Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|---|
Acer truncatum | Atru.chr10.1842 | chr10 | - | View | |
Actinidia chinensis | Actinidia05647 | Lachesis_group20 | + | View | |
Actinidia chinensis | Actinidia16562 | Lachesis_group0 | + | View | |
Arabidopsis lyrata | AL4G29580 | scaffold_4 | + | View | |
Avicennia marina | MSTRG.15870 | ScioBoG_19538_HRSCAF_19626 | - | View | |
Amaranthus hybridus | Ah.14g089630 | Squamosa promoter-binding protein 1 | AmaHy_arrow1_Scaffold_14 | - | View |
Aquilegia oxysepala | Aqoxy1G02358 | CHR01 | - | View | |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.B3PCVN | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | arahy.Tifrunner.gnm1.Arahy.08 | + | View |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.6HMZ07 | PF03110 - SBP domain (SBP) | arahy.Tifrunner.gnm1.Arahy.13 | - | View |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.LT7EDZ | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | arahy.Tifrunner.gnm1.Arahy.18 | + | View |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.XL1QYV | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | arahy.Tifrunner.gnm1.Arahy.08 | + | View |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.MVBZ07 | PF03110 - SBP domain (SBP) | arahy.Tifrunner.gnm1.Arahy.20 | - | View |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.GW0D9K | PF03110 - SBP domain (SBP) | arahy.Tifrunner.gnm1.Arahy.10 | - | View |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.18KTSH | PF03110 - SBP domain (SBP) | arahy.Tifrunner.gnm1.Arahy.03 | - | View |
Arabidopsis thaliana | AT2G33810 | squamosa promoter binding protein-like 3 Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family%2C a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box%2C which encodes the SBP-domain%2C required and sufficient for interaction with DNA. It binds DNA%2C may directly regulate AP1%2C and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. squamosa promoter binding protein-like 3 (SPL3)%3B CONTAINS InterPro DOMAIN/s: Squamosa promoter-binding protein (InterPro:IPR017238)%2C Transcription factor%2C SBP-box (InterPro:IPR004333)%3B BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 12 (TAIR:AT3G60030.1)%3B Has 874 Blast hits to 869 proteins in 50 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 25%3B Fungi - 10%3B Plants - 838%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink). | Chr2 | + | View |
Brassica carinata | BcaB02g10595 | ChrB02 | + | View | |
Brassica carinata | BcaC09g48482 | ChrC09 | - | View | |
Brassica carinata | BcaB06g29551 | ChrB06 | - | View | |
Brassica napus | A01p38590 | A01 | - | View | |
Brassica napus | C04p63380 | C04 | + | View | |
Brassica napus | A04p26040 | A04 | + | View | |
Brassica napus | A05p11760 | A05 | - | View | |
Brassica napus | C05p51970 | C05 | + | View | |
Brassica oleracea | BolC4t27813H | C4 | + | View | |
Brassica rapa | BraA04t18106Z | A04 | + | View | |
Brassica rapa | BraA01t03925Z | A01 | + | View | |
Brassica rapa | BraA05t20120Z | A05 | - | View | |
Beta vulgaris | EL10Ac8g20416 | PF03110 - SBP domain (SBP) | Chr8_EL10_PGA_scaffold4 | + | View |
Capsicum annuum | CAN.G529.23 | PGAv.1.6.scaffold529 | + | View | |
Cannabis sativa | CANSAT64G1429 | NC_044379.1 | + | View | |
Cicer arietinum L. | Ca_18573_v3 | Ca_LG6_v3 | + | View | |
Corylus avellana | Haze_13205 | Similar to SBP1: Squamosa promoter-binding protein 1 (Antirrhinum majus OX%3D4151) | 5 | + | View |
Corylus avellana | Haze_06407 | Similar to SBP1: Squamosa promoter-binding protein 1 (Antirrhinum majus OX%3D4151) | 2 | - | View |
Coffea canephora | Cc05_g11850 | Putative uncharacterized protein | chr5 | - | View |
Coffea canephora | Cc02_g13600 | Squamosa promoter-binding protein 1 | chr2 | + | View |
Coffea canephora | Cc05_g07500 | Putative uncharacterized protein | chr5 | + | View |
Citrus clementina | Ciclev10016841m.g | scaffold_2 | - | View | |
Citrus clementina | Ciclev10017104m.g | scaffold_2 | + | View | |
Carpinus fangiana | Cfa014642 | Cfa06 | + | View | |
Cardamine hirsuta | CARHR127930 | squamosa promoter binding protein-like 3 | Chr4 | + | View |
Carya illinoinensis | CiPaw.09G061900 | PF03110 - SBP domain (SBP) | Chr09 | + | View |
Carya illinoinensis | CiPaw.11G171300 | PF03110 - SBP domain (SBP) | Chr11 | + | View |
Carya illinoinensis | CiPaw.03G179400 | PTHR31251//PTHR31251:SF9 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Chr03 | + | View |
Carya illinoinensis | CiPaw.10G051000 | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Chr10 | + | View |
Citrullus lanatus | ClCG01G023100 | Squamosa promoter-binding protein, putative | CG_Chr01 | + | View |
Citrullus lanatus | ClCG11G017960 | Squamosa promoter-binding protein, putative | CG_Chr11 | - | View |
Citrullus lanatus | ClCG03G008110 | Squamosa promoter-binding protein, putative | CG_Chr03 | - | View |
Cucumis melo | MELO3C032886.2 | squamosa promoter-binding protein 1 | chr08 | - | View |
Cucumis melo | MELO3C002618.2 | Squamosa promoter-binding-like protein | chr12 | - | View |
Corchorus olitorius | COL.COLO4_31440 | Transcription factor%2C SBP-box | AWUE01020854.1 | - | View |
Capsella rubella | Carub.0004s1548 | PF03110 - SBP domain (SBP) | scaffold_4 | + | View |
Cucumis sativus L. | CsaV3_4G033580 | Squamosa promoter-binding protein | chr4 | - | View |
Cucumis sativus L. | CsaV3_1G012440 | Squamosa promoter-binding-like protein | chr1 | + | View |
Cucumis sativus L. | CsaV3_6G050240 | Squamosa promoter-binding-like protein | chr6 | + | View |
Daucus carota | DCAR_021254 | hypothetical protein | DCARv2_Chr6 | - | View |
Daucus carota | DCAR_008025 | hypothetical protein | DCARv2_Chr2 | - | View |
Davidia involucrata | Dinv13392 | GWHABJS00000013 | + | View | |
Davidia involucrata | Dinv40583 | GWHABJS00000274 | + | View | |
Davidia involucrata | Dinv17331 | GWHABJS00000020 | - | View | |
Davidia involucrata | Dinv14930 | GWHABJS00000001 | - | View | |
Davidia involucrata | Dinv20191 | GWHABJS00000013 | + | View | |
Durio zibethinus | Duzib160G0615 | NW_019168015.1 | - | View | |
Durio zibethinus | Duzib235G0885 | NW_019167982.1 | - | View | |
Durio zibethinus | Duzib213G0865 | NW_019167993.1 | + | View | |
Durio zibethinus | Duzib192G0476 | NW_019168037.1 | + | View | |
Durio zibethinus | Duzib052G1134 | NW_019167849.1 | - | View | |
Erigeron canadensis | ECA234G2907 | Conyza_canadensis_scaffold:4 | + | View | |
Eucalyptus grandis | Eucgr.E03260 | Chr05 | - | View | |
Eucalyptus grandis | Eucgr.K01046 | Chr11 | + | View | |
Erythranthe guttata | Migut.M00787 | scaffold_13 | - | View | |
Erythranthe guttata | Migut.M01124 | scaffold_13 | - | View | |
Eutrema salsugineum | Thhalv10017406m.g | PF03110 - SBP domain (SBP) | scaffold_10 | + | View |
Fragaria x ananassa | FAN21G3081 | PF03110 - SBP domain (SBP) | Fvb3-2 | - | View |
Fragaria x ananassa | FAN11G3094 | PTHR31251//PTHR31251:SF9 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Fvb3-4 | + | View |
Fragaria x ananassa | FAN25G3756 | PF03110 - SBP domain (SBP) | Fvb3-1 | + | View |
Fragaria x ananassa | FAN14G3654 | PTHR31251//PTHR31251:SF9 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Fvb6-1 | - | View |
Fragaria x ananassa | FAN16G2365 | PF03110 - SBP domain (SBP) | Fvb3-3 | - | View |
Fragaria x ananassa | FAN21G3098 | PTHR31251//PTHR31251:SF9 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Fvb3-2 | + | View |
Fragaria x ananassa | FAN16G0085 | PTHR31251//PTHR31251:SF9 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Fvb3-3 | - | View |
Fragaria x ananassa | FAN11G2610 | PF03110 - SBP domain (SBP) | Fvb3-4 | + | View |
Fragaria vesca | FvH4_3g08880 | PF03110 - SBP domain (SBP) | Fvb3 | - | View |
Fragaria vesca | FvH4_6g26530 | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Fvb6 | + | View |
Fragaria vesca | FvH4_3g19650 | PTHR31251//PTHR31251:SF9 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Fvb3 | - | View |
Gossypium hirsutum | Gohir.D01G048500 | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | D01 | - | View |
Gossypium hirsutum | Gohir.D10G027600 | PF03110 - SBP domain (SBP) | D10 | + | View |
Gossypium hirsutum | Gohir.A01G061900 | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | A01 | - | View |
Gossypium hirsutum | Gohir.A10G027200 | PF03110 - SBP domain (SBP) | A10 | + | View |
Glycine max | Glyma.13G274900 | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Gm13 | - | View |
Glycine max | Glyma.13G177400 | PF03110 - SBP domain (SBP) | Gm13 | - | View |
Glycine max | Glyma.15G076200 | PF03110 - SBP domain (SBP) | Gm15 | + | View |
Glycine max | Glyma.07G199000 | PF03110 - SBP domain (SBP) | Gm07 | + | View |
Glycine max | Glyma.13G295401 | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Gm13 | - | View |
Glycine max | Glyma.12G226000 | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Gm12 | + | View |
Glycine max | Glyma.13G237400 | PF03110 - SBP domain (SBP) | Gm13 | - | View |
Gossypium raimondii | Gorai.002G068300 | Chr02 | - | View | |
Gossypium raimondii | Gorai.011G029400 | Chr11 | + | View | |
Helianthus annuus | HanXRQChr17g0560071 | Probable squamosa promoter-binding protein 1 | HanXRQChr17 | - | View |
Hydrangea macrophylla | Hma1.2p1_0208F.1_g088310 | Hma1.2p1_0208F.1 | + | View | |
Hydrangea macrophylla | Hma1.2p1_0002F.1_g002110 | Hma1.2p1_0002F.1 | + | View | |
Lupinus albus | Lalb_Chr15g0089721 | PF03110 - SBP domain (SBP) | Lalb_Chr15 | - | View |
Lupinus albus | Lalb_Chr18g0059471 | PF03110 - SBP domain (SBP) | Lalb_Chr18 | - | View |
Lupinus albus | Lalb_Chr20g0121661 | PF03110 - SBP domain (SBP) | Lalb_Chr20 | - | View |
Lotus japonicus | Lj6g0009941 | PF03110 - SBP domain (SBP) | chr6 | - | View |
Lotus japonicus | Lj3g0002686 | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | chr3 | + | View |
Lotus japonicus | Lj3g0002499 | PF03110 - SBP domain (SBP) | chr3 | - | View |
Lotus japonicus | Lj4g0006856 | PF03110 - SBP domain (SBP) | chr4 | + | View |
Lonicera japonica | Lj2C290T6 | GWHAAZE00000002 | + | View | |
Lonicera japonica | Lj1A712T58 | GWHAAZE00000001 | - | View | |
Lonicera japonica | Lj1A1202G62 | GWHAAZE00000001 | - | View | |
Lactuca sativa | Lsat_1_v5_gn_1_128400 | Lsat_1_v8_lg_1 | + | View | |
Lactuca sativa | Lsat_1_v5_gn_4_52201 | Lsat_1_v8_lg_4 | - | View | |
Malus domestica | MD09G1244200 | squamosa promoter binding protein-like 4 | Chr09 | - | View |
Malus domestica | MD05G1312300 | squamosa promoter binding protein-like 3 | Chr05 | - | View |
Malus domestica | MD10G1291800 | squamosa promoter binding protein-like 3 | Chr10 | - | View |
Manihot esculenta | Manes.13G144400 | Chromosome13 | - | View | |
Manihot esculenta | Manes.16G029900 | Chromosome16 | + | View | |
Manihot esculenta | Manes.03G106900 | Chromosome03 | - | View | |
Manihot esculenta | Manes.17G047500 | Chromosome17 | + | View | |
Medicago truncatula | Medtr4g088555 | squamosa promoter-binding-like protein | chr4 | - | View |
Medicago truncatula | Medtr2g014200 | squamosa promoter-binding-like protein | chr2 | + | View |
Olea europaea | Oeu056098.1 | chr6 | + | View | |
Petunia axillaris | Peaxi162Scf00069g01624 | squamosa promoter-binding protein-like 12 | Peaxi162Scf00069 | + | View |
Punica granatum | PGR042G0872 | NC_045130.1 | - | View | |
Punica granatum | PGR042G1074 | NC_045130.1 | + | View | |
Prunus persica | Prupe.4G050400 | PF03110 - SBP domain (SBP) | Pp04 | + | View |
Prunus persica | Prupe.4G177200 | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Pp04 | - | View |
Pisum sativum | Psat7g115040 | SBP domain | chr7LG7 | - | View |
Pisum sativum | Psat1g203760 | SBP domain | chr1LG6 | - | View |
Papaver somniferum | PSO675G4132 | NC_039358.1 | + | View | |
Papaver somniferum | PSO832G1461 | NC_039367.1 | - | View | |
Papaver somniferum | PSO541G0770 | NC_039363.1 | - | View | |
Papaver somniferum | PSO210G5411 | NC_039359.1 | - | View | |
Populus trichocarpa | Potri.011G055900 | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Chr11 | + | View |
Populus trichocarpa | Potri.004G046700 | PF03110 - SBP domain (SBP) | Chr04 | + | View |
Populus trichocarpa | Potri.007G138800 | PF03110 - SBP domain (SBP) | Chr07 | - | View |
Populus trichocarpa | Potri.001G398200 | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Chr01 | - | View |
Populus trichocarpa | Potri.011G116800 | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Chr11 | - | View |
Phaseolus vulgaris | Phvul.006G183900 | PF03110 - SBP domain (SBP) | Chr06 | - | View |
Phaseolus vulgaris | Phvul.005G101900 | PTHR31251:SF9 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4-RELATED | Chr05 | - | View |
Phaseolus vulgaris | Phvul.002G230300 | PF03110 - SBP domain (SBP) | Chr02 | + | View |
Quercus lobata | QL05p041622 | 5 | + | View | |
Quercus lobata | QL08p039703 | 8 | + | View | |
Quercus lobata | QL08p022416 | 8 | + | View | |
Rosa chinensis | RcHm_v2.0_Chr5g0032861 | RcHm_v2.0_Chr5 | - | View | |
Rosa chinensis | RcHm_v2.0_Chr5g0008871 | RcHm_v2.0_Chr5 | + | View | |
Rhododendron simsii | Rhsim06G0201200 | chr06 | + | View | |
Rhododendron simsii | Rhsim13G0179600 | chr13 | + | View | |
Striga asiatica | SGA_v2.0_scaffold73G24242 | scaffold73 | - | View | |
Striga asiatica | SGA_v2.0_scaffold70G23509 | scaffold70 | - | View | |
Striga asiatica | SGA_v2.0_scaffold22G09686 | scaffold22 | - | View | |
Salvia bowleyana | SalBow8G2583 | GWHASIU00000004 | + | View | |
Salix brachista | Sabra11G0038000 | GWHAAZH00000011 | - | View | |
Salix brachista | Sabra04G0029000 | GWHAAZH00000004 | + | View | |
Salix brachista | Sabra16G0261000 | GWHAAZH00000016 | - | View | |
Simmondsia chinensis | Sc17g0006100 | GWHAASQ00000017 | - | View | |
Sechium edule | Sed0001992 | LG14 | + | View | |
Sechium edule | Sed0012089 | LG01 | + | View | |
Sechium edule | Sed0020080 | LG10 | - | View | |
Solanum lycopersicum | Solyc02g077920.4 | Colorless non-ripening | SL4.0ch02 | - | View |
Solanum lycopersicum | Solyc07g053810.3 | Squamosa promoter binding protein 4 | SL4.0ch07 | - | View |
Solanum lycopersicum | Solyc10g009080.4 | Squamosa promoter binding protein 3 | SL4.0ch10 | + | View |
Schrenkiella parvula | Sp4g16200 | PF03110 - SBP domain (SBP) | ch4-6 | + | View |
Solanum pennellii | Sopen07g027780 | member of SPL gene family, encodes DNA binding proteins and putative transcription factors. All have the SBP-box, which encodes the SBP-domain, required for and sufficient for interaction with DNA. | squamosa promoter binding protein-like 1 (SPL1) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box , Ankyrin repeat-containing domain , Ankyrin repeat | BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 12 | Spenn-ch07 | - | View |
Solanum pennellii | Sopen02g022770 | Squamosa promoter-binding protein 1 - Antirrhinum majus (Garden snapdragon), squamosa promoter-binding protein-like 12 (SPL12) | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain , Transcription factor, SBP-box | BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 1 | Spenn-ch02 | - | View |
Solanum tuberosum | PGSC0003DMG400022824 | Squamosa promoter binding | ST4.03ch10 | + | View |
Solanum tuberosum | PGSC0003DMG401029709 | Squamosa promoter binding | ST4.03ch02 | - | View |
Solanum tuberosum | PGSC0003DMG400032817 | Squamosa promoter binding | ST4.03ch07 | + | View |
Selenicereus undatus | Hund21214 | Scaffold_33680 | - | View | |
Trochodendron aralioides | TAR624G0899 | group9 | - | View | |
Trochodendron aralioides | TAR626G0880 | group3 | + | View | |
Trochodendron aralioides | TAR629G3115 | group0 | + | View | |
Trochodendron aralioides | TAR627G0867 | group6 | - | View | |
Theobroma cacao | Thecc.06G183900 | Squamosa promoter binding protein-like 3 | Chromosome_6 | - | View |
Theobroma cacao | Thecc.02G183100 | Squamosa promoter binding protein-like 4 | Chromosome_2 | + | View |
Theobroma cacao | Thecc.07G094900 | Chromosome_7 | + | View | |
Trifolium pratense | TPR.G16326 | Tp57577_TGAC_v2_scaf_271 | - | View | |
Trifolium pratense | TPR.G16525 | Tp57577_TGAC_v2_LG2 | + | View | |
Tripterygium wilfordii | TWI38G0968 | NC_052252.1 | + | View | |
Tripterygium wilfordii | TWI23G0382 | NC_052239.1 | - | View | |
Tripterygium wilfordii | TWI63G0712 | NC_052240.1 | + | View | |
Tripterygium wilfordii | TWI39G1043 | NC_052250.1 | + | View | |
Tripterygium wilfordii | TWI38G1698 | NC_052252.1 | - | View | |
Vaccinium macrocarpon | vmacro11882 | Similar to SPL8: Squamosa promoter-binding-like protein 8 (Arabidopsis thaliana OX%3D3702) | chr11_Vaccinium_macrocarpon_Stevens_v1 | + | View |
Vigna mungo | VMungo1080G0460 | CM024079.1 | + | View | |
Vigna mungo | VMungo0540G1566 | CM024075.1 | + | View | |
Vigna mungo | VMungo0251G0185 | CM024069.1 | + | View | |
Vigna mungo | VMungo1080G1216 | CM024079.1 | + | View | |
Vitis vinifera | GSVIVG01021087001 | chr10 | + | View | |
Vitis vinifera | GSVIVG01014302001 | chr19 | - | View | |
Vitis vinifera | GSVIVG01020578001 | chr12 | - | View |