Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0033067 PREDICTED: LOW QUALITY PROTEIN: spidroin-1 [Vitis vinifera] Chr5 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G11610 LG-3 - View
Acer truncatum Atru.chr2.3685 chr2 - View
Actinidia chinensis Actinidia05010 Lachesis_group19 + View
Actinidia chinensis Actinidia30409 Lachesis_group10 - View
Arabidopsis lyrata AL8G31250 scaffold_8 - View
Avicennia marina MSTRG.15794 ScioBoG_19538_HRSCAF_19626 - View
Amaranthus hybridus Ah.06g181410 Nipped-B-like protein B AmaHy_arrow1_Scaffold_6 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.BMQ6HD K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) arahy.Tifrunner.gnm1.Arahy.11 - View
Arabidopsis thaliana AT5G55670 RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G13190.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaC01g06386 ChrC01 - View
Brassica carinata BcaB08g35930 ChrB08 - View
Brassica carinata BcaC04g20206 ChrC04 + View
Brassica napus C02p15920 C02 + View
Brassica napus C09p46690 C09 - View
Brassica napus A03p13880 A03 + View
Brassica napus A10p12980 A10 - View
Brassica napus C03p16330 C03 + View
Brassica napus A02p09570 A02 + View
Brassica oleracea BolC2t07697H C2 + View
Brassica oleracea BolC9t57519H C9 - View
Brassica oleracea BolC3t14056H C3 + View
Brassica rapa BraA02t06021Z A02 + View
Brassica rapa BraA10t43392Z A10 - View
Brassica rapa BraA03t10691Z A03 + View
Beta vulgaris EL10Ac4g07574 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Chr4_EL10_PGA_scaffold1 + View
Cannabis sativa CANSAT11G2683 NC_044377.1 + View
Corylus avellana Haze_09820 Similar to RBG7: Glycine-rich RNA-binding protein 7 (Arabidopsis thaliana OX%3D3702) 4 - View
Coffea canephora Cc05_g14910 RNA-binding (RRM/RBD/RNP motifs) family protein chr5 - View
Carpinus fangiana Cfa020196 Cfa08 + View
Cardamine hirsuta CARHR268990 RNA-binding protein, putative Chr8 - View
Carya illinoinensis CiPaw.11G203500 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Chr11 - View
Carya illinoinensis CiPaw.12G137900 KOG4849 - mRNA cleavage factor I subunit/CPSF subunit Chr12 - View
Citrullus lanatus ClCG09G021320 RNA-binding protein, putative CG_Chr09 - View
Cucumis melo MELO3C024936.2 Cleavage and polyadenylation specificity factor subunit chr01 + View
Corchorus olitorius COL.COLO4_09825 hypothetical protein AWUE01014274.1 - View
Carica papaya Cpa.g.sc12.150 supercontig_12 + View
Chenopodium quinoa AUR62017098 CG7185: Cleavage and polyadenylation specificity factor subunit CG7185 C_Quinoa_Scaffold_3787 - View
Capsella rubella Carub.0008s1604 scaffold_8 - View
Cucumis sativus L. CsaV3_7G011270 cleavage and polyadenylation specificity factor subunit CG7185 chr7 - View
Davidia involucrata Dinv10329 GWHABJS00000001 - View
Davidia involucrata Dinv40855 GWHABJS00000013 + View
Erigeron canadensis ECA240G0531 Conyza_canadensis_scaffold:5 - View
Eucalyptus grandis Eucgr.F03691 Chr06 + View
Erythranthe guttata Migut.M01656 scaffold_13 + View
Eutrema salsugineum Thhalv10012809m.g K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) scaffold_2 + View
Fragaria x ananassa FAN16G1153 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Fvb3-3 + View
Fragaria x ananassa FAN21G2296 PTHR24012:SF425 - F3F19.21 PROTEIN Fvb3-2 + View
Fragaria x ananassa FAN11G0549 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Fvb3-4 - View
Glycine max Glyma.08G329400 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Gm08 - View
Glycine max Glyma.18G077300 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Gm18 + View
Hydrangea macrophylla Hma1.2p1_1402F.1_g281150 Hma1.2p1_1402F.1 + View
Lupinus albus Lalb_Chr15g0082051 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Lalb_Chr15 - View
Lotus japonicus Lj6g0021071 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) chr6 + View
Lactuca sativa Lsat_1_v5_gn_9_89900 Lsat_1_v8_lg_9 + View
Malus domestica MD03G1183300 RNA-binding (RRM/RBD/RNP motifs) family protein Chr03 + View
Malus domestica MD11G1200300 RNA-binding (RRM/RBD/RNP motifs) family protein Chr11 + View
Manihot esculenta Manes.03G141000 Chromosome03 - View
Medicago truncatula Medtr3g058990 RNA recognition motif, a.k.a. RRM, RBD protein chr3 - View
Olea europaea Oeu005960.1 scaffold1216 + View
Olea europaea Oeu005484.1 chr10 - View
Oryza sativa ssp. japonica Os08g0490300 RNA recognition motif, glycine rich protein domain containing protein. chr08 - View
Petunia axillaris Peaxi162Scf01164g00123 RNA-binding (RRM/RBD/RNP motifs) family protein Peaxi162Scf01164 - View
Punica granatum PGR083G1251 NC_045133.1 - View
Punica granatum PGR031G0705 NC_045127.1 + View
Prunus persica Prupe.4G242800 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Pp04 - View
Phaseolus vulgaris Phvul.006G057000 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) Chr06 - View
Quercus lobata QL08p004208 8 + View
Rosa chinensis RcHm_v2.0_Chr5g0053701 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim06G0229100 chr06 - View
Striga asiatica SGA_v2.0_scaffold171G38876 scaffold171 + View
Striga asiatica SGA_v2.0_scaffold168G38559 scaffold168 - View
Simmondsia chinensis Sc16g0008040 GWHAASQ00000016 - View
Simmondsia chinensis Sc03g0011260 GWHAASQ00000003 - View
Sechium edule Sed0021905 LG07 - View
Sechium edule Sed0019293 LG04 + View
Sapria himalayana SHI26538 scaffold60_3140063 - View
Solanum lycopersicum Solyc10g005980.1 RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *-* Q9FM71_ARATH) SL4.0ch10 + View
Solanum lycopersicum Solyc07g065510.4 RNA recognition motif domain (AHRD V3.3 *-* A0A200QK79_9MAGN) SL4.0ch07 - View
Schrenkiella parvula Sp6g17580 K14398 - cleavage and polyadenylation specificity factor subunit 6/7 (CPSF6_7) ch6-6 - View
Solanum pennellii Sopen10g001940 RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein . Spenn-ch10 + View
Solanum pennellii Sopen07g033720 RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein . Spenn-ch07 - View
Solanum tuberosum PGSC0003DMG400014376 RNA-binding protein ST4.03ch10 + View
Solanum tuberosum PGSC0003DMG400022171 RNA-binding protein ST4.03ch07 - View
Selenicereus undatus Hund01896 Scaffold_33678 + View
Trochodendron aralioides TAR626G0268 group3 + View
Trochodendron aralioides TAR629G1470 group0 + View
Trochodendron aralioides TAR629G2256 group0 + View
Theobroma cacao Thecc.07G014400 RNA-binding family protein Chromosome_7 + View
Tarenaya hassleriana THA.LOC104813448 cleavage and polyadenylation specificity factor subunit 6-like NW_010965373.1 - View
Tarenaya hassleriana THA.LOC104818108 spidroin-1-like NW_010966021.1 - View
Trifolium pratense TPR.G24142 Tp57577_TGAC_v2_LG4 - View
Tripterygium wilfordii TWI39G1150 NC_052250.1 + View
Tripterygium wilfordii TWI38G1726 NC_052252.1 - View
Vigna mungo VMungo0540G2061 CM024075.1 + View
Vitis vinifera GSVIVG01014675001 chr19 - View