Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0018665 Breast cancer associated RING 1, putative isoform 4 [Theobroma cacao] Chr3 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G15650 LG-5 - View
Aethionema arabicum Aa31LG10G16500 LG-10 - View
Aethionema arabicum Aa31LG8G3740 LG-8 - View
Arabidopsis lyrata AL5G45660 scaffold_5 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.QBM4VB PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) arahy.Tifrunner.gnm1.Arahy.02 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.YMF2MP PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) arahy.Tifrunner.gnm1.Arahy.04 + View
Arabidopsis thaliana AT3G62890 Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein%3B FUNCTIONS IN: binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: F mature embryo stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%2C D bilateral stage%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G40405.1)%3B Has 35241 Blast hits to 13566 proteins in 229 species: Archae - 0%3B Bacteria - 18%3B Metazoa - 37%3B Fungi - 30%3B Plants - 34726%3B Viruses - 0%3B Other Eukaryotes - 430 (source: NCBI BLink). Chr3 + View
Amborella trichopoda ATR0693G186 AmTr_v1.0_scaffold00003 + View
Capsicum annuum CAN.G472.8 PGAv.1.6.scaffold472 + View
Cicer arietinum L. Ca_20217_v3 Ca_LG6_v3 + View
Cicer arietinum L. Ca_19946_v3 Ca_LG6_v3 + View
Cardamine hirsuta CARHR173160 Pentatricopeptide repeat (PPR) superfamily protein Chr5 + View
Carya illinoinensis CiPaw.08G095000 K03452 - magnesium/proton exchanger (MHX) Chr08 - View
Corchorus olitorius COL.COLO4_23342 hypothetical protein AWUE01018185.1 - View
Carica papaya Cpa.g.sc48.89 supercontig_48 + View
Daucus carota DCAR_012397 hypothetical protein DCARv2_Chr3 + View
Davidia involucrata Dinv19687 GWHABJS00000007 - View
Eucalyptus grandis Eucgr.H01117 Chr08 + View
Eucalyptus grandis Eucgr.K03486 Chr11 + View
Eutrema salsugineum Thhalv10006495m.g PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_19 - View
Fragaria x ananassa FAN20G2858 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb2-3 + View
Fragaria x ananassa FAN15G1657 K03452 - magnesium/proton exchanger (MHX) Fvb2-4 + View
Fragaria x ananassa FAN24G3412 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb2-2 - View
Fragaria vesca FvH4_2g25760 K03452 - magnesium/proton exchanger (MHX) Fvb2 + View
Gossypium hirsutum Gohir.A12G013500 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) A12 + View
Gossypium hirsutum Gohir.D12G014300 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) D12 + View
Glycine max Glyma.10G018100 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Gm10 - View
Gossypium raimondii Gorai.008G014300 Chr08 + View
Hydrangea macrophylla Hma1.2p1_0494F.1_g165200 Hma1.2p1_0494F.1 + View
Lupinus albus Lalb_Chr02g0146371 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lalb_Chr02 + View
Lupinus albus Lalb_Chr04g0259771 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Lalb_Chr04 - View
Lupinus albus Lalb_Chr20g0121311 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Lalb_Chr20 - View
Lotus japonicus Lj6g0002092 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) chr6 - View
Lonicera japonica Lj1C24G18 GWHAAZE00000001 - View
Malus domestica MD11G1309500 Pentatricopeptide repeat (PPR) superfamily protein Chr11 - View
Medicago truncatula Medtr1g088440 PPR superfamily protein, putative chr1 - View
Nelumbo nucifera Nn3g21503 chr3 - View
Oryza sativa ssp. japonica Os05g0153400 Pentatricopeptide repeat domain containing protein. chr05 + View
Oryza sativa ssp. japonica Os03g0828300 Similar to (1-4)-beta-mannan endohydrolase-like protein. chr03 + View
Oryza sativa ssp. japonica Os06g0199200 Similar to smr domain containing protein. Smr protein/MutS2 C-terminal domain containing protein. chr06 - View
Petunia axillaris Peaxi162Scf00001g00427 Pentatricopeptide repeat-containing protein Peaxi162Scf00001 - View
Prunus persica Prupe.6G319200 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 Pp06 - View
Prunus persica Prupe.8G261800 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Pp08 + View
Pisum sativum Psat6g165360 DYW family of nucleic acid deaminases chr6LG2 - View
Phaseolus vulgaris Phvul.007G146900 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr07 + View
Phaseolus vulgaris Phvul.009G249300 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr09 - View
Quercus lobata QL12p028434 12 - View
Rhododendron simsii Rhsim13G0010000 chr13 - View
Solanum lycopersicum Solyc09g075170.1 Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A2G2W0G2_CAPBA) SL4.0ch09 + View
Schrenkiella parvula Sp5g00630 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) ch5-1 - View
Solanum pennellii Sopen09g029990 Pentatricopeptide repeat (PPR) superfamily protein | FUNCTIONS IN: binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 7 plant structures | EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat , Tetratricopeptide-like helical | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch09 + View
Solanum tuberosum PGSC0003DMG400031837 Pentatricopeptide repeat-containing protein ST4.03ch09 + View
Trochodendron aralioides TAR362G1342 group17 - View
Theobroma cacao Thecc.01G300900 Pentatricopeptide repeat (PPR) superfamily protein Chromosome_1 + View
Tarenaya hassleriana THA.LOC104815925 pentatricopeptide repeat-containing protein At3g12770 NW_010965696.1 - View
Trifolium pratense TPR.G4102 Tp57577_TGAC_v2_LG6 + View
Tripterygium wilfordii TWI23G0584 NC_052239.1 - View
Vaccinium macrocarpon vmacro02448 Similar to PCMP-H82: Pentatricopeptide repeat-containing protein At3g62890 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro08126 Similar to PCMP-H1: Pentatricopeptide repeat-containing protein At4g15720 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1309G0570 CM024072.1 + View
Vigna mungo VMungo0720G1014 CM024071.1 + View
Vitis vinifera GSVIVG01028022001 chr7 + View