Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0034090 Zinc finger, C3HC4 type (RING finger) family protein isoform 1 [Theobroma cacao] Chr12 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G8160 LG-2 - View
Acer truncatum Atru.chr11.921 chr11 + View
Actinidia chinensis Actinidia12395 Lachesis_group14 - View
Actinidia chinensis Actinidia36626 Lachesis_group4 + View
Arabidopsis lyrata AL5G10830 scaffold_5 + View
Avicennia marina MSTRG.2126 ScioBoG_102834_HRSCAF_103055 + View
Arabidopsis thaliana AT2G01735 RING-finger protein for embryogenesi encodes a RING-H2 zinc finger protein essential for seed development. RING-finger protein for embryogenesis (RIE1)%3B FUNCTIONS IN: zinc ion binding%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 14 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: Zinc finger%2C C3HC4 type (RING finger) family protein (TAIR:AT1G68070.1)%3B Has 9688 Blast hits to 9662 proteins in 283 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2533%3B Fungi - 743%3B Plants - 5052%3B Viruses - 40%3B Other Eukaryotes - 1314 (source: NCBI BLink). Chr2 + View
Brassica carinata BcaC06g31281 ChrC06 - View
Brassica carinata BcaC06g34124 ChrC06 - View
Brassica napus C07p32380 C07 + View
Brassica oleracea BolC7t43774H C7 + View
Cannabis sativa CANSAT01G2064 NC_044373.1 - View
Cicer arietinum L. Ca_17276_v3 Ca_LG6_v3 - View
Corylus avellana Haze_10878 Similar to RIE1: E3 ubiquitin protein ligase RIE1 (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc11_g07290 E3 ubiquitin protein ligase RIE1 chr11 - View
Citrus clementina Ciclev10015731m.g scaffold_2 + View
Ceratophyllum demersum CDE05G2292 3 + View
Carpinus fangiana Cfa015024 Cfa06 - View
Cardamine hirsuta CARHR144300 Ring finger protein, putative Chr5 + View
Carya illinoinensis CiPaw.06G052100 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr06 - View
Citrullus lanatus ClCG01G006570 RING zinc finger protein-like CG_Chr01 - View
Carica papaya Cpa.g.sc2.192 supercontig_2 + View
Chenopodium quinoa AUR62014252 RIE1: E3 ubiquitin protein ligase RIE1 C_Quinoa_Scaffold_3035 - View
Capsella rubella Carub.0005s0068 PTHR14155//PTHR14155:SF85 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN PROTEIN LIGASE RIE1 scaffold_5 + View
Cucumis sativus L. CsaV3_5G028180 E3 ubiquitin protein ligase RIE1 chr5 - View
Daucus carota DCAR_007331 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv07727 GWHABJS00000018 - View
Davidia involucrata Dinv10474 GWHABJS00000008 + View
Durio zibethinus Duzib268G0706 NW_019168270.1 - View
Durio zibethinus Duzib251G0079 NW_019167971.1 - View
Durio zibethinus Duzib248G0550 NW_019168048.1 + View
Erigeron canadensis ECA234G0199 Conyza_canadensis_scaffold:4 - View
Eucalyptus grandis Eucgr.G02105 Chr07 + View
Erythranthe guttata Migut.E00483 scaffold_5 - View
Eutrema salsugineum Thhalv10004486m.g PTHR14155:SF85 - E3 UBIQUITIN PROTEIN LIGASE RIE1 scaffold_6 - View
Fragaria x ananassa FAN07G0922 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb4-4 - View
Fragaria x ananassa FAN17G0890 PTHR14155//PTHR14155:SF85 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN PROTEIN LIGASE RIE1 Fvb4-2 - View
Fragaria x ananassa FAN12G4292 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb4-3 - View
Fragaria vesca FvH4_4g33530 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb4 + View
Gossypium hirsutum Gohir.A01G146800 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A01 - View
Gossypium hirsutum Gohir.D01G140000 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED D01 + View
Gossypium hirsutum Gohir.A03G115500 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A03 + View
Gossypium hirsutum Gohir.A05G308800 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A05 + View
Gossypium hirsutum Gohir.D05G309500 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED D05 + View
Glycine max Glyma.02G085200 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm02 + View
Glycine max Glyma.05G238900 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm05 + View
Glycine max Glyma.07G170200 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm07 - View
Gossypium raimondii Gorai.002G172200 Chr02 + View
Helianthus annuus HanXRQChr15g0476721 Probable zinc finger, C3HC4 type (RING finger) family protein HanXRQChr15 + View
Lupinus albus Lalb_Chr09g0330871 K13148 - integrator complex subunit 11 [EC:3.1.27.-] (CPSF3L, INTS11) Lalb_Chr09 - View
Lotus japonicus Lj2g0019966 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED chr2 + View
Lotus japonicus Lj4g0011492 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED chr4 - View
Lactuca sativa Lsat_1_v5_gn_4_11541 Lsat_1_v8_lg_4 + View
Lactuca sativa Lsat_1_v5_gn_3_53501 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lsat_1_v8_lg_3 + View
Malus domestica MD16G1018400 Zinc finger Chr16 + View
Malus domestica MD13G1020200 Zinc finger Chr13 + View
Manihot esculenta Manes.15G134300 Chromosome15 - View
Medicago truncatula Medtr8g105330 zinc finger, C3HC4 type (RING finger) protein chr8 + View
Medicago truncatula Medtr1g032440 zinc finger (C3HC4-type RING finger) family protein chr1 + View
Olea europaea Oeu044009.1 chr8 - View
Petunia axillaris Peaxi162Scf00337g00817 Zinc finger, C3HC4 type (RING finger) family protein Peaxi162Scf00337 + View
Petunia axillaris Peaxi162Scf00937g00331 Zinc finger, C3HC4 type (RING finger) family protein Peaxi162Scf00937 + View
Prunus persica Prupe.1G333500 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Pp01 - View
Pisum sativum Psat6g046440 Zinc finger + C3HC4 RING-type chr6LG2 + View
Populus trichocarpa Potri.010G106300 PTHR14155//PTHR14155:SF85 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN PROTEIN LIGASE RIE1 Chr10 + View
Populus trichocarpa Potri.008G134900 PTHR14155//PTHR14155:SF85 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN PROTEIN LIGASE RIE1 Chr08 - View
Phaseolus vulgaris Phvul.003G019050 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr03 - View
Phaseolus vulgaris Phvul.002G321300 PTHR14155//PTHR14155:SF73 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr02 + View
Quercus lobata QL03p035915 3 - View
Rosa chinensis RcHm_v2.0_Chr4g0443041 RcHm_v2.0_Chr4 + View
Striga asiatica SGA_v2.0_scaffold23G10199 scaffold23 + View
Salix brachista Sabra10G0077700 GWHAAZH00000010 + View
Salix brachista Sabra08G0102900 GWHAAZH00000008 - View
Sechium edule Sed0000765 LG11 - View
Solanum lycopersicum Solyc04g008020.3 RING/U-box superfamily protein (AHRD V3.3 *** Q93YQ5_ARATH) SL4.0ch04 - View
Schrenkiella parvula Sp2g13185 PTHR14155//PTHR14155:SF85 - RING FINGER DOMAIN-CONTAINING // E3 UBIQUITIN PROTEIN LIGASE RIE1 ch2-4 + View
Solanum pennellii Sopen04g003160 Zinc finger, C3HC4 type (RING finger) family protein | FUNCTIONS IN: zinc ion binding | LOCATED IN: plasma membrane | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING-finger protein for embryogenesis Spenn-ch04 - View
Solanum tuberosum PGSC0003DMG401029469 Cleavage and polyadenylation specificity factor ST4.03ch04 - View
Selenicereus undatus Hund24933 Scaffold_3410 + View
Trochodendron aralioides TAR371G0295 group13 + View
Trochodendron aralioides TAR629G2712 group0 - View
Trochodendron aralioides TAR374G0461 group12 - View
Theobroma cacao Thecc.02G292700 Zinc finger Chromosome_2 - View
Tarenaya hassleriana THA.LOC104805080 E3 ubiquitin protein ligase RIE1 isoform X1 NW_010961290.1 - View
Trifolium pratense TPR.G36911 Tp57577_TGAC_v2_LG1 + View
Tripterygium wilfordii TWI77G0362 NC_052236.1 - View
Vigna mungo VMungo0251G1922 CM024069.1 + View
Vitis vinifera GSVIVG01011659001 chr1 - View
Zea mays Zm00001eb253840 Zm00001e015751 Protein binding protein 5 - View