Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0036661 hypothetical protein JCGZ_02373 [Jatropha curcas] Chr9 + View
CSS0013663 PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Vitis vinifera] Chr13 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G3880 LG-5 - View
Aethionema arabicum Aa31LG9G3070 LG-9 - View
Acer truncatum Atru.chr4.1931 chr4 - View
Actinidia chinensis Actinidia11361 Lachesis_group21 + View
Actinidia chinensis Actinidia30136 Lachesis_group24 - View
Actinidia chinensis Actinidia20829 Lachesis_group0 + View
Actinidia chinensis Actinidia39918 Lachesis_group17 + View
Actinidia chinensis Actinidia35811 Lachesis_group8 + View
Actinidia chinensis Actinidia37542 Lachesis_group13 - View
Arabidopsis lyrata AL7G41990 scaffold_7 - View
Arabidopsis lyrata AL4G29080 scaffold_4 + View
Avicennia marina MSTRG.4159 ScioBoG_102837_HRSCAF_103074 - View
Aquilegia oxysepala Aqoxy5G00169 CHR05 - View
Aquilegia oxysepala Aqoxy2G03722 CHR02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Q4QJ82 K14411 - RNA-binding protein Musashi (MSI) arahy.Tifrunner.gnm1.Arahy.19 - View
Arabidopsis thaliana AT2G33410 RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G14300.1)%3B Has 110468 Blast hits to 48661 proteins in 2208 species: Archae - 78%3B Bacteria - 27657%3B Metazoa - 45421%3B Fungi - 8288%3B Plants - 12503%3B Viruses - 709%3B Other Eukaryotes - 15812 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT4G14300 RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G33410.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr4 + View
Brassica carinata BcaC01g05842 ChrC01 - View
Brassica carinata BcaB06g28684 ChrB06 + View
Brassica carinata BcaB02g08619 ChrB02 - View
Brassica carinata BcaB02g10560 ChrB02 + View
Brassica carinata BcaC02g11429 ChrC02 + View
Brassica napus C03p21880 C03 + View
Brassica napus C04p62870 C04 + View
Brassica napus A04p25710 A04 + View
Brassica oleracea BolC4t27770H C4 + View
Brassica oleracea BolC4t23136H C4 - View
Brassica rapa BraA04t18075Z A04 + View
Beta vulgaris EL10Ac3g04958 PTHR24012:SF308 - PROTEIN Y55F3AM.3, ISOFORM A Chr3_EL10_PGA_scaffold7 - View
Cannabis sativa CANSAT01G2671 NC_044373.1 + View
Cicer arietinum L. Ca_09808_v3 Ca_LG4_v3 + View
Corylus avellana Haze_24680 Similar to RNP1: Heterogeneous nuclear ribonucleoprotein 1 (Arabidopsis thaliana OX%3D3702) 8 - View
Corylus avellana Haze_11443 Similar to RNP1: Heterogeneous nuclear ribonucleoprotein 1 (Arabidopsis thaliana OX%3D3702) 9 - View
Coffea canephora Cc03_g05990 RNA-binding (RRM/RBD/RNP motifs) family protein chr3 - View
Coffea canephora Cc01_g17960 Putative uncharacterized protein chr1 + View
Citrus clementina Ciclev10004941m.g scaffold_9 + View
Citrus clementina Ciclev10020365m.g scaffold_3 + View
Carpinus fangiana Cfa002469 Cfa01 - View
Cardamine hirsuta CARHR220480 RNA-binding protein-like Chr7 + View
Cardamine hirsuta CARHR127420 RNA-binding protein-like Chr4 + View
Carya illinoinensis CiPaw.03G268700 K14411 - RNA-binding protein Musashi (MSI) Chr03 - View
Carya illinoinensis CiPaw.02G108200 K14411 - RNA-binding protein Musashi (MSI) Chr02 + View
Carya illinoinensis CiPaw.04G188900 K14411 - RNA-binding protein Musashi (MSI) Chr04 - View
Carya illinoinensis CiPaw.01G179600 K14411 - RNA-binding protein Musashi (MSI) Chr01 + View
Citrullus lanatus ClCG06G007190 RNA-binding protein, putative CG_Chr06 - View
Citrullus lanatus ClCG07G001290 RNA-binding protein-like CG_Chr07 - View
Cucumis melo MELO3C023033.2 heterogeneous nuclear ribonucleoprotein 1-like chr05 - View
Chenopodium quinoa AUR62015530 HNRNPA2B1: Heterogeneous nuclear ribonucleoproteins A2/B1 C_Quinoa_Scaffold_2751 - View
Chenopodium quinoa AUR62002178 RNP1: Heterogeneous nuclear ribonucleoprotein 1 C_Quinoa_Scaffold_4480 - View
Capsella rubella Carub.0004s1504 PTHR24012//PTHR24012:SF308 - FAMILY NOT NAMED // PROTEIN Y55F3AM.3, ISOFORM A scaffold_4 + View
Capsella rubella Carub.0007s2801 PTHR24012//PTHR24012:SF308 - FAMILY NOT NAMED // PROTEIN Y55F3AM.3, ISOFORM A scaffold_7 - View
Cucumis sativus L. CsaV3_2G012530 heterogeneous nuclear ribonucleoprotein 1-like chr2 + View
Daucus carota DCAR_027336 hypothetical protein DCARv2_Chr8 + View
Daucus carota DCAR_024282 hypothetical protein DCARv2_Chr7 - View
Davidia involucrata Dinv27094 GWHABJS00000014 + View
Davidia involucrata Dinv29818 GWHABJS00000016 + View
Davidia involucrata Dinv16384 GWHABJS00000007 - View
Erigeron canadensis ECA247G1281 Conyza_canadensis_scaffold:7 + View
Eucalyptus grandis Eucgr.H00136 Chr08 + View
Erythranthe guttata Migut.G00490 scaffold_7 + View
Eutrema salsugineum Thhalv10025365m.g PTHR24012:SF308 - PROTEIN Y55F3AM.3, ISOFORM A scaffold_1 - View
Eutrema salsugineum Thhalv10016750m.g PTHR24012:SF308 - PROTEIN Y55F3AM.3, ISOFORM A scaffold_10 + View
Fragaria x ananassa FAN24G1103 K14411 - RNA-binding protein Musashi (MSI) Fvb2-2 - View
Fragaria x ananassa FAN12G1627 K14411 - RNA-binding protein Musashi (MSI) Fvb4-3 + View
Fragaria x ananassa FAN15G1588 K14411 - RNA-binding protein Musashi (MSI) Fvb2-4 + View
Fragaria x ananassa FAN27G1061 K14411 - RNA-binding protein Musashi (MSI) Fvb2-1 + View
Fragaria x ananassa FAN17G1612 K14411 - RNA-binding protein Musashi (MSI) Fvb4-2 + View
Fragaria x ananassa FAN22G0981 K14411 - RNA-binding protein Musashi (MSI) Fvb4-1 - View
Fragaria vesca FvH4_4g04320 K14411 - RNA-binding protein Musashi (MSI) Fvb4 - View
Gossypium hirsutum Gohir.A02G041800 PTHR24012//PTHR24012:SF308 - FAMILY NOT NAMED // PROTEIN Y55F3AM.3, ISOFORM A A02 + View
Gossypium hirsutum Gohir.D02G047500 PTHR24012//PTHR24012:SF308 - FAMILY NOT NAMED // PROTEIN Y55F3AM.3, ISOFORM A D02 + View
Glycine max Glyma.10G189500 PTHR24012//PTHR24012:SF308 - FAMILY NOT NAMED // PROTEIN Y55F3AM.3, ISOFORM A Gm10 - View
Glycine max Glyma.20G201300 PTHR24012//PTHR24012:SF308 - FAMILY NOT NAMED // PROTEIN Y55F3AM.3, ISOFORM A Gm20 + View
Gossypium raimondii Gorai.005G052700 Chr05 + View
Helianthus annuus HanXRQChr02g0059341 Probable RNA-binding (RRM/RBD/RNP motifs) family protein HanXRQChr02 + View
Hydrangea macrophylla Hma1.2p1_0385F.1_g141440 Hma1.2p1_0385F.1 - View
Lupinus albus Lalb_Chr06g0169461 PTHR24012//PTHR24012:SF308 - FAMILY NOT NAMED // PROTEIN Y55F3AM.3, ISOFORM A Lalb_Chr06 - View
Lupinus albus Lalb_Chr19g0128461 PTHR24012:SF308 - PROTEIN Y55F3AM.3, ISOFORM A Lalb_Chr19 - View
Lupinus albus Lalb_Chr03g0037021 PTHR24012:SF308 - PROTEIN Y55F3AM.3, ISOFORM A Lalb_Chr03 + View
Lotus japonicus Lj5g0003393 PTHR24012//PTHR24012:SF308 - FAMILY NOT NAMED // PROTEIN Y55F3AM.3, ISOFORM A chr5 + View
Lonicera japonica Lj2A1144T88 GWHAAZE00000002 + View
Lonicera japonica Lj6A623T39 GWHAAZE00000006 + View
Lonicera japonica Lj3A676G49 GWHAAZE00000003 + View
Lactuca sativa Lsat_1_v5_gn_9_10141 Lsat_1_v8_lg_9 - View
Lactuca sativa Lsat_1_v5_gn_6_68800 Lsat_1_v8_lg_6 - View
Magnolia biondii MBI07_g11126_MAGBIO AED:0.16 Chr07 - View
Malus domestica MD16G1224500 RNA-binding (RRM/RBD/RNP motifs) family protein Chr16 - View
Malus domestica MD13G1219200 RNA-binding (RRM/RBD/RNP motifs) family protein Chr13 - View
Manihot esculenta Manes.15G044100 Chromosome15 - View
Manihot esculenta Manes.03G160600 Chromosome03 + View
Manihot esculenta Manes.13G037800 Chromosome13 - View
Nelumbo nucifera Nn1g02912 chr1 - View
Nelumbo nucifera Nn3g19745 chr3 - View
Olea europaea Oeu059401.4 scaffold810 + View
Olea europaea Oeu055252.1 scaffold69 - View
Oryza sativa ssp. japonica Os10g0470900 Nucleotide-binding, alpha-beta plait domain containing protein. Hypothetical conserved gene. chr10 + View
Petunia axillaris Peaxi162Scf00033g02835 RNA-binding (RRM/RBD/RNP motifs) family protein Peaxi162Scf00033 - View
Petunia axillaris Peaxi162Scf00415g00526 RNA-binding (RRM/RBD/RNP motifs) family protein Peaxi162Scf00415 - View
Punica granatum PGR031G2067 NC_045127.1 - View
Prunus persica Prupe.8G218100 K14411 - RNA-binding protein Musashi (MSI) Pp08 + View
Prunus persica Prupe.1G045900 Pp01 - View
Populus trichocarpa Potri.002G258600 K14411 - RNA-binding protein Musashi (MSI) Chr02 + View
Populus trichocarpa Potri.008G170400 PTHR24012//PTHR24012:SF308 - FAMILY NOT NAMED // PROTEIN Y55F3AM.3, ISOFORM A Chr08 - View
Populus trichocarpa Potri.010G067500 PTHR24012//PTHR24012:SF308 - FAMILY NOT NAMED // PROTEIN Y55F3AM.3, ISOFORM A Chr10 + View
Quercus lobata QL09p040974 9 - View
Quercus lobata QL06p020678 6 - View
Rosa chinensis RcHm_v2.0_Chr4g0394771 RcHm_v2.0_Chr4 - View
Rosa chinensis RcHm_v2.0_Chr6g0287221 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim13G0039100 chr13 - View
Rhododendron simsii Rhsim02G0042700 chr02 - View
Rhododendron simsii Rhsim04G0173800 chr04 + View
Striga asiatica SGA_v2.0_scaffold67G22707 scaffold67 + View
Salix brachista Sabra02G0196800 GWHAAZH00000002 + View
Salix brachista Sabra08G0130300 GWHAAZH00000008 - View
Salix brachista Sabra10G0039400 GWHAAZH00000010 - View
Simmondsia chinensis Sc25g0003610 GWHAASQ00000025 + View
Simmondsia chinensis Sc19g0003280 GWHAASQ00000019 - View
Sechium edule Sed0020816 LG04 - View
Sechium edule Sed0012588 LG09 + View
Solanum lycopersicum Solyc03g005680.3 RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *-* F4K4W6_ARATH) SL4.0ch03 - View
Solanum lycopersicum Solyc09g090520.3 RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *-* F4K4W6_ARATH) SL4.0ch09 - View
Schrenkiella parvula Sp4g15730 PTHR24012//PTHR24012:SF308 - FAMILY NOT NAMED // PROTEIN Y55F3AM.3, ISOFORM A ch4-6 + View
Schrenkiella parvula Sp7g12310 PTHR24012:SF308 - PROTEIN Y55F3AM.3, ISOFORM A ch7-4 + View
Solanum pennellii Sopen03g001690 RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch03 - View
Solanum pennellii Sopen09g033450 RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch09 - View
Solanum tuberosum PGSC0003DMG400013456 Heterogeneous nuclear ribonucleoprotein 27C ST4.03ch03 - View
Solanum tuberosum PGSC0003DMG400017156 Heterogeneous nuclear ribonucleoprotein 27C ST4.03ch09 - View
Selenicereus undatus Hund03076 Scaffold_19641 - View
Trochodendron aralioides TAR362G0502 group17 - View
Trochodendron aralioides TAR365G0858 group16 + View
Trochodendron aralioides TAR633G0795 group2 + View
Trochodendron aralioides TAR636G1154 group1 + View
Theobroma cacao Thecc.04G261600 RNA-binding family protein Chromosome_4 - View
Tarenaya hassleriana THA.LOC104801074 heterogeneous nuclear ribonucleoprotein 1 NW_010969548.1 + View
Tripterygium wilfordii TWI53G1794 NC_052244.1 + View
Tripterygium wilfordii TWI09G0164 NC_052245.1 + View
Vaccinium macrocarpon vmacro08537 Similar to RNP1: Heterogeneous nuclear ribonucleoprotein 1 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro02702 Similar to RNP1: Heterogeneous nuclear ribonucleoprotein 1 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro15469 Similar to RNP1: Heterogeneous nuclear ribonucleoprotein 1 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0720G3095 CM024071.1 - View
Vanilla planifolia HPP92_008543 RNA-binding protein-like *-* CM028153.1 + View
Vitis vinifera GSVIVG01027891001 chr5 - View
Vitis vinifera GSVIVG01028394001 chr7 - View
Zea mays Zm00001eb046160 Zm00001e004612 Heterogeneous nuclear ribonucleoprotein 1 1 - View