Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0016576 PREDICTED: pollen-specific protein SF3-like isoform X2 [Nicotiana tomentosiformis] Chr3 + View
CSS0037278 PREDICTED: pollen-specific protein SF3-like isoform X2 [Nicotiana tomentosiformis] Chr6 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G11150 LG-1 + View
Aethionema arabicum Aa31LG10G15310 LG-10 - View
Acer truncatum Atru.chr5.485 chr5 + View
Arabidopsis lyrata AL1G10560 scaffold_1 - View
Arabidopsis lyrata AL5G43500 scaffold_5 - View
Avicennia marina MSTRG.28214 ScioBoG_94932_HRSCAF_95134 - View
Amaranthus hybridus Ah.05g176500 LIM domain-containing protein PLIM2b (Pollen-expressed LIM protein 2B) AmaHy_arrow1_Scaffold_5 - View
Arabidopsis thaliana AT1G01780 GATA type zinc finger transcription factor family protein Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1%2C WLIM2a%2C and WLIM2b are widely expressed%2C whereas PLIM2a%2C PLIM2b%2C and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization. GATA type zinc finger transcription factor family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C LIM-type (InterPro:IPR001781)%3B BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G45800.1)%3B Has 4819 Blast hits to 3002 proteins in 170 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4032%3B Fungi - 22%3B Plants - 446%3B Viruses - 0%3B Other Eukaryotes - 319 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT3G61230 GATA type zinc finger transcription factor family protein Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1%2C WLIM2a%2C and WLIM2b are widely expressed%2C whereas PLIM2a%2C PLIM2b%2C and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization. GATA type zinc finger transcription factor family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: L mature pollen stage%2C M germinated pollen stage%2C 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C LIM-type (InterPro:IPR001781)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%3B BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G45800.1)%3B Has 5500 Blast hits to 3584 proteins in 170 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 4540%3B Fungi - 25%3B Plants - 547%3B Viruses - 0%3B Other Eukaryotes - 388 (source: NCBI BLink). Chr3 - View
Amborella trichopoda ATR0680G181 AmTr_v1.0_scaffold00009 + View
Brassica carinata BcaC02g07055 ChrC02 - View
Brassica carinata BcaC07g40627 ChrC07 - View
Brassica carinata BcaC02g10215 ChrC02 - View
Brassica carinata BcaC08g45111 ChrC08 - View
Brassica carinata BcaB03g13613 ChrB03 + View
Brassica carinata BcaC02g12180 ChrC02 + View
Brassica napus C04p06730 C04 - View
Brassica napus C04p31480 C04 + View
Brassica napus C08p36100 C08 - View
Brassica napus C06p27270 C06 - View
Brassica napus C05p00280 C05 - View
Brassica napus A09p53300 A09 - View
Brassica napus A04p01200 A04 + View
Brassica oleracea BolC6t37897H C6 - View
Brassica oleracea BolC8t51192H C8 - View
Brassica oleracea BolC4t22294H C4 - View
Brassica oleracea BolC5t28818H C5 - View
Brassica oleracea BolC4t24693H C4 + View
Brassica rapa BraA09t40754Z A09 - View
Brassica rapa BraA05t19545Z A05 - View
Brassica rapa BraA04t15838Z A04 + View
Beta vulgaris EL10Ac1g00537 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A Chr1_EL10_PGA_scaffold3 + View
Capsicum annuum CAN.G78.52 PGAv.1.6.scaffold78 + View
Cannabis sativa CANSAT56G3934 NC_044371.1 + View
Cicer arietinum L. Ca_23663_v3 Ca_LG7_v3 + View
Corylus avellana Haze_15466 Similar to PLIM2B: LIM domain-containing protein PLIM2b (Arabidopsis thaliana OX%3D3702) 11 - View
Corylus avellana Haze_08892 Similar to WLIM2B: LIM domain-containing protein WLIM2b (Arabidopsis thaliana OX%3D3702) 4 - View
Coffea canephora Cc02_g37690 Putative Pollen-specific protein SF3 chr2 - View
Coffea canephora Cc08_g14370 Putative Pollen-specific protein SF3 chr8 - View
Citrus clementina Ciclev10022448m.g scaffold_3 + View
Ceratophyllum demersum CDE05G1378 3 + View
Cardamine hirsuta CARHR000540 LIM transcription factor Chr1 - View
Cardamine hirsuta CARHR171530 LIM domain-containing protein Chr5 - View
Carya illinoinensis CiPaw.01G057900 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A Chr01 - View
Carya illinoinensis CiPaw.02G028600 PTHR24206:SF22 - PROTEIN PLIM2A Chr02 - View
Citrullus lanatus ClCG05G001690 LIM domain-containing protein CG_Chr05 + View
Cucumis melo MELO3C006128.2 LIM domain-containing protein PLIM2b-like chr06 + View
Corchorus olitorius COL.COLO4_12677 Zinc finger%2C LIM-type AWUE01014939.1 + View
Carica papaya Cpa.g.sc18.225 supercontig_18 - View
Chenopodium quinoa AUR62004324 PLIM2C: LIM domain-containing protein PLIM2c C_Quinoa_Scaffold_4250 + View
Chenopodium quinoa AUR62033338 PLIM2C: LIM domain-containing protein PLIM2c C_Quinoa_Scaffold_2608 + View
Capsella rubella Carub.0001s0043 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A scaffold_1 - View
Capsella rubella Carub.0005s2788 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A scaffold_5 - View
Cucumis sativus L. CsaV3_3G009070 LIM domain-containing protein chr3 + View
Davidia involucrata Dinv37664 GWHABJS00000017 + View
Davidia involucrata Dinv32455 GWHABJS00000020 - View
Davidia involucrata Dinv43785 GWHABJS00000016 - View
Durio zibethinus Duzib138G0971 NW_019167893.1 + View
Eucalyptus grandis Eucgr.D01873 Chr04 + View
Eucalyptus grandis Eucgr.E00179 Chr05 + View
Erythranthe guttata Migut.N01428 scaffold_14 - View
Eutrema salsugineum Thhalv10008789m.g PTHR24206:SF22 - PROTEIN PLIM2A scaffold_5 + View
Eutrema salsugineum Thhalv10001618m.g PTHR24206:SF22 - PROTEIN PLIM2A scaffold_22 + View
Eutrema salsugineum Thhalv10006235m.g PTHR24206:SF22 - PROTEIN PLIM2A scaffold_19 + View
Fragaria x ananassa FAN06G0803 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A Fvb7-2 - View
Fragaria x ananassa FAN03G0877 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A Fvb7-3 - View
Fragaria x ananassa FAN01G2559 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A Fvb7-4 - View
Fragaria x ananassa FAN06G1606 PTHR24206:SF22 - PROTEIN PLIM2A Fvb7-2 + View
Fragaria x ananassa FAN10G4101 PTHR24206:SF22 - PROTEIN PLIM2A Fvb7-1 + View
Fragaria vesca FvH4_5g01960 K09377 - cysteine and glycine-rich protein (CSRP) Fvb5 - View
Fragaria vesca FvH4_7g13840 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A Fvb7 + View
Gossypium raimondii Gorai.007G097400 Chr07 + View
Gossypium raimondii Gorai.004G157300 Chr04 + View
Helianthus annuus HanXRQChr03g0093491 Putative zinc finger, LIM-type HanXRQChr03 - View
Lotus japonicus Lj1g0010133 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A chr1 + View
Lonicera japonica Lj7C516T4 GWHAAZE00000007 + View
Lactuca sativa Lsat_1_v5_gn_7_5181 PTHR24206:SF22 - PROTEIN PLIM2A Lsat_1_v8_lg_7 - View
Malus domestica MD06G1078000 GATA type zinc finger transcription factor family protein Chr06 - View
Manihot esculenta Manes.01G259850 Chromosome01 + View
Nicotiana tabacum Nitab4.5_0002160g0060 Zinc finger, LIM-type Nitab4.5_0002160 - View
Olea europaea Oeu004523.1 chr3 + View
Petunia axillaris Peaxi162Scf00008g02027 GATA type zinc finger transcription factor family protein Peaxi162Scf00008 + View
Punica granatum PGR031G0019 NC_045127.1 + View
Punica granatum PGR042G2812 NC_045130.1 + View
Prunus persica Prupe.2G164200 PTHR24206:SF22 - PROTEIN PLIM2A Pp02 + View
Papaver somniferum PSO782G2440 NC_039365.1 - View
Populus trichocarpa Potri.003G124300 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A Chr03 - View
Populus trichocarpa Potri.001G107100 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A Chr01 + View
Populus trichocarpa Potri.002G157300 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A Chr02 - View
Phaseolus vulgaris Phvul.010G095700 Chr10 - View
Quercus lobata QL08p049518 8 + View
Rosa chinensis RcHm_v2.0_Chr1g0354051 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim07G0017900 chr07 + View
Striga asiatica SGA_v2.0_scaffold11G05656 scaffold11 - View
Striga asiatica SGA_v2.0_scaffold43G16442 scaffold43 + View
Salvia bowleyana SalBow5G4257 GWHASIU00000003 - View
Salvia bowleyana SalBow5G4845 GWHASIU00000003 - View
Salix brachista Sabra02G0124900 GWHAAZH00000002 - View
Sechium edule Sed0015049 LG12 + View
Solanum lycopersicum Solyc01g094320.3 LIM domain-containing protein (AHRD V3.3 *** A0A1Q3C877_CEPFO) SL4.0ch01 - View
Schrenkiella parvula Sp1g00510 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A ch1-1 - View
Schrenkiella parvula Sp4g27870 K09377 - cysteine and glycine-rich protein (CSRP) ch4-6 - View
Schrenkiella parvula Sp5g02140 PTHR24206//PTHR24206:SF22 - FAMILY NOT NAMED // PROTEIN PLIM2A ch5-1 + View
Solanum pennellii Sopen10g006330 GATA type zinc finger transcription factor family protein | FUNCTIONS IN: zinc ion binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type | BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein Spenn-ch10 + View
Solanum pennellii Sopen01g038110 GATA type zinc finger transcription factor family protein | FUNCTIONS IN: zinc ion binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type | BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein Spenn-ch01 - View
Solanum tuberosum PGSC0003DMG400000155 LIM domain protein PLIM-2 ST4.03ch01 - View
Solanum tuberosum PGSC0003DMG400010269 LIM domain protein 2b ST4.03ch10 + View
Trochodendron aralioides TAR374G1388 group12 - View
Theobroma cacao Thecc.01G363200 Chromosome_1 - View
Tarenaya hassleriana THA.LOC104817283 LIM domain-containing protein PLIM2c-like isoform X1 NW_010965946.1 - View
Tarenaya hassleriana THA.LOC104802021 LIM domain-containing protein PLIM2c-like NW_010970490.1 - View
Tripterygium wilfordii TWI59G1230 NC_052248.1 - View
Vaccinium macrocarpon vmacro13306 Similar to PLIM2C: LIM domain-containing protein PLIM2c (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01026849001 chr15 - View