Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr8.1865 chr8 + View
Actinidia chinensis Actinidia05262 Lachesis_group20 - View
Arabidopsis lyrata AL6G12540 scaffold_6 - View
Arabidopsis thaliana AT5G03240 polyubiquitin 3 encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4%2C and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments. polyubiquitin 3 (UBQ3)%3B INVOLVED IN: protein modification process%2C response to UV-B%2C response to light stimulus%2C ubiquitin-dependent protein catabolic process%3B LOCATED IN: intracellular%2C vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956)%2C Ubiquitin conserved site (InterPro:IPR019954)%2C Ubiquitin (InterPro:IPR000626)%2C Ubiquitin supergroup (InterPro:IPR019955)%3B BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1)%3B Has 26684 Blast hits to 7218 proteins in 726 species: Archae - 0%3B Bacteria - 80%3B Metazoa - 12490%3B Fungi - 3021%3B Plants - 5505%3B Viruses - 651%3B Other Eukaryotes - 4937 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaC06g32045 ChrC06 - View
Brassica napus C09p73530 C09 + View
Brassica napus A10p32690 A10 + View
Cardamine hirsuta CARHR210100 Polyubiquitin Chr6 - View
Carya illinoinensis CiPaw.11G062900 K12158 - ubiquitin-like protein Nedd8 (NEDD8) Chr11 - View
Capsella rubella Carub.0006s0203 K04551 - ubiquitin B (UBB) scaffold_6 - View
Davidia involucrata Dinv37288 GWHABJS00000021 + View
Durio zibethinus Duzib093G0663 NW_019167937.1 + View
Eucalyptus grandis Eucgr.A01163 Chr01 - View
Erythranthe guttata Migut.L01672 scaffold_12 - View
Fragaria vesca FvH4_6g15622 K04551 - ubiquitin B (UBB) Fvb6 - View
Gossypium hirsutum Gohir.D04G114300 PTHR10666//PTHR10666:SF150 - UBIQUITIN // POLYUBIQUITIN 3 D04 + View
Hydrangea macrophylla Hma1.2p1_0205F.1_g087450 Hma1.2p1_0205F.1 - View
Hydrangea macrophylla Hma1.2p1_0111F.1_g054090 Hma1.2p1_0111F.1 - View
Lupinus albus Lalb_Chr20g0117111 PTHR10666:SF155 - POLYUBIQUITIN 4 Lalb_Chr20 + View
Punica granatum PGR142G0761 NC_045128.1 - View
Punica granatum PGR004G2673 NC_045131.1 + View
Papaver somniferum PSO229G0037 NW_020650526.1 + View
Rosa chinensis RcHm_v2.0_Chr3g0469291 RcHm_v2.0_Chr3 - View
Rosa chinensis RcHm_v2.0_Chr1g0382401 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim04G0148000 chr04 + View
Solanum lycopersicum Solyc10g150151.1 Unknown protein SL4.0ch10 - View
Schrenkiella parvula Sp6g39490 K04551//K08770 - ubiquitin B (UBB) // ubiquitin C (UBC) ch6-6 + View
Solanum pennellii Sopen10g035500 polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | ubiquitin 11 (UBQ11) | INVOLVED IN: protein modification process, response to salt stress, ubiquitin-dependent protein catabolic process | LOCATED IN: intracellular | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup , Ubiquitin conserved site , Ubiquitin , Ubiquitin supergroup | BEST Arabidopsis thaliana protein match is: Ubiquitin family protein ., Ubiquitin - Triticum aestivum (Wheat) Spenn-ch10 - View
Solanum tuberosum PGSC0003DMG400010476 Polyubiquitin ST4.03ch10 + View
Tarenaya hassleriana THA.LOC104826903 polyubiquitin-like NW_010967707.1 - View