Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0036711 PREDICTED: polygalacturonase At1g48100 [Vitis vinifera] Chr9 - View
CSS0011409 glycoside hydrolase family 28 family protein [Populus trichocarpa] Chr11 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G5630 LG-10 - View
Actinidia chinensis Actinidia02517 Lachesis_group10 + View
Actinidia chinensis Actinidia21365 Lachesis_group19 - View
Actinidia chinensis Actinidia07521 Lachesis_group18 + View
Actinidia chinensis Actinidia16889 Lachesis_group12 + View
Arabidopsis lyrata AL1G54670 scaffold_1 + View
Avicennia marina MSTRG.10177 ScioBoG_12795_HRSCAF_12848 + View
Aquilegia oxysepala Aqoxy5G02749 CHR05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.CCG5WH PF13229 - Right handed beta helix region (Beta_helix) arahy.Tifrunner.gnm1.Arahy.14 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.DB5XKD PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.SYXA4Q PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN arahy.Tifrunner.gnm1.Arahy.16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.09Q3UX PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN arahy.Tifrunner.gnm1.Arahy.09 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.08SQ5V PF13229 - Right handed beta helix region (Beta_helix) arahy.Tifrunner.gnm1.Arahy.04 - View
Arabidopsis thaliana AT1G48100 Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein%3B FUNCTIONS IN: polygalacturonase activity%3B INVOLVED IN: carbohydrate metabolic process%3B EXPRESSED IN: 19 plant structures%3B EXPRESSED DURING: 10 growth stages%3B CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050)%2C Pectin lyase fold (InterPro:IPR012334)%2C Glycoside hydrolase%2C family 28 (InterPro:IPR000743)%2C Parallel beta-helix repeat (InterPro:IPR006626)%3B BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G02460.1)%3B Has 4526 Blast hits to 4502 proteins in 576 species: Archae - 8%3B Bacteria - 1381%3B Metazoa - 30%3B Fungi - 1439%3B Plants - 1518%3B Viruses - 5%3B Other Eukaryotes - 145 (source: NCBI BLink). Chr1 + View
Amborella trichopoda ATR0693G423 AmTr_v1.0_scaffold00003 + View
Brassica carinata BcaB07g33790 ChrB07 - View
Brassica napus C06p02510 C06 + View
Brassica napus A06p04700 A06 - View
Brassica oleracea BolC6t35379H C6 + View
Brassica rapa BraA06t23673Z A06 - View
Beta vulgaris EL10As5g23590 PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Scaffold_0005 + View
Beta vulgaris EL10Ac3g06282 3.2.1.15 - Polygalacturonase / Pectinase Chr3_EL10_PGA_scaffold7 + View
Capsicum annuum CAN.G100.20 PGAv.1.6.scaffold100 - View
Cannabis sativa CANSAT78G0934 NC_044376.1 + View
Cicer arietinum L. Ca_00940_v3 Ca_LG1_v3 - View
Cicer arietinum L. Ca_10257_v3 Ca_LG4_v3 + View
Corylus avellana Haze_00815 Similar to At1g48100: Polygalacturonase At1g48100 (Arabidopsis thaliana OX%3D3702) 1 - View
Citrus clementina Ciclev10024556m.g scaffold_3 - View
Citrus clementina Ciclev10004899m.g scaffold_9 - View
Ceratophyllum demersum CDE02G2955 1 + View
Ceratophyllum demersum CDE08G0755 6 + View
Ceratophyllum demersum CDE09G0551 7 + View
Carpinus fangiana Cfa004868 Cfa02 - View
Carpinus fangiana Cfa015700 Cfa06 + View
Cardamine hirsuta CARHR037740 Polygalacturonase, putative Chr1 + View
Carya illinoinensis CiPaw.01G132600 PF13229 - Right handed beta helix region (Beta_helix) Chr01 - View
Carya illinoinensis CiPaw.02G071600 3.2.1.15 - Polygalacturonase / Pectinase Chr02 - View
Carya illinoinensis CiPaw.07G122300 PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Chr07 - View
Carya illinoinensis CiPaw.07G033900 PTHR31375:SF13 - PECTIN LYASE-LIKE PROTEIN Chr07 - View
Citrullus lanatus ClCG06G004310 Pectin lyase-like superfamily protein LENGTH=475 CG_Chr06 - View
Citrullus lanatus ClCG09G004790 Pectin lyase-like superfamily protein LENGTH=491 CG_Chr09 + View
Citrullus lanatus ClCG10G011720 Pectin lyase-like superfamily protein LENGTH=491 CG_Chr10 - View
Cucumis melo MELO3C021245.2 polygalacturonase At1g48100 chr11 + View
Cucumis melo MELO3C023627.2 polygalacturonase At1g48100-like chr01 - View
Corchorus olitorius COL.COLO4_05495 Glycoside hydrolase%2C family 28 AWUE01012366.1 - View
Carica papaya Cpa.g.sc146.54 supercontig_146 + View
Chenopodium quinoa AUR62011744 At1g48100: Polygalacturonase At1g48100 C_Quinoa_Scaffold_2008 + View
Chenopodium quinoa AUR62030002 At1g48100: Polygalacturonase At1g48100 C_Quinoa_Scaffold_1447 + View
Chenopodium quinoa AUR62024577 At1g48100: Polygalacturonase At1g48100 C_Quinoa_Scaffold_1992 + View
Chenopodium quinoa AUR62002580 At1g48100: Polygalacturonase At1g48100 C_Quinoa_Scaffold_4480 + View
Capsella rubella Carub.0001s3720 3.2.1.15 - Polygalacturonase / Pectinase scaffold_1 + View
Cucumis sativus L. CsaV3_6G000090 Polygalacturonase chr6 + View
Daucus carota DCAR_002533 hypothetical protein DCARv2_Chr1 + View
Daucus carota DCAR_026962 hypothetical protein DCARv2_Chr8 + View
Davidia involucrata Dinv24493 GWHABJS00000005 + View
Davidia involucrata Dinv29543 GWHABJS00000014 - View
Durio zibethinus Duzib138G1018 NW_019167893.1 + View
Durio zibethinus Duzib151G0005 NW_019167904.1 + View
Durio zibethinus Duzib177G0822 NW_019168004.1 - View
Eucalyptus grandis Eucgr.H04092 Chr08 + View
Eutrema salsugineum Thhalv10011452m.g 3.2.1.15 - Polygalacturonase / Pectinase scaffold_7 - View
Fragaria x ananassa FAN07G2225 3.2.1.15 - Polygalacturonase / Pectinase Fvb4-4 - View
Fragaria x ananassa FAN23G1929 PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Fvb1-3 - View
Fragaria x ananassa FAN09G4300 PTHR31375//PTHR31375:SF13 - FAMILY NOT NAMED // PECTIN LYASE-LIKE PROTEIN Fvb6-2 + View
Fragaria x ananassa FAN12G1354 PF05347//PF12708 - Complex 1 protein (LYR family) (Complex1_LYR) // Pectate lyase superfamily protein (Pectate_lyase_3) Fvb4-3 - View
Fragaria x ananassa FAN19G2106 PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Fvb1-4 - View
Fragaria x ananassa FAN17G0184 3.2.1.15 - Polygalacturonase / Pectinase Fvb4-2 - View
Fragaria vesca FvH4_4g20990 3.2.1.15 - Polygalacturonase / Pectinase Fvb4 + View
Fragaria vesca FvH4_1g26650 PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Fvb1 - View
Gossypium hirsutum Gohir.A02G085800 3.2.1.15 - Polygalacturonase / Pectinase A02 + View
Gossypium hirsutum Gohir.D02G062100 3.2.1.15 - Polygalacturonase / Pectinase D02 + View
Gossypium hirsutum Gohir.A12G122100 PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN A12 + View
Gossypium hirsutum Gohir.D12G125700 PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN D12 + View
Gossypium hirsutum Gohir.D09G242400 3.2.1.15 - Polygalacturonase / Pectinase D09 + View
Gossypium hirsutum Gohir.A09G241700 3.2.1.15 - Polygalacturonase / Pectinase A09 + View
Gossypium hirsutum Gohir.D11G111900 PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN D11 + View
Glycine max Glyma.10G010000 PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Gm10 + View
Glycine max Glyma.15G136700 PF13229 - Right handed beta helix region (Beta_helix) Gm15 - View
Glycine max Glyma.09G031600 PF13229 - Right handed beta helix region (Beta_helix) Gm09 - View
Gossypium raimondii Gorai.005G069900 Chr05 + View
Gossypium raimondii Gorai.006G266100 Chr06 + View
Gossypium raimondii Gorai.008G136700 Chr08 + View
Lupinus albus Lalb_Chr18g0058451 3.2.1.15 - Polygalacturonase / Pectinase Lalb_Chr18 - View
Lupinus albus Lalb_Chr15g0089021 PF13229 - Right handed beta helix region (Beta_helix) Lalb_Chr15 - View
Lupinus albus Lalb_Chr02g0147651 PTHR31375:SF13 - PECTIN LYASE-LIKE PROTEIN Lalb_Chr02 + View
Lupinus albus Lalb_Chr02g0146991 PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Lalb_Chr02 - View
Lotus japonicus Lj6g0013900 3.2.1.15 - Polygalacturonase / Pectinase chr6 - View
Lonicera japonica Lj6A698T108 GWHAAZE00000006 + View
Lonicera japonica Lj3C837T5 GWHAAZE00000003 + View
Lactuca sativa Lsat_1_v5_gn_1_40460 Lsat_1_v8_lg_1 - View
Magnolia biondii MBI18_g25674_MAGBIO AED:0.10 Chr18 - View
Malus domestica MD04G1189500 Pectin lyase-like superfamily protein Chr04 + View
Malus domestica MD16G1140500 Pectin lyase-like superfamily protein Chr16 - View
Malus domestica MD09G1287300 Pectin lyase-like superfamily protein Chr09 + View
Malus domestica MD13G1146600 Pectin lyase-like superfamily protein Chr13 - View
Malus domestica MD17G1279500 Pectin lyase-like superfamily protein Chr17 + View
Manihot esculenta Manes.05G011500 Chromosome05 - View
Manihot esculenta Manes.01G232400 Chromosome01 - View
Manihot esculenta Manes.03G209900 Chromosome03 + View
Medicago truncatula Medtr2g032710 polygalacturonase plant-like protein chr2 - View
Medicago truncatula Medtr1g086390 polygalacturonase/glycoside hydrolase family protein chr1 + View
Nelumbo nucifera Nn3g21854 chr3 - View
Nicotiana tabacum Nitab4.5_0000222g0230 Pectin lyase fold, Parallel beta-helix repeat, Pectin lyase fold/virulence factor, Glycoside hydrolase, family 28 Nitab4.5_0000222 + View
Olea europaea Oeu044744.1 chr16 - View
Olea europaea Oeu012202.1 chr17 + View
Oryza sativa ssp. japonica Os01g0329300 Pectin lyase fold domain containing protein. chr01 + View
Punica granatum PGR004G0043 NC_045131.1 - View
Prunus persica Prupe.6G307200 PTHR31375:SF13 - PECTIN LYASE-LIKE PROTEIN Pp06 + View
Prunus persica Prupe.3G005900 PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Pp03 - View
Prunus persica Prupe.1G110100 Pp01 - View
Papaver somniferum PSO210G1727 NC_039359.1 + View
Papaver somniferum PSO170G5565 NC_039360.1 + View
Populus trichocarpa Potri.002G190600 PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Chr02 + View
Populus trichocarpa Potri.013G005000 PTHR31375:SF13 - PECTIN LYASE-LIKE PROTEIN Chr13 + View
Populus trichocarpa Potri.010G152000 3.2.1.15 - Polygalacturonase / Pectinase Chr10 + View
Populus trichocarpa Potri.008G100500 3.2.1.15 - Polygalacturonase / Pectinase Chr08 - View
Phaseolus vulgaris Phvul.007G211400 PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Chr07 + View
Phaseolus vulgaris Phvul.006G121300 3.2.1.15 - Polygalacturonase / Pectinase Chr06 + View
Quercus lobata QL03p008969 3 - View
Quercus lobata QL06p013572 6 + View
Rosa chinensis RcHm_v2.0_Chr4g0426531 RcHm_v2.0_Chr4 + View
Rosa chinensis RcHm_v2.0_Chr3g0486841 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim02G0001000 chr02 - View
Striga asiatica SGA_v2.0_scaffold80G25703 scaffold80 + View
Salvia bowleyana SalBow6G1473 GWHASIU00000002 + View
Salvia bowleyana SalBow8G5053 GWHASIU00000004 - View
Salix brachista Sabra13G0004000 GWHAAZH00000013 + View
Salix brachista Sabra08G0076000 GWHAAZH00000008 - View
Salix brachista Sabra02G0164900 GWHAAZH00000002 - View
Salix brachista Sabra10G0117100 GWHAAZH00000010 + View
Simmondsia chinensis Sc19g0002350 GWHAASQ00000019 - View
Simmondsia chinensis Sc17g0000250 GWHAASQ00000017 - View
Sechium edule Sed0004566 LG09 - View
Sechium edule Sed0006219 LG09 + View
Solanum lycopersicum Solyc01g100980.4 Pectin lyase-like superfamily protein (AHRD V3.3 *** A0A2U1LK87_ARTAN) SL4.0ch01 - View
Schrenkiella parvula Sp1g35060 3.2.1.15 - Polygalacturonase / Pectinase ch1-2 + View
Solanum tuberosum PGSC0003DMG400002749 Polygalacturonase ST4.03ch01 - View
Solanum tuberosum PGSC0003DMG400005204 Polygalacturonase ST4.03ch01 - View
Trochodendron aralioides TAR362G0230 group17 - View
Trochodendron aralioides TAR629G3277 group0 - View
Theobroma cacao Thecc.04G308700 Pectin lyase-like superfamily protein Chromosome_4 + View
Theobroma cacao Thecc.01G321100 Pectin lyase-like superfamily protein Chromosome_1 - View
Theobroma cacao Thecc.05G327300 Pectin lyase-like superfamily protein Chromosome_5 - View
Tarenaya hassleriana THA.LOC104821805 polygalacturonase At1g48100 NW_010966542.1 + View
Tripterygium wilfordii TWI73G0206 NC_052232.1 + View
Vaccinium macrocarpon vmacro15161 Similar to At1g48100: Polygalacturonase At1g48100 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0720G0695 CM024071.1 - View
Vigna mungo VMungo0540G1613 CM024075.1 - View
Vitis vinifera GSVIVG01031298001 chr14 + View
Vitis vinifera GSVIVG01028189001 chr7 - View
Vitis vinifera GSVIVG01017644001 chr5 + View