Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0013314 PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Populus euphratica] Chr11 - View
CSS0028078 PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Vitis vinifera] Chr6 - View
CSS0009783 hypothetical protein POPTR_0004s12430g [Populus trichocarpa] Chr1 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G4020 LG-2 - View
Aethionema arabicum Aa31LG4G11520 LG-4 - View
Acer truncatum Atru.chr11.1692 chr11 + View
Actinidia chinensis Actinidia09237 Lachesis_group13 + View
Actinidia chinensis Actinidia38764 Lachesis_group4 + View
Actinidia chinensis Actinidia01961 Lachesis_group11 + View
Actinidia chinensis Actinidia31949 Lachesis_group15 - View
Arabidopsis lyrata AL2G28460 scaffold_2 + View
Arabidopsis lyrata AL5G19140 scaffold_5 + View
Avicennia marina MSTRG.15461 ScioBoG_19538_HRSCAF_19626 - View
Avicennia marina MSTRG.3025 ScioBoG_102835_HRSCAF_103059 - View
Amaranthus hybridus Ah.10g031900 Pentatricopeptide repeat-containing protein At1g15510, chloroplastic (Protein EARLY CHLOROPLAST BIOGENESIS 2) (AtECB2) (Protein VANILLA CREAM 1) AmaHy_arrow1_Scaffold_10 - View
Aquilegia oxysepala Aqoxy3G03538 CHR03 + View
Aquilegia oxysepala Aqoxy3G00446 CHR03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Q4IUW2 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) arahy.Tifrunner.gnm1.Arahy.04 + View
Arabidopsis thaliana AT3G29230 Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1)%3B Has 41738 Blast hits to 14344 proteins in 280 species: Archae - 0%3B Bacteria - 4%3B Metazoa - 166%3B Fungi - 161%3B Plants - 40664%3B Viruses - 0%3B Other Eukaryotes - 743 (source: NCBI BLink). Chr3 + View
Arabidopsis thaliana AT2G03380 Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1)%3B Has 46134 Blast hits to 13811 proteins in 252 species: Archae - 0%3B Bacteria - 9%3B Metazoa - 175%3B Fungi - 164%3B Plants - 45093%3B Viruses - 0%3B Other Eukaryotes - 693 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT1G69350 Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1)%3B Has 50942 Blast hits to 14152 proteins in 270 species: Archae - 0%3B Bacteria - 36%3B Metazoa - 125%3B Fungi - 175%3B Plants - 49809%3B Viruses - 0%3B Other Eukaryotes - 797 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT5G15300 Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G29230.1)%3B Has 37071 Blast hits to 13818 proteins in 252 species: Archae - 0%3B Bacteria - 21%3B Metazoa - 136%3B Fungi - 146%3B Plants - 36104%3B Viruses - 0%3B Other Eukaryotes - 664 (source: NCBI BLink). Chr5 - View
Amborella trichopoda ATR0111G014 AmTr_v1.0_scaffold00177 + View
Brassica carinata BcaC06g30889 ChrC06 + View
Brassica carinata BcaC06g33680 ChrC06 + View
Brassica napus C07p38120 C07 + View
Brassica napus C03p39560 C03 + View
Brassica napus A06p40050 A06 - View
Brassica oleracea BolC9t59013H C9 + View
Brassica oleracea BolC7t44334H C7 + View
Brassica rapa BraA10t44418Z A10 + View
Brassica rapa BraA06t26920Z A06 - View
Cannabis sativa CANSAT64G0234 NC_044379.1 + View
Cicer arietinum L. Ca_21807_v3 Ca_LG7_v3 - View
Corylus avellana Haze_11935 Similar to PCMP-E66: Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc11_g12280 Putative Pentatricopeptide repeat-containing protein At5g66520 chr11 - View
Coffea canephora Cc07_g03770 Pentatricopeptide repeat-containing protein At3g29230 chr7 + View
Citrus clementina Ciclev10033606m.g scaffold_4 + View
Carpinus fangiana Cfa008909 Cfa03 + View
Carya illinoinensis CiPaw.06G090000 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr06 - View
Carya illinoinensis CiPaw.05G128100 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr05 - View
Citrullus lanatus ClCG06G015890 Pentatricopeptide repeat-containing protein CG_Chr06 - View
Citrullus lanatus ClCG04G012100 Pentatricopeptide repeat-containing protein CG_Chr04 - View
Citrullus lanatus ClCG11G000470 Pentatricopeptide repeat-containing protein CG_Chr11 - View
Cucumis melo MELO3C029755.2 pentatricopeptide repeat-containing protein At4g21065-like chr02 - View
Carica papaya Cpa.g.sc1.84 supercontig_1 + View
Chenopodium quinoa AUR62007957 PCMP-E47: Pentatricopeptide repeat-containing protein At2g03380, mitochondrial C_Quinoa_Scaffold_2646 + View
Capsella rubella Carub.0001s2415 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 scaffold_1 + View
Capsella rubella Carub.0002s1595 PF13041 - PPR repeat family (PPR_2) scaffold_2 + View
Capsella rubella Carub.0005s0794 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_5 + View
Daucus carota DCAR_011068 hypothetical protein DCARv2_Chr3 - View
Davidia involucrata Dinv38764 GWHABJS00000019 - View
Davidia involucrata Dinv16704 GWHABJS00000018 + View
Davidia involucrata Dinv34113 GWHABJS00000008 - View
Durio zibethinus Duzib147G1399 NW_019168470.1 - View
Erigeron canadensis ECA238G4320 Conyza_canadensis_scaffold:6 - View
Erigeron canadensis ECA232G4837 Conyza_canadensis_scaffold:2 - View
Eucalyptus grandis Eucgr.B03180 Chr02 - View
Eutrema salsugineum Thhalv10019580m.g PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) scaffold_9 - View
Eutrema salsugineum Thhalv10003866m.g PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_6 - View
Fragaria x ananassa FAN22G0967 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb4-1 - View
Fragaria x ananassa FAN07G1055 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb4-4 + View
Fragaria x ananassa FAN09G4846 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Fvb6-2 - View
Fragaria x ananassa FAN12G3073 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb4-3 + View
Fragaria x ananassa FAN17G1081 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb4-2 + View
Fragaria vesca FvH4_4g30430 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb4 - View
Fragaria vesca FvH4_6g47760 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Fvb6 - View
Gossypium hirsutum Gohir.A07G184801 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) A07 - View
Gossypium hirsutum Gohir.A12G162700 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) A12 + View
Gossypium hirsutum Gohir.D12G165700 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) D12 + View
Gossypium hirsutum Gohir.D04G045700 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) D04 - View
Glycine max Glyma.01G054900 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm01 - View
Glycine max Glyma.02G113400 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm02 - View
Glycine max Glyma.07G226200 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Gm07 + View
Gossypium raimondii Gorai.008G178400 Chr08 + View
Gossypium raimondii Gorai.012G050900 Chr12 - View
Helianthus annuus HanXRQChr07g0199521 Probable tetratricopeptide repeat (TPR)-like superfamily protein HanXRQChr07 - View
Helianthus annuus HanXRQChr16g0515201 Probable pentatricopeptide repeat (PPR) superfamily protein HanXRQChr16 + View
Helianthus annuus HanXRQChr14g0448651 Putative tetratricopeptide-like helical domain HanXRQChr14 + View
Helianthus annuus HanXRQChr08g0210941 Probable ribonuclease 1 HanXRQChr08 - View
Lupinus albus Lalb_Chr10g0093271 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Lalb_Chr10 - View
Lotus japonicus Lj2g0018360 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) chr2 - View
Lotus japonicus Lj1g0001862 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) chr1 - View
Lotus japonicus Lj4g0024483 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) chr4 + View
Lonicera japonica Lj3P1032T41 GWHAAZE00000003 - View
Lactuca sativa Lsat_1_v5_gn_8_48141 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Lsat_1_v8_lg_8 + View
Lactuca sativa Lsat_1_v5_gn_2_88141 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Lsat_1_v8_lg_2 + View
Medicago truncatula Medtr5g043450 PPR containing plant-like protein chr5 - View
Medicago truncatula Medtr7g011840 PPR containing plant-like protein chr7 + View
Medicago truncatula Medtr4g082470 PPR containing plant-like protein chr4 + View
Nelumbo nucifera Nn3g17385 chr3 + View
Nelumbo nucifera Nn4g23315 chr4 + View
Nicotiana tabacum Nitab4.5_0000565g0010 Pentatricopeptide repeat, Tetratricopeptide-like helical Nitab4.5_0000565 + View
Nicotiana tabacum Nitab4.5_0000391g0010 Exostosin-like Nitab4.5_0000391 + View
Olea europaea Oeu000852.1 scaffold1016 - View
Olea europaea Oeu016230.1 chr6 + View
Oryza sativa ssp. japonica Os12g0578000 Conserved hypothetical protein. chr12 - View
Petunia axillaris Peaxi162Scf00274g00006 Pentatricopeptide repeat-containing protein Peaxi162Scf00274 - View
Petunia axillaris Peaxi162Scf00166g00946 Pentatricopeptide repeat-containing protein Peaxi162Scf00166 - View
Petunia axillaris Peaxi162Scf00451g00430 Pentatricopeptide repeat-containing protein Peaxi162Scf00451 - View
Punica granatum PGR102G0545 NC_045129.1 + View
Punica granatum PGR119G1655 NC_045132.1 - View
Prunus persica Prupe.1G281800 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Pp01 + View
Populus trichocarpa Potri.008G092900 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Chr08 + View
Populus trichocarpa Potri.017G083900 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr17 - View
Phaseolus vulgaris Phvul.002G089500 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr02 + View
Phaseolus vulgaris Phvul.008G037800 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr08 - View
Quercus lobata QL02p039290 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr2g0166911 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim08G0149800 chr08 - View
Rhododendron simsii Rhsim10G0044500 chr10 + View
Striga asiatica SGA_v2.0_scaffold16G07750 scaffold16 + View
Striga asiatica SGA_v2.0_scaffold413G51166 scaffold413 - View
Salix brachista Sabra08G0069700 GWHAAZH00000008 + View
Salix brachista Sabra04G0066400 GWHAAZH00000004 + View
Salix brachista Sabra10G0123000 GWHAAZH00000010 - View
Simmondsia chinensis Sc11g0004840 GWHAASQ00000011 - View
Simmondsia chinensis Sc11g0002180 GWHAASQ00000011 + View
Sechium edule Sed0014076 LG08 - View
Solanum lycopersicum Solyc03g115570.1 Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A2I0WGW9_9ASPA) SL4.0ch03 - View
Schrenkiella parvula Sp6g28720 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) ch6-6 + View
Schrenkiella parvula Sp2g17820 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) ch2-4 + View
Solanum pennellii Sopen02g033180 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch02 + View
Solanum pennellii Sopen03g034560 Encodes a chloroplast RNA editing factor. | ORGANELLE TRANSCRIPT PROCESSING 85 (OTP85) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch03 - View
Solanum pennellii Sopen05g007460 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch05 + View
Solanum tuberosum PGSC0003DMG400024657 Pentatricopeptide repeat-containing protein ST4.03ch03 - View
Solanum tuberosum PGSC0003DMG402028329 Pentatricopeptide repeat-containing protein ST4.03ch05 - View
Selenicereus undatus Hund11940 Scaffold_33679 + View
Tarenaya hassleriana THA.LOC104821017 pentatricopeptide repeat-containing protein At5g15340%2C mitochondrial NW_010966372.1 + View
Trifolium pratense TPR.G34047 Tp57577_TGAC_v2_LG2 - View
Trifolium pratense TPR.G33453 Tp57577_TGAC_v2_LG6 - View
Tripterygium wilfordii TWI79G0684 NC_052238.1 - View
Tripterygium wilfordii TWI32G1038 NC_052254.1 + View
Vaccinium macrocarpon vmacro01293 Similar to PCMP-H14: Putative pentatricopeptide repeat-containing protein At5g40405 (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0251G0450 CM024069.1 + View
Vigna mungo VMungo1383G2689 CM024070.1 - View