Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0013027 hypothetical protein VITISV_001899 [Vitis vinifera] Contig627 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G2450 LG-8 - View
Aethionema arabicum Aa31LG10G1980 LG-10 - View
Acer truncatum Atru.chr2.2435 chr2 - View
Actinidia chinensis Actinidia09695 Lachesis_group5 + View
Arabidopsis lyrata AL3G27660 scaffold_3 - View
Amaranthus hybridus Ah.04g164720 Squamosa promoter-binding-like protein 4 AmaHy_arrow1_Scaffold_4 - View
Aquilegia oxysepala Aqoxy1G02358 CHR01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ND5MUT PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED arahy.Tifrunner.gnm1.Arahy.18 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XL1QYV PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED arahy.Tifrunner.gnm1.Arahy.08 + View
Arabidopsis thaliana AT3G15270 squamosa promoter binding protein-like 5 Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family%2C a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box%2C which encodes the SBP-domain%2C required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. squamosa promoter binding protein-like 5 (SPL5)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of vegetative phase change%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 15 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: Squamosa promoter-binding protein (InterPro:IPR017238)%2C Transcription factor%2C SBP-box (InterPro:IPR004333)%3B BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 4 (TAIR:AT1G53160.1)%3B Has 839 Blast hits to 838 proteins in 41 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 839%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaB06g29551 ChrB06 - View
Brassica carinata BcaB04g20940 ChrB04 + View
Brassica napus A05p34220 A05 + View
Brassica napus C05p51970 C05 + View
Brassica oleracea BolC5t33882H C5 + View
Brassica rapa BraA05t22241Z A05 + View
Beta vulgaris EL10Ac4g08220 PF03110 - SBP domain (SBP) Chr4_EL10_PGA_scaffold1 + View
Capsicum annuum CAN.G162.43 PGAv.1.6.scaffold162 - View
Cicer arietinum L. Ca_03515_v3 Ca_LG1_v3 + View
Corylus avellana Haze_13205 Similar to SBP1: Squamosa promoter-binding protein 1 (Antirrhinum majus OX%3D4151) 5 + View
Corylus avellana Haze_09446 Similar to SPL4: Squamosa promoter-binding-like protein 4 (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc05_g07500 Putative uncharacterized protein chr5 + View
Coffea canephora Cc05_g11850 Putative uncharacterized protein chr5 - View
Citrus clementina Ciclev10009879m.g scaffold_1 - View
Carpinus fangiana Cfa020566 Cfa08 - View
Carpinus fangiana Cfa014642 Cfa06 + View
Cardamine hirsuta CARHR043370 squamosa promoter binding protein-like 4 Chr1 + View
Cardamine hirsuta CARHR090250 squamosa promoter binding protein-like 5 Chr3 - View
Carya illinoinensis CiPaw.12G119600 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Chr12 + View
Carya illinoinensis CiPaw.11G171300 PF03110 - SBP domain (SBP) Chr11 + View
Citrullus lanatus ClCG11G017960 Squamosa promoter-binding protein, putative CG_Chr11 - View
Cucumis melo MELO3C025597.2 Squamosa promoter-binding protein chr07 - View
Carica papaya Cpa.g.sc80.88 supercontig_80 + View
Chenopodium quinoa AUR62019452 SPL4: Squamosa promoter-binding-like protein 4 C_Quinoa_Scaffold_2127 + View
Capsella rubella Carub.0003s1492 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED scaffold_3 - View
Cucumis sativus L. CsaV3_4G033580 Squamosa promoter-binding protein chr4 - View
Davidia involucrata Dinv13392 GWHABJS00000013 + View
Davidia involucrata Dinv20191 GWHABJS00000013 + View
Davidia involucrata Dinv14930 GWHABJS00000001 - View
Durio zibethinus Duzib213G0865 NW_019167993.1 + View
Eucalyptus grandis Eucgr.F03303 Chr06 - View
Erythranthe guttata Migut.M00787 scaffold_13 - View
Eutrema salsugineum Thhalv10021617m.g PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED scaffold_13 + View
Fragaria x ananassa FAN16G0085 PTHR31251//PTHR31251:SF9 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Fvb3-3 - View
Fragaria x ananassa FAN21G3098 PTHR31251//PTHR31251:SF9 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Fvb3-2 + View
Fragaria x ananassa FAN11G3094 PTHR31251//PTHR31251:SF9 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Fvb3-4 + View
Fragaria vesca FvH4_3g19650 PTHR31251//PTHR31251:SF9 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Fvb3 - View
Gossypium hirsutum Gohir.D01G048500 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED D01 - View
Gossypium hirsutum Gohir.A01G061900 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED A01 - View
Gossypium hirsutum Gohir.A13G146600 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED A13 + View
Gossypium hirsutum Gohir.D13G151900 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED D13 + View
Glycine max Glyma.06G238100 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Gm06 + View
Glycine max Glyma.12G162999 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Gm12 + View
Glycine max Glyma.13G274900 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Gm13 - View
Glycine max Glyma.12G226000 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Gm12 + View
Glycine max Glyma.13G237400 PF03110 - SBP domain (SBP) Gm13 - View
Gossypium raimondii Gorai.002G068300 Chr02 - View
Gossypium raimondii Gorai.013G169800 Chr13 - View
Lupinus albus Lalb_Chr03g0030711 PTHR31251//PTHR31251:SF9 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Lalb_Chr03 + View
Lupinus albus Lalb_Chr19g0134151 PTHR31251//PTHR31251:SF9 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Lalb_Chr19 - View
Lotus japonicus Lj3g0002686 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED chr3 + View
Malus domestica MD03G1230600 squamosa promoter binding protein-like 5 Chr03 + View
Malus domestica MD11G1251800 squamosa promoter binding protein-like 4 Chr11 + View
Manihot esculenta Manes.03G106900 Chromosome03 - View
Manihot esculenta Manes.13G144400 Chromosome13 - View
Medicago truncatula Medtr2g078770 squamosa promoter-binding-like protein chr2 - View
Nicotiana tabacum Nitab4.5_0002330g0030 Transcription factor, SBP-box, Squamosa promoter-binding protein Nitab4.5_0002330 + View
Petunia axillaris Peaxi162Scf00069g01624 squamosa promoter-binding protein-like 12 Peaxi162Scf00069 + View
Petunia axillaris Peaxi162Scf00059g00113 squamosa promoter binding protein-like 4 Peaxi162Scf00059 - View
Punica granatum PGR031G2608 NC_045127.1 - View
Prunus persica Prupe.4G177200 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Pp04 - View
Papaver somniferum PSO675G4132 NC_039358.1 + View
Papaver somniferum PSO832G1461 NC_039367.1 - View
Papaver somniferum PSO541G0770 NC_039363.1 - View
Populus trichocarpa Potri.011G116800 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Chr11 - View
Populus trichocarpa Potri.001G398200 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Chr01 - View
Phaseolus vulgaris Phvul.005G074000 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED Chr05 + View
Rosa chinensis RcHm_v2.0_Chr5g0032861 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim06G0201200 chr06 + View
Striga asiatica SGA_v2.0_scaffold73G24242 scaffold73 - View
Striga asiatica SGA_v2.0_scaffold70G23509 scaffold70 - View
Salix brachista Sabra16G0261000 GWHAAZH00000016 - View
Salix brachista Sabra11G0102300 GWHAAZH00000011 - View
Simmondsia chinensis Sc16g0007110 GWHAASQ00000016 + View
Sechium edule Sed0023249 LG04 + View
Schrenkiella parvula Sp3g13470 PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED ch3-1 - View
Solanum pennellii Sopen07g027780 member of SPL gene family, encodes DNA binding proteins and putative transcription factors. All have the SBP-box, which encodes the SBP-domain, required for and sufficient for interaction with DNA. | squamosa promoter binding protein-like 1 (SPL1) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box , Ankyrin repeat-containing domain , Ankyrin repeat | BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 12 Spenn-ch07 - View
Solanum pennellii Sopen07g031170 member of SPL gene family, encodes DNA binding proteins and putative transcription factors. All have the SBP-box, which encodes the SBP-domain, required for and sufficient for interaction with DNA. | squamosa promoter binding protein-like 1 (SPL1) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box , Ankyrin repeat-containing domain , Ankyrin repeat | BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 12 Spenn-ch07 - View
Solanum tuberosum PGSC0003DMG400034745 SBP transcription factor ST4.03ch07 - View
Selenicereus undatus Hund22851 Scaffold_33680 - View
Trochodendron aralioides TAR627G0867 group6 - View
Trochodendron aralioides TAR626G0880 group3 + View
Trochodendron aralioides TAR624G0899 group9 - View
Theobroma cacao Thecc.07G094900 Chromosome_7 + View
Tarenaya hassleriana THA.LOC104818089 squamosa promoter-binding-like protein 5 NW_010966021.1 - View
Trifolium pratense TPR.G7939 Tp57577_TGAC_v2_LG7 - View
Tripterygium wilfordii TWI38G1698 NC_052252.1 - View
Tripterygium wilfordii TWI39G1043 NC_052250.1 + View
Vaccinium macrocarpon vmacro11882 Similar to SPL8: Squamosa promoter-binding-like protein 8 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1080G1216 CM024079.1 + View
Vitis vinifera GSVIVG01014302001 chr19 - View