - View