Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0028202 PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Nelumbo nucifera] Chr1 - View
CSS0036313 PREDICTED: RING-H2 finger protein ATL11-like [Nicotiana sylvestris] Chr9 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G15140 LG-6 - View
Aethionema arabicum Aa31LG9G14740 LG-9 + View
Aethionema arabicum Aa31LG7G6420 LG-7 + View
Acer truncatum Atru.chr13.1098 chr13 - View
Acer truncatum Atru.chr3.1324 chr3 - View
Actinidia chinensis Actinidia33118 Lachesis_group27 - View
Actinidia chinensis Actinidia29601 Lachesis_group7 - View
Arabidopsis lyrata AL7G12410 scaffold_7 + View
Arabidopsis lyrata AL1G36040 scaffold_1 + View
Aquilegia oxysepala Aqoxy6G00693 CHR06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.GHXX5X PF13639 - Ring finger domain (zf-RING_2) arahy.Tifrunner.gnm1.Arahy.15 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.APQR8A PF13639 - Ring finger domain (zf-RING_2) arahy.Tifrunner.gnm1.Arahy.05 - View
Arabidopsis thaliana AT4G40070 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1)%3B Has 9770 Blast hits to 9744 proteins in 297 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2524%3B Fungi - 782%3B Plants - 4953%3B Viruses - 74%3B Other Eukaryotes - 1437 (source: NCBI BLink). Chr4 + View
Arabidopsis thaliana AT4G09100 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: stem%2C root%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G35000.1)%3B Has 9246 Blast hits to 9221 proteins in 278 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 2331%3B Fungi - 762%3B Plants - 4890%3B Viruses - 29%3B Other Eukaryotes - 1232 (source: NCBI BLink). Chr4 + View
Arabidopsis thaliana AT1G22500 RING/U-box superfamily protein Gene encodes a putative C3HC4-type RING zinc finger factor. it is induced in response to light and ascorbate stimulus. RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: stem%2C cotyledon%2C root%2C leaf%3B EXPRESSED DURING: LP.06 six leaves visible%2C LP.04 four leaves visible%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1)%3B Has 9627 Blast hits to 9604 proteins in 288 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 2532%3B Fungi - 813%3B Plants - 4919%3B Viruses - 76%3B Other Eukaryotes - 1285 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC05g26177 ChrC05 + View
Brassica carinata BcaB07g32261 ChrB07 + View
Brassica carinata BcaB01g02804 ChrB01 - View
Brassica carinata BcaC01g04731 ChrC01 - View
Brassica napus C03p34380 C03 + View
Brassica napus C05p21620 C05 + View
Brassica napus A03p28450 A03 + View
Brassica oleracea BolC5t30857H C5 + View
Brassica oleracea BolC7t42640H C7 - View
Brassica oleracea BolC3t15748H C3 + View
Brassica rapa BraA09t39708Z A09 - View
Brassica rapa BraA03t12050Z A03 + View
Beta vulgaris EL10Ac6g14807 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Chr6_EL10_PGA_scaffold0 - View
Cannabis sativa CANSAT01G0110 NC_044373.1 + View
Cicer arietinum L. Ca_16031_v3 Ca_LG5_v3 - View
Corylus avellana Haze_18247 Similar to ATL11: RING-H2 finger protein ATL11 (Arabidopsis thaliana OX%3D3702) 7 - View
Corylus avellana Haze_15042 Similar to ATL6: E3 ubiquitin-protein ligase ATL6 (Arabidopsis thaliana OX%3D3702) 11 + View
Coffea canephora Cc10_g06570 Putative E3 ubiquitin-protein ligase ATL15 chr10 - View
Citrus clementina Ciclev10001341m.g scaffold_5 - View
Citrus clementina Ciclev10027093m.g scaffold_7 - View
Ceratophyllum demersum CDE06G2704 4 + View
Carpinus fangiana Cfa004369 Cfa01 - View
Carpinus fangiana Cfa017905 Cfa07 + View
Cardamine hirsuta CARHR034130 RING finger protein Chr1 + View
Cardamine hirsuta CARHR246550 RING finger protein Chr7 - View
Cardamine hirsuta CARHR022840 RING finger family protein Chr1 + View
Cardamine hirsuta CARHR260150 RING finger protein Chr8 - View
Carya illinoinensis CiPaw.15G044600 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Chr15 - View
Carya illinoinensis CiPaw.01G048500 PTHR14155//PTHR14155:SF2 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL60 Chr01 - View
Carya illinoinensis CiPaw.12G065000 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Chr12 - View
Carya illinoinensis CiPaw.11G095300 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Chr11 - View
Citrullus lanatus ClCG11G014380 RING/U-box superfamily protein LENGTH=404 CG_Chr11 + View
Citrullus lanatus ClCG01G018540 Ring finger protein, putative CG_Chr01 - View
Cucumis melo MELO3C011053.2 RING-H2 finger protein ATL11-like chr03 - View
Cucumis melo MELO3C007732.2 Ring finger protein, putative chr08 - View
Cucumis melo MELO3C003544.2 E3 ubiquitin-protein ligase ATL15-like chr04 - View
Carica papaya Cpa.g.sc55.59 supercontig_55 - View
Chenopodium quinoa AUR62027195 ATL6: E3 ubiquitin-protein ligase ATL6 C_Quinoa_Scaffold_2924 - View
Chenopodium quinoa AUR62027825 Protein of unknown function C_Quinoa_Scaffold_3784 + View
Chenopodium quinoa AUR62018985 ATL6: E3 ubiquitin-protein ligase ATL6 C_Quinoa_Scaffold_3876 + View
Capsella rubella Carub.0006s2766 PTHR14155 - RING FINGER DOMAIN-CONTAINING scaffold_6 + View
Capsella rubella Carub.0001s3296 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) scaffold_1 + View
Capsella rubella Carub.0007s0206 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) scaffold_7 + View
Capsella rubella Carub.0001s2203 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) scaffold_1 + View
Cucumis sativus L. CsaV3_3G047780 E3 ubiquitin-protein ligase ATL15-like chr3 + View
Cucumis sativus L. CsaV3_2G029950 RING-H2 finger protein ATL11-like chr2 + View
Cucumis sativus L. CsaV3_6G045190 Ring finger protein, putative chr6 - View
Davidia involucrata Dinv13634 GWHABJS00000014 - View
Davidia involucrata Dinv08878 GWHABJS00000021 - View
Davidia involucrata Dinv44815 GWHABJS00000002 + View
Durio zibethinus Duzib093G0424 NW_019167937.1 + View
Durio zibethinus Duzib116G0797 NW_019167949.1 - View
Erigeron canadensis ECA247G2649 Conyza_canadensis_scaffold:7 + View
Eucalyptus grandis Eucgr.F00384 Chr06 - View
Eutrema salsugineum Thhalv10025687m.g K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) scaffold_1 + View
Eutrema salsugineum Thhalv10029503m.g K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) scaffold_3 - View
Eutrema salsugineum Thhalv10007970m.g K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) scaffold_5 - View
Fragaria x ananassa FAN13G1074 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Fvb5-2 - View
Fragaria x ananassa FAN18G3843 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Fvb5-1 - View
Fragaria x ananassa FAN04G2571 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Fvb5-4 - View
Fragaria x ananassa FAN28G0639 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Fvb1-1 + View
Fragaria x ananassa FAN08G0268 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Fvb5-3 + View
Fragaria x ananassa FAN26G2559 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Fvb1-2 - View
Fragaria vesca FvH4_5g36230 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Fvb5 - View
Fragaria vesca FvH4_1g20110 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Fvb1 - View
Gossypium hirsutum Gohir.D11G218350 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) D11 - View
Gossypium hirsutum Gohir.A11G204601 PTHR14155//PTHR14155:SF2 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL60 A11 + View
Glycine max Glyma.04G098100 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Gm04 - View
Glycine max Glyma.06G099800 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Gm06 - View
Glycine max Glyma.14G178200 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Gm14 + View
Glycine max Glyma.02G210600 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Gm02 + View
Gossypium raimondii Gorai.007G235700 Chr07 + View
Gossypium raimondii Gorai.008G091500 Chr08 + View
Lupinus albus Lalb_Chr04g0252851 PTHR14155//PTHR14155:SF78 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL43 Lalb_Chr04 + View
Lupinus albus Lalb_Chr05g0215941 PF13639 - Ring finger domain (zf-RING_2) Lalb_Chr05 + View
Lupinus albus Lalb_Chr17g0344331 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Lalb_Chr17 + View
Lupinus albus Lalb_Chr08g0242241 PF13639 - Ring finger domain (zf-RING_2) Lalb_Chr08 + View
Lupinus albus Lalb_Chr11g0065231 PTHR14155:SF2 - RING-H2 FINGER PROTEIN ATL60 Lalb_Chr11 - View
Lupinus albus Lalb_Chr10g0102581 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Lalb_Chr10 + View
Lotus japonicus Lj1g0025831 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) chr1 + View
Lotus japonicus Lj1g0006546 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) chr1 - View
Lonicera japonica Lj4P729T23 GWHAAZE00000004 + View
Lonicera japonica Lj2P538T23 GWHAAZE00000002 - View
Magnolia biondii MBI06_g03309_MAGBIO AED:0.32 Chr06 + View
Magnolia biondii MBI02_g41008_MAGBIO AED:0.01 Chr02 + View
Malus domestica MD08G1190600 RING/U-box superfamily protein Chr08 + View
Malus domestica MD15G1316800 RING/U-box superfamily protein Chr15 - View
Malus domestica MD15G1377900 RING/U-box superfamily protein Chr15 + View
Manihot esculenta Manes.18G062950 Chromosome18 - View
Manihot esculenta Manes.02G148400 Chromosome02 - View
Medicago truncatula Medtr5g064980 RING-H2 zinc finger protein chr5 + View
Medicago truncatula Medtr3g099650 RING-H2 zinc finger protein, putative chr3 + View
Nelumbo nucifera Nn5g29967 chr5 - View
Nelumbo nucifera Nn1g05478 chr1 + View
Oryza sativa ssp. japonica Os03g0188200 Zinc finger, RING/FYVE/PHD-type domain containing protein. chr03 - View
Oryza sativa ssp. japonica Os08g0484200 Zinc finger, RING/FYVE/PHD-type domain containing protein. chr08 + View
Oryza sativa ssp. japonica Os09g0468300 Hypothetical conserved gene. chr09 - View
Petunia axillaris Peaxi162Scf00160g01124 RING/U-box superfamily protein Peaxi162Scf00160 - View
Petunia axillaris Peaxi162Scf00139g00051 RING/U-box superfamily protein Peaxi162Scf00139 + View
Punica granatum PGR042G1998 NC_045130.1 + View
Prunus persica Prupe.1G524600 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Pp01 + View
Populus trichocarpa Potri.003G093500 PF13639 - Ring finger domain (zf-RING_2) Chr03 - View
Populus trichocarpa Potri.005G160900 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Chr05 - View
Phaseolus vulgaris Phvul.008G177600 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Chr08 + View
Phaseolus vulgaris Phvul.009G033900 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Chr09 + View
Quercus lobata QL02p002163 CM012294 - View
Quercus lobata QL06p047810 6 - View
Rosa chinensis RcHm_v2.0_Chr7g0238061 RcHm_v2.0_Chr7 - View
Rosa chinensis RcHm_v2.0_Chr2g0112141 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim07G0205500 chr07 + View
Rhododendron simsii Rhsim08G0013700 chr08 + View
Rhododendron simsii Rhsim10G0169500 chr10 + View
Rhododendron simsii Rhsim06G0076300 chr06 + View
Salix brachista Sabra05G0122000 GWHAAZH00000005 - View
Simmondsia chinensis Sc23g0000480 GWHAASQ00000023 + View
Simmondsia chinensis Sc16g0000400 GWHAASQ00000016 + View
Simmondsia chinensis Sc01g0000900 GWHAASQ00000001 - View
Sechium edule Sed0005679 LG05 - View
Sechium edule Sed0023565 LG14 + View
Sechium edule Sed0012029 LG04 + View
Solanum lycopersicum Solyc04g074820.3 RING/U-box superfamily protein (AHRD V3.3 *** A0A2H1ZED7_ARATH) SL4.0ch04 + View
Solanum lycopersicum Solyc12g087860.3 RING/U-box superfamily protein (AHRD V3.3 *** A0A2H1ZED7_ARATH) SL4.0ch12 + View
Schrenkiella parvula Sp6g08420 KOG1493 - Anaphase-promoting complex (APC), subunit 11 ch6-3 - View
Schrenkiella parvula Sp7g35780 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) ch7-6 - View
Schrenkiella parvula Sp1g19980 PF13639 - Ring finger domain (zf-RING_2) ch1-1 + View
Solanum pennellii Sopen12g029900 Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | ATL6 | FUNCTIONS IN: zinc ion binding | INVOLVED IN: response to chitin | LOCATED IN: plasma membrane | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: carbon/nitrogen insensitive 1 Spenn-ch12 + View
Solanum tuberosum PGSC0003DMG400017762 RING/C3HC4/PHD zinc finger ST4.03ch12 + View
Solanum tuberosum PGSC0003DMG400002135 Zinc finger protein ST4.03ch04 + View
Trochodendron aralioides TAR381G1232 group11 - View
Trochodendron aralioides TAR628G0199 group5 + View
Trochodendron aralioides TAR376G0118 group14 + View
Theobroma cacao Thecc.01G093900 RING/U-box superfamily protein Chromosome_1 - View
Theobroma cacao Thecc.08G064600 RING/U-box superfamily protein Chromosome_8 + View
Tarenaya hassleriana THA.LOC104809725 RING-H2 finger protein ATL11-like NW_010965051.1 + View
Tarenaya hassleriana THA.LOC104825169 RING-H2 finger protein ATL34-like NW_010960187.1 - View
Tarenaya hassleriana THA.LOC104810622 RING-H2 finger protein ATL11-like NW_010960187.1 - View
Trifolium pratense TPR.G6343 Tp57577_TGAC_v2_LG3 - View
Tripterygium wilfordii TWI74G0162 NC_052234.1 - View
Tripterygium wilfordii TWI12G1041 NC_052243.1 + View
Tripterygium wilfordii TWI56G0114 NC_052242.1 - View
Vaccinium macrocarpon vmacro04703 Similar to ATL6: E3 ubiquitin-protein ligase ATL6 (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro21930 Similar to ATL6: E3 ubiquitin-protein ligase ATL6 (Arabidopsis thaliana OX%3D3702) chr10_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro18577 Similar to ATL6: E3 ubiquitin-protein ligase ATL6 (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0647G1576 CM024073.1 - View
Vanilla planifolia HPP92_016761 RING/U-box superfamily protein *** CM028157.1 - View
Vitis vinifera GSVIVG01009098001 chr18 + View
Zea mays Zm00001eb255510 Zm00001e015905 E3 ubiquitin-protein ligase ATL6 5 + View
Zea mays Zm00001eb315600 Zm00001e034421 E3 ubiquitin-protein ligase ATL6 7 - View
Zea mays Zm00001eb101180 Zm00001e009988 E3 ubiquitin-protein ligase ATL6 2 - View