Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0004260 PREDICTED: U-box domain-containing protein 43 [Vitis vinifera] Chr4 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G4940 LG-7 + View
Aethionema arabicum Aa31LG4G6460 LG-4 + View
Acer truncatum Atru.chr13.107 chr13 - View
Actinidia chinensis Actinidia17060 Lachesis_group28 - View
Actinidia chinensis Actinidia15509 Lachesis_group26 - View
Arabidopsis lyrata AL2G36490 scaffold_2 + View
Arabidopsis lyrata AL1G33780 scaffold_1 + View
Avicennia marina MSTRG.24920 ScioBoG_4119_HRSCAF_4138 - View
Avicennia marina MSTRG.22093 ScioBoG_3008_HRSCAF_3015 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.K099DC PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED arahy.Tifrunner.gnm1.Arahy.17 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.F5PR0Y PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED arahy.Tifrunner.gnm1.Arahy.08 + View
Arabidopsis thaliana AT1G76390 ARM repeat superfamily protein ARM repeat superfamily protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C binding%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: senescence-associated E3 ubiquitin ligase 1 (TAIR:AT1G20780.1)%3B Has 2889 Blast hits to 2662 proteins in 212 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 333%3B Fungi - 292%3B Plants - 2003%3B Viruses - 3%3B Other Eukaryotes - 232 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G20780 senescence-associated E3 ubiquitin ligase 1 Encodes a protein containing a U-box and an ARM domain. Homozygous mutant seedlings have a seedling lethal phenotype with widespread cell death lesions throughout the cotyledons and roots. senescence-associated E3 ubiquitin ligase 1 (SAUL1)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: regulation of chlorophyll catabolic process%2C regulation of chlorophyll biosynthetic process%2C leaf senescence%2C regulation of abscisic acid biosynthetic process%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G76390.2)%3B Has 2790 Blast hits to 2660 proteins in 201 species: Archae - 0%3B Bacteria - 20%3B Metazoa - 434%3B Fungi - 161%3B Plants - 1969%3B Viruses - 3%3B Other Eukaryotes - 203 (source: NCBI BLink). Chr1 + View
Amborella trichopoda ATR0807G147 AmTr_v1.0_scaffold00044 - View
Brassica carinata BcaC08g47256 ChrC08 - View
Brassica carinata BcaB03g12854 ChrB03 - View
Brassica carinata BcaC08g47136 ChrC08 + View
Brassica carinata BcaC06g34835 ChrC06 + View
Brassica carinata BcaC07g39052 ChrC07 + View
Brassica napus C07p22810 C07 - View
Brassica napus A07p15480 A07 - View
Brassica napus A08p29260 A08 - View
Brassica napus C08p20360 C08 + View
Brassica napus C06p50580 C06 + View
Brassica napus A07p42010 A07 + View
Brassica oleracea BolC8t49664H C8 + View
Brassica oleracea BolC6t40083H C6 + View
Brassica oleracea BolC7t42819H C7 - View
Brassica rapa BraA07t29289Z A07 - View
Brassica rapa BraA07t31731Z A07 + View
Brassica rapa BraA08t34861Z A08 - View
Beta vulgaris EL10Ac1g01912 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Chr1_EL10_PGA_scaffold3 - View
Capsicum annuum CAN.G311.133 PGAv.1.6.scaffold311 + View
Cicer arietinum L. Ca_15402_v3 Ca_LG5_v3 - View
Corylus avellana Haze_22831 Similar to PUB43: U-box domain-containing protein 43 (Arabidopsis thaliana OX%3D3702) 3 + View
Coffea canephora Cc10_g00490 U-box domain-containing protein 43 chr10 - View
Citrus clementina Ciclev10000306m.g scaffold_5 + View
Ceratophyllum demersum CDE02G0112 1 + View
Ceratophyllum demersum CDE04G1286 2 + View
Ceratophyllum demersum CDE05G1206 3 - View
Carpinus fangiana Cfa014113 Cfa05 + View
Cardamine hirsuta CARHR021220 U-box domain-containing protein 44 Chr1 + View
Cardamine hirsuta CARHR069940 U-box domain-containing protein 43 Chr2 + View
Carya illinoinensis CiPaw.08G075500 PTHR22849//PTHR22849:SF4 - WDSAM1 PROTEIN // U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Chr08 + View
Carya illinoinensis CiPaw.07G136000 PTHR22849//PTHR22849:SF4 - WDSAM1 PROTEIN // U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Chr07 - View
Citrullus lanatus ClCG08G009290 Armadillo/beta-catenin repeat family protein CG_Chr08 - View
Cucumis melo MELO3C026527.2 RING-type E3 ubiquitin transferase chr03 - View
Carica papaya Cpa.g.sc26.164 supercontig_26 - View
Chenopodium quinoa AUR62035142 PUB43: U-box domain-containing protein 43 C_Quinoa_Scaffold_2624 + View
Capsella rubella Carub.0001s2023 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED scaffold_1 + View
Capsella rubella Carub.0002s2329 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED scaffold_2 + View
Cucumis sativus L. CsaV3_6G031420 RING-type E3 ubiquitin transferase chr6 - View
Daucus carota DCAR_016785 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv31965 GWHABJS00000002 + View
Durio zibethinus Duzib093G0559 NW_019167937.1 + View
Durio zibethinus Duzib041G0106 NW_019167826.1 - View
Durio zibethinus Duzib116G0565 NW_019167949.1 - View
Erigeron canadensis ECA232G2304 Conyza_canadensis_scaffold:2 - View
Erigeron canadensis ECA233G6114 Conyza_canadensis_scaffold:1 + View
Eucalyptus grandis Eucgr.F01789 Chr06 + View
Erythranthe guttata Migut.C00366 scaffold_3 - View
Erythranthe guttata Migut.N02970 scaffold_14 + View
Eutrema salsugineum Thhalv10018134m.g PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED scaffold_9 - View
Eutrema salsugineum Thhalv10006866m.g scaffold_5 - View
Fragaria x ananassa FAN04G2064 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Fvb5-4 + View
Fragaria x ananassa FAN13G0939 PTHR22849//PTHR22849:SF4 - WDSAM1 PROTEIN // U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Fvb5-2 + View
Fragaria x ananassa FAN18G2847 PTHR22849//PTHR22849:SF4 - WDSAM1 PROTEIN // U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Fvb5-1 + View
Fragaria x ananassa FAN08G3181 PTHR22849//PTHR22849:SF4 - WDSAM1 PROTEIN // U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Fvb5-3 - View
Fragaria vesca FvH4_5g25630 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Fvb5 + View
Gossypium hirsutum Gohir.A01G103600 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED A01 - View
Gossypium hirsutum Gohir.D01G088900 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED D01 - View
Glycine max Glyma.04G016500 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Gm04 - View
Glycine max Glyma.06G016500 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Gm06 - View
Gossypium raimondii Gorai.002G114600 Chr02 - View
Lupinus albus Lalb_Chr23g0265671 PTHR22849//PTHR22849:SF4 - WDSAM1 PROTEIN // U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Lalb_Chr23 - View
Lupinus albus Lalb_Chr11g0061491 PTHR22849//PTHR22849:SF4 - WDSAM1 PROTEIN // U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Lalb_Chr11 - View
Lonicera japonica Lj4A7G82 GWHAAZE00000004 - View
Lactuca sativa Lsat_1_v5_gn_8_27020 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Lsat_1_v8_lg_8 + View
Lactuca sativa Lsat_1_v5_gn_9_45700 PF04564//PF13646 - U-box domain (U-box) // HEAT repeats (HEAT_2) Lsat_1_v8_lg_9 - View
Magnolia biondii MBI08_g37960_MAGBIO AED:0.02 Chr08 - View
Malus domestica MD06G1007200 ARM repeat superfamily protein Chr06 - View
Manihot esculenta Manes.05G124600 Chromosome05 - View
Medicago truncatula Medtr3g115670 senescence-associated E3 ubiquitin ligase chr3 + View
Nelumbo nucifera Nn5g31002 chr5 + View
Nicotiana tabacum Nitab4.5_0009646g0020 Armadillo-type fold, Armadillo, Zinc finger, RING/FYVE/PHD-type, U box domain, Armadillo-like helical Nitab4.5_0009646 + View
Petunia axillaris Peaxi162Scf00680g00115 Armadillo/beta-catenin-like repeat family protein Peaxi162Scf00680 + View
Punica granatum PGR083G2569 NC_045133.1 + View
Prunus persica Prupe.5G009100 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Pp05 - View
Pisum sativum Psat5g009760 U-box domain chr5LG3 - View
Papaver somniferum PSO170G5156 NC_039360.1 - View
Papaver somniferum PSO210G2751 NC_039359.1 + View
Populus trichocarpa Potri.005G253400 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Chr05 + View
Populus trichocarpa Potri.002G007800 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Chr02 - View
Phaseolus vulgaris Phvul.009G012400 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED Chr09 + View
Quercus lobata QL02p015129 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr7g0215921 RcHm_v2.0_Chr7 + View
Salvia bowleyana SalBow7G1015 GWHASIU00000005 - View
Salvia bowleyana SalBow6G6750 GWHASIU00000002 - View
Salix brachista Sabra05G0196500 GWHAAZH00000005 + View
Salix brachista Sabra02G0006000 GWHAAZH00000002 - View
Simmondsia chinensis Sc15g0004220 GWHAASQ00000015 - View
Sechium edule Sed0012215 LG08 + View
Solanum lycopersicum Solyc04g082570.3 RING-type E3 ubiquitin transferase (AHRD V3.3 *** A0A2G2X1J2_CAPBA) SL4.0ch04 + View
Schrenkiella parvula Sp1g18480 PTHR22849//PTHR22849:SF4 - WDSAM1 PROTEIN // U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED ch1-1 + View
Schrenkiella parvula Sp5g31540 PTHR22849:SF4 - U-BOX DOMAIN-CONTAINING PROTEIN 43-RELATED ch5-7 + View
Solanum pennellii Sopen04g036200 Encodes a protein containing a U-box and an ARM domain. | senescence-associated E3 ubiquitin ligase 1 (SAUL1) | FUNCTIONS IN: ubiquitin-protein ligase activity | INVOLVED IN: regulation of chlorophyll catabolic process, regulation of chlorophyll biosynthetic process, leaf senescence, regulation of abscisic acid biosynthetic process | LOCATED IN: plasma membrane | EXPRESSED IN: 9 plant structures | EXPRESSED DURING: 7 growth stages | CONTAINS InterPro DOMAIN/s: U box domain , Armadillo-like helical , Armadillo , Armadillo-type fold | BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein Spenn-ch04 + View
Solanum tuberosum PGSC0003DMG400009912 Ubiquitin-protein ligase ST4.03ch04 + View
Trochodendron aralioides TAR376G1115 group14 + View
Trochodendron aralioides TAR628G0492 group5 + View
Theobroma cacao Thecc.08G062500 ARM repeat superfamily protein Chromosome_8 + View
Tarenaya hassleriana THA.LOC104809865 U-box domain-containing protein 44 isoform X1 NW_010960187.1 + View
Trifolium pratense TPR.G38122 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI56G1487 NC_052242.1 + View
Tripterygium wilfordii TWI12G1228 NC_052243.1 - View
Vaccinium macrocarpon vmacro21787 Similar to PUB43: U-box domain-containing protein 43 (Arabidopsis thaliana OX%3D3702) chr10_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1309G0239 CM024072.1 + View
Vitis vinifera GSVIVG01013395001 chr18 - View