Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0030716 PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Vitis vinifera] Chr3 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G11930 LG-1 - View
Acer truncatum Atru.chr3.3954 chr3 - View
Actinidia chinensis Actinidia08538 Lachesis_group24 + View
Arabidopsis lyrata AL8G36100 scaffold_8 - View
Arabidopsis lyrata AL5G25810 scaffold_5 - View
Avicennia marina MSTRG.18562 ScioBoG_22153_HRSCAF_22259 - View
Amaranthus hybridus Ah.15g098570 Pentatricopeptide repeat-containing protein At5g59600 AmaHy_arrow1_Scaffold_15 - View
Aquilegia oxysepala Aqoxy1G00884 CHR01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.A66RTB PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) arahy.Tifrunner.gnm1.Arahy.18 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.F9KBLE PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) arahy.Tifrunner.gnm1.Arahy.17 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.44R5YK PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.J8TVHJ PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) arahy.Tifrunner.gnm1.Arahy.08 - View
Arabidopsis thaliana AT3G46790 Tetratricopeptide repeat (TPR)-like superfamily protein Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-H subfamily) with 9 pentatricopeptide (PPR) repeats. The protein is involved the intergenic processing of chloroplast RNA between rps7 and ndhB%2C which is essential for ndhB translation. CHLORORESPIRATORY REDUCTION 2 (CRR2)%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1)%3B Has 36401 Blast hits to 13536 proteins in 261 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 92%3B Fungi - 72%3B Plants - 35786%3B Viruses - 0%3B Other Eukaryotes - 443 (source: NCBI BLink). Chr3 - View
Arabidopsis thaliana AT5G59600 Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Amborella trichopoda ATR0559G092 AmTr_v1.0_scaffold00012 - View
Brassica carinata BcaC09g49775 ChrC09 - View
Brassica carinata BcaC04g19753 ChrC04 + View
Brassica carinata BcaB08g36244 ChrB08 + View
Brassica napus A10p16790 A10 - View
Brassica oleracea BolC9t58059H C9 - View
Brassica oleracea BolC1t03247H C1 + View
Brassica rapa BraA10t43758Z A10 - View
Beta vulgaris EL10Ac7g16057 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr7_EL10_PGA_scaffold5 - View
Beta vulgaris EL10Ac2g03341 PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr2_EL10_PGA_scaffold6 + View
Capsicum annuum CAN.G141.7 PGAv.1.6.scaffold141 - View
Cicer arietinum L. Ca_15213_v3 Ca_LG5_v3 + View
Corylus avellana Haze_24138 Similar to PCMP-E1: Pentatricopeptide repeat-containing protein At5g59600 (Arabidopsis thaliana OX%3D3702) 6 + View
Coffea canephora Cc01_g13260 Pentatricopeptide repeat-containing protein At5g59600 chr1 - View
Citrus clementina Ciclev10029970m.g scaffold_8 - View
Ceratophyllum demersum CDE09G0830 7 + View
Carpinus fangiana Cfa011536 Cfa04 + View
Cardamine hirsuta CARHR154870 Pentatricopeptide repeat-containing protein Chr5 + View
Carya illinoinensis CiPaw.13G090300 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr13 + View
Citrullus lanatus ClCG02G019920 Pentatricopeptide repeat-containing protein, putative CG_Chr02 - View
Cucumis melo MELO3C035098.2 Pentatricopeptide repeat-containing protein chr11 - View
Corchorus olitorius COL.COLO4_18567 hypothetical protein AWUE01016476.1 - View
Carica papaya Cpa.g.sc81.102 supercontig_81 - View
Chenopodium quinoa AUR62020023 PCMP-E1: Pentatricopeptide repeat-containing protein At5g59600 C_Quinoa_Scaffold_2465 - View
Capsella rubella Carub.0008s2027 PF01535//PF04776//PF13041 - PPR repeat (PPR) // Protein of unknown function (DUF626) (DUF626) // PPR repeat family (PPR_2) scaffold_8 - View
Capsella rubella Carub.0005s1304 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_5 - View
Capsella rubella Carub.0004s2186 PTHR11240//PTHR11240:SF16 - RIBONUCLEASE T2 // RIBONUCLEASE 2 scaffold_4 + View
Cucumis sativus L. CsaV3_6G016620 Pentatricopeptide repeat-containing protein chr6 - View
Daucus carota DCAR_007423 hypothetical protein DCARv2_Chr2 + View
Daucus carota DCAR_005947 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv34492 GWHABJS00000009 - View
Davidia involucrata Dinv34274 GWHABJS00000007 - View
Durio zibethinus Duzib170G0515 NW_019167871.1 + View
Erigeron canadensis ECA232G1304 Conyza_canadensis_scaffold:2 + View
Erigeron canadensis ECA233G0866 Conyza_canadensis_scaffold:1 + View
Eucalyptus grandis Eucgr.J02000 Chr10 + View
Erythranthe guttata Migut.D02055 scaffold_4 - View
Eutrema salsugineum Thhalv10013206m.g PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_2 + View
Fragaria x ananassa FAN25G0228 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb3-1 + View
Fragaria x ananassa FAN21G2966 PF01535//PF03514//PF13041//PF14432 - PPR repeat (PPR) // GRAS domain family (GRAS) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb3-2 + View
Fragaria x ananassa FAN16G1548 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb3-3 - View
Fragaria x ananassa FAN11G1964 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Fvb3-4 + View
Fragaria vesca FvH4_3g36900 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Fvb3 - View
Gossypium hirsutum Gohir.D13G232200 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) D13 + View
Gossypium hirsutum Gohir.D05G094000 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) D05 + View
Gossypium hirsutum Gohir.A13G226900 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) A13 + View
Gossypium hirsutum Gohir.A05G093500 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) A05 + View
Gossypium hirsutum Gohir.D09G155700 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) D09 + View
Gossypium hirsutum Gohir.D04G063600 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) D04 + View
Gossypium hirsutum Gohir.A03G044900 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) A03 - View
Gossypium hirsutum Gohir.A05G348900 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) A05 - View
Glycine max Glyma.14G066100 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm14 - View
Glycine max Glyma.11G136400 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm11 + View
Gossypium raimondii Gorai.009G097000 Chr09 + View
Gossypium raimondii Gorai.012G071200 Chr12 + View
Gossypium raimondii Gorai.003G128500 Chr03 + View
Gossypium raimondii Gorai.013G263000 Chr13 + View
Helianthus annuus HanXRQChr12g0374101 Putative pentatricopeptide repeat HanXRQChr12 + View
Helianthus annuus HanXRQChr16g0500581 Probable tetratricopeptide repeat (TPR)-like superfamily protein HanXRQChr16 - View
Hydrangea macrophylla Hma1.2p1_0757F.1_g213340 Hma1.2p1_0757F.1 + View
Lotus japonicus Lj3g0025296 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) chr3 + View
Magnolia biondii MBI05_g35631_MAGBIO AED:0.16 Chr05 + View
Malus domestica MD11G1095500 Pentatricopeptide repeat (PPR) superfamily protein Chr11 - View
Malus domestica MD03G1086700 Tetratricopeptide repeat (TPR)-like superfamily protein Chr03 + View
Medicago truncatula Medtr4g064770 pentatricopeptide (PPR) repeat protein chr4 - View
Nelumbo nucifera Nn2g13392 chr2 - View
Nicotiana tabacum Nitab4.5_0000102g0330 Pentatricopeptide repeat, Tetratricopeptide-like helical Nitab4.5_0000102 - View
Olea europaea Oeu007658.1 scaffold1280 - View
Oryza sativa ssp. japonica Os03g0271300 Similar to Pentatricopeptide repeat protein PPR868-14. chr03 + View
Oryza sativa ssp. japonica Os05g0455900 Pentatricopeptide repeat domain containing protein. chr05 + View
Petunia axillaris Peaxi162Scf00265g00012 Pentatricopeptide repeat-containing protein Peaxi162Scf00265 - View
Punica granatum PGR119G0502 NC_045132.1 - View
Punica granatum PGR031G0122 NC_045127.1 - View
Prunus persica Prupe.6G071000 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Pp06 - View
Papaver somniferum PSO063G0685 NC_039364.1 - View
Populus trichocarpa Potri.006G090900 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Chr06 - View
Populus trichocarpa Potri.001G243800 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr01 - View
Populus trichocarpa Potri.009G035100 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr09 + View
Phaseolus vulgaris Phvul.011G062000 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr11 + View
Quercus lobata QL01p030416 1 - View
Rosa chinensis RcHm_v2.0_Chr5g0066131 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim13G0077500 chr13 - View
Salix brachista Sabra16G0148000 GWHAAZH00000016 - View
Salix brachista Sabra06G0068700 GWHAAZH00000006 - View
Simmondsia chinensis Sc21g0006000 GWHAASQ00000021 - View
Sechium edule Sed0007330 LG01 - View
Sapria himalayana SHI05910 scaffold2_22354274 + View
Solanum lycopersicum Solyc06g005690.3 Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A2G2WHX5_CAPBA) SL4.0ch06 - View
Schrenkiella parvula Sp5g14920 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) ch5-1 + View
Schrenkiella parvula Sp6g21290 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) ch6-6 - View
Solanum pennellii Sopen06g001670 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch06 - View
Solanum tuberosum PGSC0003DMG400002145 Pentatricopeptide repeat-containing protein ST4.03ch06 - View
Selenicereus undatus Hund04924 Scaffold_19641 - View
Trochodendron aralioides TAR623G0660 group7 - View
Trochodendron aralioides TAR560G0001 contig394 + View
Tarenaya hassleriana THA.LOC104814883 pentatricopeptide repeat-containing protein At5g59600 NW_010965541.1 - View
Trifolium pratense TPR.G23592 Tp57577_TGAC_v2_LG3 + View
Vaccinium macrocarpon vmacro03032 Similar to PCMP-H40: Pentatricopeptide repeat-containing protein At1g11290, chloroplastic (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01024915001 chr6 - View
Zea mays Zm00001eb012150 Zm00001e001200 Pentatricopeptide repeat-containing protein 1 + View