Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0017718 polyubiquitin (ubq10) [Arabidopsis thaliana] Contig674 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G2250 LG-3 - View
Arabidopsis lyrata AL3G21020 scaffold_3 - View
Avicennia marina MSTRG.19148 ScioBoG_25048_HRSCAF_25167 - View
Avicennia marina MSTRG.5731 ScioBoG_102839_HRSCAF_103093 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4WM679 K04551 - ubiquitin B (UBB) arahy.Tifrunner.gnm1.Arahy.16 - View
Arabidopsis thaliana AT3G09790 ubiquitin 8 encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region%2C but at least one repeat per gene encodes a protein with amino acid substitutions. ubiquitin 8 (UBQ8)%3B INVOLVED IN: protein modification process%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: cell wall%2C intracellular%2C vacuole%3B EXPRESSED IN: guard cell%2C juvenile leaf%2C trichome%3B CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956)%2C Ubiquitin (InterPro:IPR000626)%2C Ubiquitin supergroup (InterPro:IPR019955)%3B BEST Arabidopsis thaliana protein match is: polyubiquitin 10 (TAIR:AT4G05320.4)%3B Has 39057 Blast hits to 7018 proteins in 718 species: Archae - 0%3B Bacteria - 147%3B Metazoa - 16312%3B Fungi - 4980%3B Plants - 8397%3B Viruses - 1303%3B Other Eukaryotes - 7918 (source: NCBI BLink). Chr3 - View
Brassica napus A10p32690 A10 + View
Beta vulgaris EL10Ac7g16528 KOG0001//KOG0005 - Ubiquitin and ubiquitin-like proteins // Ubiquitin-like protein Chr7_EL10_PGA_scaffold5 + View
Cannabis sativa CANSAT80G0071 NC_044372.1 - View
Coffea canephora Cc09_g03100 Ubiquitin-NEDD8-like protein RUB2 chr9 + View
Citrus clementina Ciclev10011684m.g scaffold_6 + View
Cardamine hirsuta CARHR084240 Polyubiquitin Chr3 - View
Carya illinoinensis CiPaw.09G178100 PTHR10666:SF155 - POLYUBIQUITIN 4 Chr09 + View
Corchorus olitorius COL.COLO4_27049 Ubiquitin AWUE01019426.1 + View
Capsella rubella Carub.0003s0888 K08770 - ubiquitin C (UBC) scaffold_3 - View
Davidia involucrata Dinv35738 GWHABJS00000015 - View
Durio zibethinus Duzib093G0663 NW_019167937.1 + View
Durio zibethinus Duzib106G1952 NW_019168492.1 + View
Durio zibethinus Duzib128G1440 NW_019168481.1 + View
Eucalyptus grandis Eucgr.A01163 Chr01 - View
Erythranthe guttata Migut.L01672 scaffold_12 - View
Erythranthe guttata Migut.J00431 scaffold_10 - View
Eutrema salsugineum Thhalv10022008m.g K08770 - ubiquitin C (UBC) scaffold_13 + View
Fragaria vesca FvH4_6g15622 K04551 - ubiquitin B (UBB) Fvb6 - View
Gossypium hirsutum Gohir.A09G151000 K04551 - ubiquitin B (UBB) A09 + View
Gossypium hirsutum Gohir.D09G146600 K04551 - ubiquitin B (UBB) D09 + View
Gossypium hirsutum Gohir.D04G114300 PTHR10666//PTHR10666:SF150 - UBIQUITIN // POLYUBIQUITIN 3 D04 + View
Gossypium hirsutum Gohir.A04G075200 PTHR10666//PTHR10666:SF150 - UBIQUITIN // POLYUBIQUITIN 3 A04 + View
Glycine max Glyma.13G138600 K04551//K08770 - ubiquitin B (UBB) // ubiquitin C (UBC) Gm13 - View
Glycine max Glyma.10G051100 K04551//K08770 - ubiquitin B (UBB) // ubiquitin C (UBC) Gm10 - View
Gossypium raimondii Gorai.009G418900 Chr09 + View
Gossypium raimondii Gorai.006G167800 Chr06 + View
Hydrangea macrophylla Hma1.2p1_0111F.1_g054090 Hma1.2p1_0111F.1 - View
Hydrangea macrophylla Hma1.2p1_0614F.1_g189530 Hma1.2p1_0614F.1 + View
Malus domestica MD12G1120600 polyubiquitin 10 Chr12 + View
Malus domestica MD04G1100900 polyubiquitin 10 Chr04 + View
Medicago truncatula Medtr1g066390 pentameric polyubiquitin chr1 + View
Olea europaea Oeu001341.1 chr9 + View
Punica granatum PGR004G2673 NC_045131.1 + View
Prunus persica Prupe.6G238900 Pp06 + View
Populus trichocarpa Potri.006G129600 K04551//K08770 - ubiquitin B (UBB) // ubiquitin C (UBC) Chr06 + View
Populus trichocarpa Potri.016G088100 K08770 - ubiquitin C (UBC) Chr16 - View
Quercus lobata QL07p044818 7 + View
Rosa chinensis RcHm_v2.0_Chr3g0469291 RcHm_v2.0_Chr3 - View
Striga asiatica SGA_v2.0_scaffold126G33916 scaffold126 - View
Solanum pennellii Sopen10g035500 polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | ubiquitin 11 (UBQ11) | INVOLVED IN: protein modification process, response to salt stress, ubiquitin-dependent protein catabolic process | LOCATED IN: intracellular | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup , Ubiquitin conserved site , Ubiquitin , Ubiquitin supergroup | BEST Arabidopsis thaliana protein match is: Ubiquitin family protein ., Ubiquitin - Triticum aestivum (Wheat) Spenn-ch10 - View
Theobroma cacao Thecc.05G056900 Ubiquitin 4 Chromosome_5 - View